SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene347

Length: 2382 nt

UniGene Fasta

>sp_v3.0_unigene347
CATACAGATTGTTGATTTCGCTTTGGTTACTAGTGTTACAGCGAGGGGAAGGTCAAAGGATTTTGGGCAAAGATGGCCAGAATTAAGGTTCACGAGCTACGGCTGAAGAGCAAAGCAGATCTCCTGAATCAACTCAAGGAGCTCAAGGCGGAGCTTGCTTTGCTCAGGGTTGCCAAAGTCACAGGAGGAGCCCCTAACAAGCTTTCTAAAATCAAGGTGGTGAGATTATCAATTGCACAAGTGTTAACAGTGATATCTCAGAATCAGAAAACAGCGTTGAGGGAAGCCTACAAAAAGAAGAAGTATTTGCCTCTTGACTTGCGTCCTAAGAAGACACGCGCCATCAGACGACGCCTCACCAAGCACCAGGTACTACTATCACGGAAAAAGAATCCCTCTGTTAATATTAAGAAGCCAGCCTTGACTACAAATGCCATTCCTTTGCTGCTGAATGGTTCCACTGAGATTCAACCACTACTCCAGATAATCGATATTGGTTCTGTTACATCATTAAAAACAACATCCTCACACTTCTGCATTACTCTATCTGATGGAGCACATCAACACAAGACTTTGCTACCATCATCATATAGCCCACAAGTTGCTTCTAAAGACATTCAAATTGGCTCAATAATTCTGCTTAAAAAAGCAGCTTGCACGGTGCTTCAAAACTCCTCGTCCATCCAAGTGGTTGAGCTTGAAGTTGTAATGCGTACAGCAGCATTGACCAAGGACTCATCAACACTAATACATGCAAAGGCAGGTACATCCCAGTATAGCTCTTCATTTGTAGAAGATACCTTGCCCTTTGTAGTTACTCCACTAATTACGGTGACAACTACAATTATTCCATTCAAGGCACTCAATCCTTACCGAAAGTATTGGTCAATCCAAGGTAGAGCATCTGCAAAAACAGCATTGAAGACTTACAACAATGTGCGAGGCTCAGGAAAAGTTTTTGGATTTGACCTTATCAATCGTGATAAGGAAGAGATCCACCTTTCTGCATTTGCCGGAGTGACCTTGAATCTCACTAAAGTCTAGTTCAAGTTGGCCAGCTATACATTGTTTCAAATGGCACAGTCAAAGAAGCAAACCCAAACTACAACCACCTCAAGAACAAGTGGGAAATTTGCTTGTTTGCTGCTTCCGTTGTCAATAAATGCCCCATAGATGATCCAACGTTTCCTTACCAGAGCTTTCACTTCAAAACTATTGCTGAAATAAAAAATGCAAGTCCAAATACGAATGTGGATGTGATTGGTGTTGTTACCTCCATCTCACCTGCATCAACAATTCGACAAAAAGACGGAAGTGAAACATTAAGGAAAACACTCATATTAAAAGACAAGTCTGGTTTTAGCATTGGTGTAACATTATGGGGAGACCATTGTGACTATATAGAACAAAACTTTGCTGAATTCTACTCTTTTGACAACTCACCAATCCTTGCAATCAAAGGAGGTCGTGTATCTGAATTTAATGGCACCACAATAGGAGCGACATCAACGAGCACTCTCATCATAAATCCACAAGTTGAAGAAACTCATCAACTACATGCATGGTTCCGTGAAACAGGTTATAGCTCTTCTTCTCCATTTTTGAGTAGAAACTATGGTGTTGCTTCAAAACATGCCCTACTACAAAAGACGCTTCATGAAATTGCTTACATGCAAACCTCCAAGAAAGGAAAATGGGTTTCAGTTCGTGCAACGATAACTGCTCTTCACATGGACAACTTCTACTTTCTAGCATGTCCATTAGATTTTAATGGAAAAAAATGTATGAAAAAGGTTGTGGAGCGTTCCAACAATCTTTGGCATTGTACAAAATGTAACGGCGACTTCCTAGAACGTGACTACTGTTACAAACTTAAAATTGAGCTACATGACCACACCGGGTACCTACAGAACGTCACAGCTTTCAATGACGCAGGAAACGAGCTCATGGGCATCACGGCAAAAGACCTCTTCCTTCTTTCTATCGAACCAACTGATCTGCAAAAAATTTGTGGCCGTATTATAGGACGCCACTTCCTGCTTACACTTTCCATTAAAACAGATTACTTCAATGGTGTTGAGCGCTTGCAACCAATACTGATAAATTCAGAAGAAATTCAATTTGCCTCTGCATGCGAAGAAGCCCTTAATGGCATTCAAGCAATGTCCATTTCAAAACAGCATGTTGTTCGCCACTTTTGAAATCTTTTTATGATCTCTTCAAACACTACTACTTGTACATAAACTGGCATTTCTGAATTACACCCATGCTATTGTAATGCACACTTTTGCTGCAAATACTCTCTTCCAGTTATTCCAAAATATGTATGTCTACCCTTTGCATTTTACATAATATAGATATCAACATTTGTAAAGAGTTACC

Ace file of the UniGene sp_v3.0_unigene347

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RPA 70kDa subunit [Pisum sativum]	-	-	0.0	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	60S ribosomal protein L35	-	-	4.857e-18	-

Source	Gene names
Sma3	At2g39390; At3g09500; At3g55170; At5g02610; B1206D04.28; CHLREDRAFT_147004; F11F8_7; F12L6.5; GSVIVT00029522001; MICPUCDRAFT_49485; MICPUN_107597; OJ1003_F04.3; OJ1126_B06.24; OSJNBb0006N15.8; OSJNOa230J22.1; OSTLU_31613; Os02g0503400; Os04g0376000; Os06g

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Ribosomal protein L29	IPR001854	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	Replication factor-a protein 1 Rpa1	IPR004591	-	-
Sma3	Replication factor-A protein 1, N-terminal	IPR007199	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Replication factor A, C-terminal	IPR013955	-	-
Sma3		IPR015609	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTY0

Fln msg: your sequence is longer than subject: 324 - 123

Fln protein: MARIKVHELRLKSKADLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQNQKTALREAYKKKKYLPLDLRPKKTRAIRRRLTKHQVLLSRKKNPSVNIKKPALTTNAIPLLLNGSTEIQPLLQIIDIGSVTSLKTTSSHFCITLSDGAHQHKTLLPSSYSPQVASKDIQIGSIILLKKAACTVLQNSSSIQVVELEVVMRTAALTKDSSTLIHAKAGTSQYSSSFVEDTLPFVVTPLITVTTTIIPFKALNPYRKYWSIQGRASAKTALKTYNNVRGSGKVFGFDLINRDKEEIHLSAFAGVTLNLTKV*

Protein Length: 325

Fln nts: CATACAGATTGTTGATTTCGCTTTGGTTACTAGTGTTACAGCGAGGGGAAGGTCAAAGGATTTTGGGCAAAG_-_ATGGCCAGAATTAAGGTTCACGAGCTACGGCTGAAGAGCAAAGCAGATCTCCTGAATCAACTCAAGGAGCTCAAGGCGGAGCTTGCTTTGCTCAGGGTTGCCAAAGTCACAGGAGGAGCCCCTAACAAGCTTTCTAAAATCAAGGTGGTGAGATTATCAATTGCACAAGTGTTAACAGTGATATCTCAGAATCAGAAAACAGCGTTGAGGGAAGCCTACAAAAAGAAGAAGTATTTGCCTCTTGACTTGCGTCCTAAGAAGACACGCGCCATCAGACGACGCCTCACCAAGCACCAGGTACTACTATCACGGAAAAAGAATCCCTCTGTTAATATTAAGAAGCCAGCCTTGACTACAAATGCCATTCCTTTGCTGCTGAATGGTTCCACTGAGATTCAACCACTACTCCAGATAATCGATATTGGTTCTGTTACATCATTAAAAACAACATCCTCACACTTCTGCATTACTCTATCTGATGGAGCACATCAACACAAGACTTTGCTACCATCATCATATAGCCCACAAGTTGCTTCTAAAGACATTCAAATTGGCTCAATAATTCTGCTTAAAAAAGCAGCTTGCACGGTGCTTCAAAACTCCTCGTCCATCCAAGTGGTTGAGCTTGAAGTTGTAATGCGTACAGCAGCATTGACCAAGGACTCATCAACACTAATACATGCAAAGGCAGGTACATCCCAGTATAGCTCTTCATTTGTAGAAGATACCTTGCCCTTTGTAGTTACTCCACTAATTACGGTGACAACTACAATTATTCCATTCAAGGCACTCAATCCTTACCGAAAGTATTGGTCAATCCAAGGTAGAGCATCTGCAAAAACAGCATTGAAGACTTACAACAATGTGCGAGGCTCAGGAAAAGTTTTTGGATTTGACCTTATCAATCGTGATAAGGAAGAGATCCACCTTTCTGCATTTGCCGGAGTGACCTTGAATCTCACTAAAGTCTAG___TTCAAGTTGGCCAGCTATACATTGTTTCAAATGGCACAGTCAAAGAAGCAAACCCAAACTACAACCACCTCAAGAACAAGTGGGAAATTTGCTTGTTTGCTGCTTCCGTTGTCAATAAATGCCCCATAGATGATCCAACGTTTCCTTACCAGAGCTTTCACTTCAAAACTATTGCTGAAATAAAAAATGCAAGTCCAAATACGAATGTGGATGTGATTGGTGTTGTTACCTCCATCTCACCTGCATCAACAATTCGACAAAAAGACGGAAGTGAAACATTAAGGAAAACACTCATATTAAAAGACAAGTCTGGTTTTAGCATTGGTGTAACATTATGGGGAGACCATTGTGACTATATAGAACAAAACTTTGCTGAATTCTACTCTTTTGACAACTCACCAATCCTTGCAATCAAAGGAGGTCGTGTATCTGAATTTAATGGCACCACAATAGGAGCGACATCAACGAGCACTCTCATCATAAATCCACAAGTTGAAGAAACTCATCAACTACATGCATGGTTCCGTGAAACAGGTTATAGCTCTTCTTCTCCATTTTTGAGTAGAAACTATGGTGTTGCTTCAAAACATGCCCTACTACAAAAGACGCTTCATGAAATTGCTTACATGCAAACCTCCAAGAAAGGAAAATGGGTTTCAGTTCGTGCAACGATAACTGCTCTTCACATGGACAACTTCTACTTTCTAGCATGTCCATTAGATTTTAATGGAAAAAAATGTATGAAAAAGGTTGTGGAGCGTTCCAACAATCTTTGGCATTGTACAAAATGTAACGGCGACTTCCTAGAACGTGACTACTGTTACAAACTTAAAATTGAGCTACATGACCACACCGGGTACCTACAGAACGTCACAGCTTTCAATGACGCAGGAAACGAGCTCATGGGCATCACGGCAAAAGACCTCTTCCTTCTTTCTATCGAACCAACTGATCTGCAAAAAATTTGTGGCCGTATTATAGGACGCCACTTCCTGCTTACACTTTCCATTAAAACAGATTACTTCAATGGTGTTGAGCGCTTGCAACCAATACTGATAAATTCAGAAGAAATTCAATTTGCCTCTGCATGCGAAGAAGCCCTTAATGGCATTCAAGCAATGTCCATTTCAAAACAGCATGTTGTTCGCCACTTTTGAAATCTTTTTATGATCTCTTCAAACACTACTACTTGTACATAAACTGGCATTTCTGAATTACACCCATGCTATTGTAATGCACACTTTTGCTGCAAATACTCTCTTCCAGTTATTCCAAAATATGTATGTCTACCCTTTGCATTTTACATAATATAGATATCAACATTTGTAAAGAGTTACC

Fln Alignment:

Contig347___MARIKVHELRLKSKADXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQNQKTALREAYKKKKYLPLDLRPKKTRAIRRRLTKHQVLLSRKK
A9NTY0_____________MARIKVHELRIKSKAELLNQLTELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQNQKTALREAYKKKKYLPLDLRPKKTRAIRRRLTKHQASMKTER

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
1934		90		10	0.90298
1937	90		10		0.90298
1938			90	10	0.90298
1941	90	10			0.90298
1942	90	10			0.90298
1943		90		10	0.90298
1944			90	10	0.90298
1945	90		10		0.90298
1952		10	90		0.90298
1953	10		90		0.90298
1985			10	90	0.90298
2021	40	10		50	1.0
2022	90		10		0.90298
2024	10			90	0.90298
2025	90	10			0.90298
2027	90			10	0.90298
2030	90	10			0.90298
2031		90		10	0.90298
2035	90			10	0.90298
2040		90		10	0.90298
2047		88		11	0.923564
2086			90	10	0.90298
2183	11		88		0.923564
2218	60		40		1.0
2272			20	80	0.995493
2278		20		80	0.995493
2280		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain