SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene346

Length: 4270 nt

UniGene Fasta

>sp_v3.0_unigene346
GGGGGACTTTTCTGCTTCGCGGCAACCCCCAGCTGGCCTAAGGGACCAAGCTGGAGCGTTTAAATTTGAAGATACAGCCACAATTCGTTCAAATTGATGCCAGTTCTGGAACGGCGACCGCCGGAATAGTGCGAATGGAGCTTTCAGCCCAGTTTGCACCTTAGGTTATTTTTCCGGAGATTTCTACCGCTGTTCGTAATCTGTTTGCTATTATCCTATTCTTGTTTCGAGGTCGATTTTGAAGTCGGCAATTTCAGGAAGATGATTTAAAAGTGGAACGAAAGTTTGAATTGAAGCCGAGTGGAGAGAAACGGAATGGCTACGGAGAGTCCGCTGAGGTTGATGGGCAGTGGGGGAGAATCACGGAACTGGTCTACGAGCGGGGGAAGCCTAAGTTATGCATCATCCCATGACGGAGCAGAGCACGACTTATCTTTATTGCTGAGAGAAGGGAGGTTTCGTAATAGTAGGGAGTTGGTTCCCAATCGAAGTGGAAGTGCACCCCCGACTTTTGAGGGATCGCTGGCAGCCTTTGGTGGCATCTTCTCTCAGGAAAATTCAAGTGGGGATTCAAGTTGGGAGGTGCCAGATGATGCCCTTGAAAGCTTTGACCCTGAGGAGCAAATTCGACCTGATCCAGAATATTTGGCTTACCATTATTCTCATAACTTAAACCCAAGGCTTCCGCGGGAGAGTCGCCGTTTAGCACAGCATCTAGGTGGTCTGAATGACAAGCGGAATTTGAGATCCTTAGATGACAGTAACAGTAGGTCGTTGTTCTCTCGACCTGTTCTTCCAACACATAAAGAAGAGCCTGAGGAAGAAAGGTCTCCTGTTGCTCATCTCATTCGCCAGGCCTCCAGTGATTGGGCAGAGAAGGGTTCAGATTATTTTGCAGGGCTCTCTGCAACATCGTTGGGAGGCCGTCCCAAAAGTTTGGTAGATCTGATTCAGGAGGACTTTCCGCGTACACCATCACCTGTATATAATCTTTCTCGTTCCCCAAGTCGTGCTGCAAATGAGGATGGAGTTGATGCCAATTCATCTTTAGATGTTCAGCTTATGCATTTGAGAGAATCTTCCATGTCTTCTGTCAAGGGATCTGAATTAAACACTACAACTCCAGGTTCTCGTTCGGCAACACCTACTCCTAATGGAATCCACATACTTGGAGCCAGTTCAACGAGTGCTCCTCTACATGTAGTCACATCCTCAGATATACCGGTGGAAAGTATACAGTCCAACAGTACGGAAGAAGCTCTGATGGATCAAATCACAGGTTTGGCAGGGGGTTCAAGCATTAGCAACTCCGAGCTAAACAATTCCATGTTGAATTCTGCAAGTACATCAGATGCATCAAAACTTGCAGATGCATTACAAGGTTTCAGTATTGCTGATATGCAGAACTTTGAGGATCACGCTCAGCAAAAAGAACAGCATGTGCATCAGGAGGGAGATCAGACTCATTGTTTTCAATTGCCACAACAACAACATCAACGCCAGCAGCGGGCACATGTTCCCGGTGGTCAAGGCCAAGTTCAGCCACAAGTTCCAATTCAAGCACTACATCAGCAACATCATACCTCTATCAATCAGACTTTTCGCAATCAGGTTAAATATAATGCTCCAAACCTGATGCAATCCCCAGCTGCTGGGTTTCAACCAACACTTCAGCCAGGTGCAGCAGGTGCACCACACTTGTATGCAACTGCAGCTGCTTATATGGCATCTGGAAATCCATATTATCAAAATATGCAGGCTGCTGCTTTATATGCTTCCCAGTATGCAATAAGTGGATATCCTATGAATGCTTCTCTTTTATCTCCAATGATGGCGGGATACCCCACTCATGGTGCAATGCCAATGGCTTTTGATAATGCTGTGGCTGCAAGCATGAATGCACGAGCAGCTGCTACAGCAACACATGGTGGAAGTATGGGGGTTGGTGTAGATATGCAGCAGCTTTATAAATTCAATGGGCAACTTGGAACATTACAACCACCCCTGGCTGATCCAATCTACCTACCTTATTTGCAGCGGTCAGCTGAGGACGTATATAATAGTGCAATGTTTAGTGATCCTTTAGCAGGTAGAGGATTTGTTGGTGGAAGTCAGATGGATACCCTTGAGCTACAGAGGGCTTCAATGATGGGTTATACAGCTGAACAGAAGTCTCAGTTAATGAGAAGTGGGACAATGGGTGTACCAATTGCTGGCAAAAGTGGTGCTGTAAGTCCAGCATATTATGGGAGTCCTTCTAGTATGGCCCTTGTAATGCAATATCCAAATTCACCATTGGCGAGTCCAGTAATACCAGGGTCTCCATTAATGGCAGCAAGTCTTACGGGAAGACCAAATGAGCGAAACTTCTGCCTTCCATTAGGGTCGAACAGGATGACATCCATGGGTGCTTATTCTGGCTGGCAGTCACAGAGGGGAAACGAAAAGCTGGATGATATGAGATGCTCTTCTGTCCTCGAGGAGCTGAAGAACAGTAAAACTCGCAGATTTGAATTATCTGATATTGTTGGACATGTGGCTGAGTTGAGTGCTGATCAACATGGAAGCCGGTTCATACAACAGAAGTTGGAAACAACTAGCCCTGAAGAGAAAGCATTGGTCTTCCAAGAAGTGTTGCCCCAAGCCTCAACACTGATGACGGATGTGTTTGGTAACTATGTTATACAGAAGTTTTTTGAGCATGGTGTTGATCAACAGAGAAAGGAGCTTGCAAATCAACTTGTTGGTCATGTCTTGAATTTAAGTCTTCAGATGTATGGTTGTCGTGTTGTACAGAAGGCACTCGAAGTTGTTGATGTAGACCAGCAGATGCAGCTGGTTTCAGAACTTGATGGACATGTCTTGCGATGTGTCCGAGACCAGAATGGAAACCATGTCATTCAAAAATGTATTGAGTGTGTACCGACAAACCAAATAGAATTTATAATATCTGCCTTTTATGGTCAAGTTGTTAACCTCTCAACACACCCCTATGGTTGCCGTGTCATACAGAGGGTTTTGGAGCATTGTACAGAAGAGCAGAAAAATAATGGCATAATGGCAGAAATTCTACAATCAGCTTACAACCTTGCTCAAGATCAGTATGGAAACTATGTGGCACAGCATGTGCTAGAGCATGGGAAACCCCATGAAAGAAGTGAAATCATCAGCAAACTGGCAGGGAAAATTGTACAAATGAGTCAACATAAATTTGCATCCAATGTTGTTGAAAAATGTTTGGAGCATGGCAACCCAACTGAGCGTGAAATTTTGATTGATGAAATGCTTGGTGATACAGAGGAAAATGAAAATTTACAGGCAATGATGAAAGATCAATATGCTAATTATGTAGTTCAGAAGGTTCTTGAAACTTGTAATGATCAACAAAGGGAGAAGCTACTTACTCGTATAAGAGTTCACTTACATGCACTGAAAAAGTACACCTATGGAAAACATATAGTTGCTCGAGTTGAAAAACTTCTTGCTCTTGGAGAAAAACGCAATTTGTAAATATGATGCTGTCATTCGAAATTTAAGATGTGGGTGAGTTGCAGATCTGCAAACTCCGTGATGTCACTTCTAAAAGCAGCCGAAGAAATGTGTATTATTTTTCTAATTTATACCTGTGGAATATGGCTGTTGAACCTTATAAATGGCCGATTCCGATTTGAGCATTTATGGGGATCTTTGGCAGGGTTATGTATTGCTTGTAAGTTTGTAAAAACACTTGTTTGTTTGTAGGTGACATTTCCTGTAAAACTAATGCGTGTTAAAAAATGTTCAAGGCGTGTCGTTAGTATTCTTTAGCTTTACCACTTTTGGTGGAAATAATGTAGTTTATTCCAAGGAAGAGACCTCTTGGATTTCCAAGAGGATGTGATTTCAGATTCCTTTGTAAAAATTGAGGTTCACCAACTGTCAACTGTACAGACTCAGGAATATGTTTAAACGCACGTTTCTAATAATTTGTTAGGATGTCTCTTTTCCGATATTGACATCTTGGTATTCCCATATCTCAGGGAAAAGATTTAAGTAGGGTCCATGGTAAATGGATTTATCATTGAATAGTGTGTATATCTCATGGAACACAGCTTTGTTCTTTCTAACCAGCGTATATATTAGTTTCACTGCTATCATATAGCTTGTTTATGTAATATTGTTTATTGCGTATGGTATCAAACTGTATTGTATTTTAAATATATTGAAGCTTTCTCATATGTATATTTGAATATTTCAAAATTGCAATATATGCAGAAATTTGTTCCTTACC

Ace file of the UniGene sp_v3.0_unigene346

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SMX6_PHYPA	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Pumilio, putative	-	-	1.113e-07	-

Source	Gene names
Sma3	AT4G25880; AT4g25880; At3g10360/F14P13_4; At4g25880; Bpm; CHLREDRAFT_123505; GSVIVT00003502001; GSVIVT00018156001; GSVIVT00018446001; GSVIVT00024280001; GSVIVT00029610001; GSVIVT00029611001; H0512B01.6; LOC_Os12g38590; MICPUCDRAFT_17677; MICPUN_105887; OS

Source	GOs	Term	Type	e value	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Nucleic acid binding NABP	IPR012940	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD88

Fln msg: your sequence is longer than subject: 1065 - 82

Fln protein: MATESPLRLMGSGGESRNWSTSGGSLSYASSHDGAEHDLSLLLREGRFRNSRELVPNRSGSAPPTFEGSLAAFGGIFSQENSSGDSSWEVPDDALESFDPEEQIRPDPEYLAYHYSHNLNPRLPRESRRLAQHLGGLNDKRNLRSLDDSNSRSLFSRPVLPTHKEEPEEERSPVAHLIRQASSDWAEKGSDYFAGLSATSLGGRPKSLVDLIQEDFPRTPSPVYNLSRSPSRAANEDGVDANSSLDVQLMHLRESSMSSVKGSELNTTTPGSRSATPTPNGIHILGASSTSAPLHVVTSSDIPVESIQSNSTEEALMDQITGLAGGSSISNSELNNSMLNSASTSDASKLADALQGFSIADMQNFEDHAQQKEQHVHQEGDQTHCFQLPQQQHQRQQRAHVPGGQGQVQPQVPIQALHQQHHTSINQTFRNQVKYNAPNLMQSPAAGFQPTLQPGAAGAPHLYATAAAYMASGNPYYQNMQAAALYASQYAISGYPMNASLLSPMMAGYPTHGAMPMAFDNAVAASMNARAAATATHGGSMGVGVDMQQLYKFNGQLGTLQPPLADPIYLPYLQRSAEDVYNSAMFSDPLAGRGFVGGSQMDTLELQRASMMGYTAEQKSQLMRSGTMGVPIAGKSGAVSPAYYGSPSSMALVMQYPNSPLASPVIPGSPLMAASLTGRPNERNFCLPLGSNRMTSMGAYSGWQSQRGNEKLDDMRCSSVLEELKNSKTRRFELSDIVGHVAELSADQHGSRFIQQKLETTSPEEKALVFQEVLPQASTLMTDVFGNYVIQKFFEHGVDQQRKELANQLVGHVLNLSLQMYGCRVVQKALEVVDVDQQMQLVSELDGHVLRCVRDQNGNHVIQKCIECVPTNQIEFIISAFYGQVVNLSTHPYGCRVIQRVLEHCTEEQKNNGIMAEILQSAYNLAQDQYGNYVAQHVLEHGKPHERSEIISKLAGKIVQMSQHKFASNVVEKCLEHGNPTEREILIDEMLGDTEENENLQAMMKDQYANYVVQKVLETCNDQQREKLLTRIRVHLHALKKYTYGKHIVARVEKLLALGEKRNL*

Protein Length: 1066

Fln nts: GGGGGACTTTTCTGCTTCGCGGCAACCCCCAGCTGGCCTAAGGGACCAAGCTGGAGCGTTTAAATTTGAAGATACAGCCACAATTCGTTCAAATTGATGCCAGTTCTGGAACGGCGACCGCCGGAATAGTGCGAATGGAGCTTTCAGCCCAGTTTGCACCTTAGGTTATTTTTCCGGAGATTTCTACCGCTGTTCGTAATCTGTTTGCTATTATCCTATTCTTGTTTCGAGGTCGATTTTGAAGTCGGCAATTTCAGGAAGATGATTTAAAAGTGGAACGAAAGTTTGAATTGAAGCCGAGTGGAGAGAAACGGA_-_ATGGCTACGGAGAGTCCGCTGAGGTTGATGGGCAGTGGGGGAGAATCACGGAACTGGTCTACGAGCGGGGGAAGCCTAAGTTATGCATCATCCCATGACGGAGCAGAGCACGACTTATCTTTATTGCTGAGAGAAGGGAGGTTTCGTAATAGTAGGGAGTTGGTTCCCAATCGAAGTGGAAGTGCACCCCCGACTTTTGAGGGATCGCTGGCAGCCTTTGGTGGCATCTTCTCTCAGGAAAATTCAAGTGGGGATTCAAGTTGGGAGGTGCCAGATGATGCCCTTGAAAGCTTTGACCCTGAGGAGCAAATTCGACCTGATCCAGAATATTTGGCTTACCATTATTCTCATAACTTAAACCCAAGGCTTCCGCGGGAGAGTCGCCGTTTAGCACAGCATCTAGGTGGTCTGAATGACAAGCGGAATTTGAGATCCTTAGATGACAGTAACAGTAGGTCGTTGTTCTCTCGACCTGTTCTTCCAACACATAAAGAAGAGCCTGAGGAAGAAAGGTCTCCTGTTGCTCATCTCATTCGCCAGGCCTCCAGTGATTGGGCAGAGAAGGGTTCAGATTATTTTGCAGGGCTCTCTGCAACATCGTTGGGAGGCCGTCCCAAAAGTTTGGTAGATCTGATTCAGGAGGACTTTCCGCGTACACCATCACCTGTATATAATCTTTCTCGTTCCCCAAGTCGTGCTGCAAATGAGGATGGAGTTGATGCCAATTCATCTTTAGATGTTCAGCTTATGCATTTGAGAGAATCTTCCATGTCTTCTGTCAAGGGATCTGAATTAAACACTACAACTCCAGGTTCTCGTTCGGCAACACCTACTCCTAATGGAATCCACATACTTGGAGCCAGTTCAACGAGTGCTCCTCTACATGTAGTCACATCCTCAGATATACCGGTGGAAAGTATACAGTCCAACAGTACGGAAGAAGCTCTGATGGATCAAATCACAGGTTTGGCAGGGGGTTCAAGCATTAGCAACTCCGAGCTAAACAATTCCATGTTGAATTCTGCAAGTACATCAGATGCATCAAAACTTGCAGATGCATTACAAGGTTTCAGTATTGCTGATATGCAGAACTTTGAGGATCACGCTCAGCAAAAAGAACAGCATGTGCATCAGGAGGGAGATCAGACTCATTGTTTTCAATTGCCACAACAACAACATCAACGCCAGCAGCGGGCACATGTTCCCGGTGGTCAAGGCCAAGTTCAGCCACAAGTTCCAATTCAAGCACTACATCAGCAACATCATACCTCTATCAATCAGACTTTTCGCAATCAGGTTAAATATAATGCTCCAAACCTGATGCAATCCCCAGCTGCTGGGTTTCAACCAACACTTCAGCCAGGTGCAGCAGGTGCACCACACTTGTATGCAACTGCAGCTGCTTATATGGCATCTGGAAATCCATATTATCAAAATATGCAGGCTGCTGCTTTATATGCTTCCCAGTATGCAATAAGTGGATATCCTATGAATGCTTCTCTTTTATCTCCAATGATGGCGGGATACCCCACTCATGGTGCAATGCCAATGGCTTTTGATAATGCTGTGGCTGCAAGCATGAATGCACGAGCAGCTGCTACAGCAACACATGGTGGAAGTATGGGGGTTGGTGTAGATATGCAGCAGCTTTATAAATTCAATGGGCAACTTGGAACATTACAACCACCCCTGGCTGATCCAATCTACCTACCTTATTTGCAGCGGTCAGCTGAGGACGTATATAATAGTGCAATGTTTAGTGATCCTTTAGCAGGTAGAGGATTTGTTGGTGGAAGTCAGATGGATACCCTTGAGCTACAGAGGGCTTCAATGATGGGTTATACAGCTGAACAGAAGTCTCAGTTAATGAGAAGTGGGACAATGGGTGTACCAATTGCTGGCAAAAGTGGTGCTGTAAGTCCAGCATATTATGGGAGTCCTTCTAGTATGGCCCTTGTAATGCAATATCCAAATTCACCATTGGCGAGTCCAGTAATACCAGGGTCTCCATTAATGGCAGCAAGTCTTACGGGAAGACCAAATGAGCGAAACTTCTGCCTTCCATTAGGGTCGAACAGGATGACATCCATGGGTGCTTATTCTGGCTGGCAGTCACAGAGGGGAAACGAAAAGCTGGATGATATGAGATGCTCTTCTGTCCTCGAGGAGCTGAAGAACAGTAAAACTCGCAGATTTGAATTATCTGATATTGTTGGACATGTGGCTGAGTTGAGTGCTGATCAACATGGAAGCCGGTTCATACAACAGAAGTTGGAAACAACTAGCCCTGAAGAGAAAGCATTGGTCTTCCAAGAAGTGTTGCCCCAAGCCTCAACACTGATGACGGATGTGTTTGGTAACTATGTTATACAGAAGTTTTTTGAGCATGGTGTTGATCAACAGAGAAAGGAGCTTGCAAATCAACTTGTTGGTCATGTCTTGAATTTAAGTCTTCAGATGTATGGTTGTCGTGTTGTACAGAAGGCACTCGAAGTTGTTGATGTAGACCAGCAGATGCAGCTGGTTTCAGAACTTGATGGACATGTCTTGCGATGTGTCCGAGACCAGAATGGAAACCATGTCATTCAAAAATGTATTGAGTGTGTACCGACAAACCAAATAGAATTTATAATATCTGCCTTTTATGGTCAAGTTGTTAACCTCTCAACACACCCCTATGGTTGCCGTGTCATACAGAGGGTTTTGGAGCATTGTACAGAAGAGCAGAAAAATAATGGCATAATGGCAGAAATTCTACAATCAGCTTACAACCTTGCTCAAGATCAGTATGGAAACTATGTGGCACAGCATGTGCTAGAGCATGGGAAACCCCATGAAAGAAGTGAAATCATCAGCAAACTGGCAGGGAAAATTGTACAAATGAGTCAACATAAATTTGCATCCAATGTTGTTGAAAAATGTTTGGAGCATGGCAACCCAACTGAGCGTGAAATTTTGATTGATGAAATGCTTGGTGATACAGAGGAAAATGAAAATTTACAGGCAATGATGAAAGATCAATATGCTAATTATGTAGTTCAGAAGGTTCTTGAAACTTGTAATGATCAACAAAGGGAGAAGCTACTTACTCGTATAAGAGTTCACTTACATGCACTGAAAAAGTACACCTATGGAAAACATATAGTTGCTCGAGTTGAAAAACTTCTTGCTCTTGGAGAAAAACGCAATTTGTAA___ATATGATGCTGTCATTCGAAATTTAAGATGTGGGTGAGTTGCAGATCTGCAAACTCCGTGATGTCACTTCTAAAAGCAGCCGAAGAAATGTGTATTATTTTTCTAATTTATACCTGTGGAATATGGCTGTTGAACCTTATAAATGGCCGATTCCGATTTGAGCATTTATGGGGATCTTTGGCAGGGTTATGTATTGCTTGTAAGTTTGTAAAAACACTTGTTTGTTTGTAGGTGACATTTCCTGTAAAACTAATGCGTGTTAAAAAATGTTCAAGGCGTGTCGTTAGTATTCTTTAGCTTTACCACTTTTGGTGGAAATAATGTAGTTTATTCCAAGGAAGAGACCTCTTGGATTTCCAAGAGGATGTGATTTCAGATTCCTTTGTAAAAATTGAGGTTCACCAACTGTCAACTGTACAGACTCAGGAATATGTTTAAACGCACGTTTCTAATAATTTGTTAGGATGTCTCTTTTCCGATATTGACATCTTGGTATTCCCATATCTCAGGGAAAAGATTTAAGTAGGGTCCATGGTAAATGGATTTATCATTGAATAGTGTGTATATCTCATGGAACACAGCTTTGTTCTTTCTAACCAGCGTATATATTAGTTTCACTGCTATCATATAGCTTGTTTATGTAATATTGTTTATTGCGTATGGTATCAAACTGTATTGTATTTTAAATATATTGAAGCTTTCTCATATGTATATTTGAATATTTCAAAATTGCAATATATGCAGAAATTTGTTCCTTACC

Fln Alignment:

Contig346___MLGDTEENENLQAMMKDQYANYVVQKVLETCNDQQREKLLTRIRVHLHALKKYTYGKHIVARVEKLLALGEKR
D5AD88_____________MLGLTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERR

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
180	66		33		0.997452
534		90		10	0.90298
572	87			12	0.992554
592		10	90		0.90298
593	90		10		0.90298
597		10		90	0.90298
598	10		90		0.90298
599		90		10	0.90298
600		90		10	0.90298
605	12		87		0.992554
620	85		14		0.993533
735		75		25	0.996473
1590		83		16	0.994512
1672	33		66		1.0
1742	88		11		0.923564
1874	10	90			0.90298
1876			10	90	0.90298
1877			10	90	0.90298
1878			10	90	0.90298
1918	10		90		0.90298
1921	90			10	0.90298
1988	20	80			0.995493
1989	80	20			0.995493
1991		80		20	0.995493
2058	87		12		0.992554
2065		25		75	1.0
2161		14		85	0.993533
2291		90		10	0.90298
2887	12	87			0.992554
2889	87	12			0.992554
2899		16		83	0.994512
3675			7	92	0.999602
3684		7		92	0.999532
3685	92		7		0.999532
3687		7	92		0.999532
3689			92	7	0.999532
3692		7		92	0.999532
3700	88		3	7	0.998862
3702			92	7	0.999602
3703		7	92		0.999602
3704	7			92	0.999602
3833	94	5			0.998397
3999			38	61	1.0
4081	87		12		0.999964
4159			88	11	0.923564
4203	80			20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1482	1493	ACA ACA ACA ACA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain