SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene345

Length: 2265 nt

UniGene Fasta

>sp_v3.0_unigene345
ACACTTGGTCAATGATGGATTGCTCCATTATTTTATAGCTAAGCCATTGGATACACTTCTTGTTTCTTAAAAGAATTAGCAGATGCATTGATTTAAGGCCTTCTCAGAAGGAGTTCTTATTCTCTGTTGAAATAGATTTATACCCATGCCACCAATTAGGGCTGCTGATATTGCCTGAATGAGACTCTGAATTGTTCTGAATTCTTCGAGGTTGATTACTTTGGCAGAACAAGCTAAGGGAGATGGGTTTTTTGAGTACTCTATTGAGTTCCATTGGTTTTGGACTCGGCATCCCCACTGGGCTCGTTATTGGCTATTTCATGTTTTTTTACTTCCAGCCCAATGAGGTCCAGGAACCAATAAGCAGATTAGTTGGGGAACGCGATTCAAAAGATTTGCAAAGACTTTTACCAGAAATTCCATTGTGGGTCAAAAATCCTGATTATGATAGAGTTAATTGGATCAATAGGTTCCTCTTCGAGATGTGGCCTTATCTTGATAAGGCAATCTGTAAAATGATAAGGGACACGACAATGCGCACCGTTGACCAATATATTGGCCAATATAAGATAGAATCTATTGAATTTGAAACTCTTACATTGGGGACCATGCAGCCTACACTACAAGGCATCAAAGTCTTTGACACTCAAGAGGATGAGATGATCCTTGAACCTATTCTTAAATGGGCTGGAAACCCAAATATCATTATTGCAATAAAAGCACTTGGTATAAGGGCAACTGTACAGTTAGTGGATTTGCACATTTTCATTGTTCCACGGGTTATCTTGAAGCCTCTTGTGCCAACATTACCATGCTTTGGTAAGATATCAGTGTCCCTTATGGAGAAGCCACATGTTGACTTTGGACTAAAACTAGGTGGACTGGATCTTATGGCCATTCCTGGTCTCTACAAAATTGTGCAGGAGACTATTAAAGAAAAAGTTGCAGAATTATACTTGTGGCCAAAAACTCTTGAGATACCTATTATAGATGATCCCAGAGCTGCAAAGAAGCCTGTTGGAATGCTCTATGTGAAGGTTATTAGGGCAGTTAACCTGAAGAAGATGGACATTCTGGGGAAATCTGATCCGTATGTGAAACTGAAACTGACAGAAGACAGGTTACAATCAAGGAAAACGACAGTTAAAATGAGTAACCTGAATCCTGAATGGAATGAGGTTTTCACCTTTGCTGTGAAAGATCCCAATTCTCAAGTTCTCGAACTTCAAGCCTATGATTGGGACAAGGTTGGTACGCATGACAAGCTGGGGATGCAAATTCTTCCTCTCAAATATGTTACAGCACATGAACCAAAGATCTTTACTCTCGAACTTCTCAAGTCTATGAATCCAAATGATCCTCATAATAAAAGGTCACGTGGACAAATCATTGTAGAGTTGACTTATAAGCCATTCAAGGAGGATGATAGCTCTGTCAGGGATTATGAAAATGCAACTGAAGTTGATAAAGCTCCTGAAGGCACACCAGAAGGTGGAGGCTTGTTGGTAGTAATTGTCCACGAGGCAGAAGATGTTGAAGGCAAACATCATACTAATCCTTATGTAACACTGCTTTTTATGGGAGATGAAAGGAAGACTAAGCGAGTGAAGAAGAATAGGGATCCAAGATGGGAGCAAGATTTTGAATTTATGCTTGAAAAGCCACCGGTCGGTGAAAAGCTCCAAGTAAAAGTATTAAGCAAGGGTTCTAGCTTTAACTGGCATAGGAAGGAAGATCTCGGGTATGTGGATATTAATCTGTCAGATGTTGTGAATAACAAACGAATCAATGAGATTTATCATCTTATTAATTCAAGGAATGGAAAAATTCATATTGAGTTGCAATGGAAAACTTGATGTGTGCATTCCCAGAGACTCGGATCTAGCATGTCATTGCTTTTCCTTTATGATTTTATTTAGAATGGTGCTTTCTCGATCTTTTGCAATCAGCAATGACATATTTTTCATCCTAGCCTACAAGAAAAATAATGATGAGGAAAACATTTGTATTGTACAAAATGGCTTTTCTGCATTTTAAGTCCATTAAGAGCCCTGTGTACATGACCTGTAGGCTGTGAGTGTATGCGCAAGTAATTGTACCATTATTTTACAAAGTTGAAAGGCATCCTTTTCTTTGCTTCTGTTTGTTATTGATGTTGTAAGTTGAAGGCTCTTCTTTGACTTTGTAATCTATCTGTAATGAAACATTTCAAGGATCATTCATTTTCACTATAATAAATTGGCAATAACATCTATTACAATTAAG

Ace file of the UniGene sp_v3.0_unigene345

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	synaptotagmin A [Arabidopsis thaliana] gb\|AAK76510.1\| unknown protein [Arabidopsis thaliana] gb\|AAM15203.1\| expressed protein [Arabidopsis thaliana] gb\|AAD29817.2\| expressed protein [Arabidopsis thaliana] gb\|AAM65475.1\| unknown [Arabidopsis thaliana] gb\|A	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Calcium lipid binding protein, putative	-	-	2.142e-15	-

Source	Gene names
Sma3	At1g20080; At2g20990; At2g21010; At2g21040; At5g04220; B1274F11.3; F21E1_140; GSVIVT00014388001; GSVIVT00014392001; GSVIVT00017521001; GSVIVT00018176001; GSVIVT00023206001; GSVIVT00025228001; GSVIVT00036112001; NTMC2T1.1; NTMC2T1.2; NTMC2T1.3; NTMC2Type1.

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	kinase activity	GO:0016301	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	0.0	-
Sma3	C2 membrane targeting protein	IPR018029	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20080.1	SYTB, ATSYTB, NTMC2TYPE1.2, NTMC2T1.2, SYT2 Calcium-dependent lipid-binding (CaLB domain) family protein chr1:6962236-6964912 FORWARD LENGTH=537	58%
RefSeq	Arabidopsis thaliana	NP_565495.1	synaptotagmin A [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002306182.1	plant synaptotagmin [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRA0

Fln msg:

Fln protein: MGFLSTLLSSIGFGLGIPTGLVIGYFMFFYFQPNEVQEPISRLVGERDSKDLQRLLPEIPLWVKNPDYDRVNWINRFLFEMWPYLDKAICKMIRDTTMRTVDQYIGQYKIESIEFETLTLGTMQPTLQGIKVFDTQEDEMILEPILKWAGNPNIIIAIKALGIRATVQLVDLHIFIVPRVILKPLVPTLPCFGKISVSLMEKPHVDFGLKLGGLDLMAIPGLYKIVQETIKEKVAELYLWPKTLEIPIIDDPRAAKKPVGMLYVKVIRAVNLKKMDILGKSDPYVKLKLTEDRLQSRKTTVKMSNLNPEWNEVFTFAVKDPNSQVLELQAYDWDKVGTHDKLGMQILPLKYVTAHEPKIFTLELLKSMNPNDPHNKRSRGQIIVELTYKPFKEDDSSVRDYENATEVDKAPEGTPEGGGLLVVIVHEAEDVEGKHHTNPYVTLLFMGDERKTKRVKKNRDPRWEQDFEFMLEKPPVGEKLQVKVLSKGSSFNWHRKEDLGYVDINLSDVVNNKRINEIYHLINSRNGKIHIELQWKT*

Protein Length: 539

Fln nts: ACACTTGGTCAATGATGGATTGCTCCATTATTTTATAGCTAAGCCATTGGATACACTTCTTGTTTCTTAAAAGAATTAGCAGATGCATTGATTTAAGGCCTTCTCAGAAGGAGTTCTTATTCTCTGTTGAAATAGATTTATACCCATGCCACCAATTAGGGCTGCTGATATTGCCTGAATGAGACTCTGAATTGTTCTGAATTCTTCGAGGTTGATTACTTTGGCAGAACAAGCTAAGGGAG_-_ATGGGTTTTTTGAGTACTCTATTGAGTTCCATTGGTTTTGGACTCGGCATCCCCACTGGGCTCGTTATTGGCTATTTCATGTTTTTTTACTTCCAGCCCAATGAGGTCCAGGAACCAATAAGCAGATTAGTTGGGGAACGCGATTCAAAAGATTTGCAAAGACTTTTACCAGAAATTCCATTGTGGGTCAAAAATCCTGATTATGATAGAGTTAATTGGATCAATAGGTTCCTCTTCGAGATGTGGCCTTATCTTGATAAGGCAATCTGTAAAATGATAAGGGACACGACAATGCGCACCGTTGACCAATATATTGGCCAATATAAGATAGAATCTATTGAATTTGAAACTCTTACATTGGGGACCATGCAGCCTACACTACAAGGCATCAAAGTCTTTGACACTCAAGAGGATGAGATGATCCTTGAACCTATTCTTAAATGGGCTGGAAACCCAAATATCATTATTGCAATAAAAGCACTTGGTATAAGGGCAACTGTACAGTTAGTGGATTTGCACATTTTCATTGTTCCACGGGTTATCTTGAAGCCTCTTGTGCCAACATTACCATGCTTTGGTAAGATATCAGTGTCCCTTATGGAGAAGCCACATGTTGACTTTGGACTAAAACTAGGTGGACTGGATCTTATGGCCATTCCTGGTCTCTACAAAATTGTGCAGGAGACTATTAAAGAAAAAGTTGCAGAATTATACTTGTGGCCAAAAACTCTTGAGATACCTATTATAGATGATCCCAGAGCTGCAAAGAAGCCTGTTGGAATGCTCTATGTGAAGGTTATTAGGGCAGTTAACCTGAAGAAGATGGACATTCTGGGGAAATCTGATCCGTATGTGAAACTGAAACTGACAGAAGACAGGTTACAATCAAGGAAAACGACAGTTAAAATGAGTAACCTGAATCCTGAATGGAATGAGGTTTTCACCTTTGCTGTGAAAGATCCCAATTCTCAAGTTCTCGAACTTCAAGCCTATGATTGGGACAAGGTTGGTACGCATGACAAGCTGGGGATGCAAATTCTTCCTCTCAAATATGTTACAGCACATGAACCAAAGATCTTTACTCTCGAACTTCTCAAGTCTATGAATCCAAATGATCCTCATAATAAAAGGTCACGTGGACAAATCATTGTAGAGTTGACTTATAAGCCATTCAAGGAGGATGATAGCTCTGTCAGGGATTATGAAAATGCAACTGAAGTTGATAAAGCTCCTGAAGGCACACCAGAAGGTGGAGGCTTGTTGGTAGTAATTGTCCACGAGGCAGAAGATGTTGAAGGCAAACATCATACTAATCCTTATGTAACACTGCTTTTTATGGGAGATGAAAGGAAGACTAAGCGAGTGAAGAAGAATAGGGATCCAAGATGGGAGCAAGATTTTGAATTTATGCTTGAAAAGCCACCGGTCGGTGAAAAGCTCCAAGTAAAAGTATTAAGCAAGGGTTCTAGCTTTAACTGGCATAGGAAGGAAGATCTCGGGTATGTGGATATTAATCTGTCAGATGTTGTGAATAACAAACGAATCAATGAGATTTATCATCTTATTAATTCAAGGAATGGAAAAATTCATATTGAGTTGCAATGGAAAACTTGA___TGTGTGCATTCCCAGAGACTCGGATCTAGCATGTCATTGCTTTTCCTTTATGATTTTATTTAGAATGGTGCTTTCTCGATCTTTTGCAATCAGCAATGACATATTTTTCATCCTAGCCTACAAGAAAAATAATGATGAGGAAAACATTTGTATTGTACAAAATGGCTTTTCTGCATTTTAAGTCCATTAAGAGCCCTGTGTACATGACCTGTAGGCTGTGAGTGTATGCGCAAGTAATTGTACCATTATTTTACAAAGTTGAAAGGCATCCTTTTCTTTGCTTCTGTTTGTTATTGATGTTGTAAGTTGAAGGCTCTTCTTTGACTTTGTAATCTATCTGTAATGAAACATTTCAAGGATCATTCATTTTCACTATAATAAATTGGCAATAACATCTATTACAATTAAG

Fln Alignment:

Contig345___MGFLSTLLSSIGFGLGIPTGLVIGYFMFFYFQPNEVQEPISRLVGERDSKDLQRLLPEIPLWVKNPDYDRVNWINRFLFEMWPYLDKAICKMIRDTTMRTVDQYIGQYKIESIEFETLTLGTMQPTLQGIKVFDTQEDEMILEPILKWAGNPNIIIAIKALGIRATVQLVDLHIFIVPRVILKPLVPTLPCFGKISVSLMEKPHVDFGLKLGGLDLMAIPGLYKIVQETIKEKVAELYLWPKTLEIPIIDDPRAAKKPVGMLYVKVIRAVNLKKMDILGKSDPYVKLKLTEDRLQSRKTTVKMSNLNPEWNEVFTFAVKDPNSQVLELQAYDWDKVGTHDKLGMQILPLKYVTAHEPKIFTLELLKSMNPNDPHNKRSRGQIIVELTYKPFKEDDSSVRDYENATEVDKAPEGTPEGGGLLVVIVHEAEDVEGKHHTNPYVTLLFMGDERKTKRVKKNRDPRWEQDFEFMLEKPPVGEKLQVKVLSKGSSFNWHRKEDLGYVDINLSDVVNNKRINEIYHLINSRNGKIHIELQWKT
B8LRA0_____________MGFVSTVVGFFGFGVGVTIGVLIGYFLFIYFQPTDVKDPIIRPLGELDSKTLEGLLPEIPLWVKNPDYDRVDWLNTFIHEMWPYLDKAICQIIRDKTKPMIEQYVGKFKIESIEIETLTLGTLPPTLQGMKVYDTQEKELIMEPVLKWAGNPNVIVAVKAFGLRATVQLVDLQVFAIPRVTLKPLVPSFPCFAKIFVSLMEKPHVDFGLKLLGGDLMAIPGLYQFAQEMIKEQVANLYLWPKTLEVPILDQ-RATHKPVGMLHVKVVRAINLKKKDMLGKSDPYVKLKMTGEKLPSKKTTVKSSNLNPEWNEEFKFVVKDPESQALELSVYDWEKVGSHEKMGIQTYDLKELTPSETKSVTLNLLKSLDPNDPQNAKARGQITIEMTYNPFKEDENSPADDEDSV-VEKAPEGTPAGGGLLVVRVLEAEDVEGKHHTNPYVRLLFKGEEKKTKPVKKNRDPRWDQEFEFMLEDPPVNDKIHVEVMSKGSSLALHSRESLGYVDINLSDVVNNKRINEKYHLIDSKNGKLQLELLWRS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1733	75	25			0.996473
1736		25	75		0.996473
1737	75		25		0.996473
1738	75			25	0.996473
1741		25		75	0.996473
1744		75		25	0.996473
1747		25	75		0.996473
1749	75		25		0.996473
1751	25		75		0.996473
1752		25		75	0.996473
1753			75	25	0.996473
1754		25	75		0.996473
1781	75		25		0.996473
2042	72			27	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain