SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene311

Length: 2169 nt

UniGene Fasta

>sp_v3.0_unigene311
GGGCCAGGCTGGACGCTAACTAACCACAGAGAGAGCGAACCATAGAATAGAACGTCGTGACCTTGGCTGTCACTCAATCAACGAGAGAACCACGAGAAAGGGGAAAGACGGAAAGGGTAGGAGAAGGCGGAGCCAAAAAAAACGGAACCTGGGGGCATTCGAAAGGGAAAAACCAGAGAGCGTGCTGCTGCCGGAAGAGGGAGGCCCGAGGCATGTGGCGTATTATTCCGGCGGATCGCTGCATAGAAGACTGAGGACAGCCAAGTAACCAGCTCGTGGCCCGTGGTGAAGGTCCAACTGATTGAGGTCTGTTATAAATTGACAATTATAGATGACGAACCTTGTTCAGCCAACCAGGAGAATCTTAGCATATCATTATGGCAGGAAATGGGATTCAGTGCTTAGGAGTCTCAGCACCCAGGCTGCAAGTACTTCCACTACCCCACAGCCACCTCCACCCCCTCCACCTCCAGAGAAAACCCACTTTGGAGGACTCAAAGATGAGGATCGCATTTTCACAAATTTATATGGATTGCATGATCCATTTCTGAAAGGAGCCATGAAACGTGGGGATTGGTACAGAACAAAGGATTTGGTACTAAAAGGTTCTGATTGGATTGTGAATGAAATGAAGAAATCAGGTCTACGTGGCCGGGGAGGTGCAGGATTTCCATCCGGTTTAAAATGGTCATTTATGCCAAAAGTATCGGATGGACGACCATCATATCTTGTTGTGAATGCCGATGAGAGTGAACCAGGGACCTGCAAAGATAGAGAGATTATGAGACATGATCCCCACAAGCTTATTGAGGGATGCTTGATTGCAGGTGTCGGTATGCGTGCTAGTGCTGCATACATTTACATTAGAGGGGAATATGTAAATGAGAGGAAAGCCTTACAGAATGCTCTCAATGAAGCATATGCAGCAGGATTCTTAGGGAAAAATGCCTGTGGTTCAGGTTATGATTTTGATGTTCATATTCACTTTGGAGCTGGTGCTTACATATGTGGGGAAGAGACTGCTTTACTTGAGAGCTTGGAGGGAAAACAAGGCAAGCCTCGATTGAAACCTCCTTTTCCTGCCAATGCAGGTCTTTATGGCTGTCCAACAACAGTTACAAATGTGGAGACAGTGGCTGTTTCGCCAACTATACTCCGCAGGGGCCCTGAGTGGTTTGCCAGCTTTGGCCGCAAGAACAATTCGGGGACAAAGCTTTTTTGCATTTCAGGACATGTGAACAAGCCGTGCACTGTGGAAGAGGAGATGAGTATCTCTCTCAAGGAACTAATTGAGAGACATGCAGGAGGTGTACGAGGTGGGTGGGACAATTTGTTAGCAGTCATCCCTGGAGGTTCTTCTGTTCCTCTCCTTCCCAAAAACATTTGTGATGATGTATTGATGGATTATGATGCGTTGAAAGCTGTGATATCAGGTCTTGGAACAGCTGCTGTTATTGTCATGGATAAGTCAACTGATGTAGTAGATGCAATAGCTCGTCTTTCCTATTTCTATAAGCATGAAAGCTGTGGTCAGTGTACCCCATGCAGAGAAGGGACGGGATGGCTTTGGATGATCATGGAAAGACTGAAGGTTGGGAATGCTAAACTTGAAGAGATAGACATGCTCCAAGAATTGACAAAGCAGATTGAAGGTCATACAATTTGTGCATTGGGTGATGCTGCAGCATGGCCCGTCCAAGGTCTTATTCGTCATTTCAGGCCTGAGCTGGAAAAAAGAATTCGTGAACGAGCTAGGATGGAAGTCATGGAAGCTGTGGGTTAAATAGGTTTAATACTTCTGAGCTTCTGAATGGGAATATGGTTTATTGAGACTTTATGTTTAAACACTAATAGCTTCTGCTTTTTATTTTTTATTCTAATTTTGTTCTTTCATTGCCTGGGGAAACACAATCATCAAAGTTTTTAATAAACTGGAAGAACATAGGGATTAATTTTTTCAAATGGAGGTCACTACAGAGATCTTAGCTGCTGTAAACACCAAGGATCTTGCCATTAAGAATTGTGACTGCAGAAATATGAATGCTATACAGGATAATGTTTCATAAATTTGCACCACTTTCCAGTGCTTGATATTGCTTCGTTCAGTAGTTCAATATATGTAAAATGAACCGTAGATACTTCAATAAGTGACTTTTTAAGTTTACATGG

Ace file of the UniGene sp_v3.0_unigene311

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NADH dehydrogenase n=3 Tax=core eudicotyledons RepID=Q43840_SOLTU	-	-	93%
FL-Next	sp=NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	93%
Sma3	NADH dehydrogenase	-	-	-

Source	Gene names
Sma3	At5g08530;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	respiratory chain complex I	GO:0045271	Cellular Component	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	NAD binding	GO:0051287	Molecular Function	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site	IPR001949	-	-
Sma3	NADH:ubiquinone oxidoreductase, 51kDa subunit	IPR011538	-	-
Sma3	NADH ubiquinone oxidoreductase, F subunit	IPR011537	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G08530.1	CI51 51 kDa subunit of complex I chr5:2759848-2761726 REVERSE LENGTH=486	93%
RefSeq	Arabidopsis thaliana	NP_196470.1	NADH dehydrogenase (ubiquinone) flavoprotein 1 [Arabidopsis thaliana]	93%
RefSeq	Populus trichocarpa	XP_002315622.1	predicted protein [Populus trichocarpa]	93%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q9FNN5

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MTNLVQPTRRILAYHYGRKWDSVLRSLSTQAASTSTTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVLKGSDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLIEGCLIAGVGMRASAAYIYIRGEYVNERKALQNALNEAYAAGFLGKNACGSGYDFDVHIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCISGHVNKPCTVEEEMSISLKELIERHAGGVRGGWDNLLAVIPGGSSVPLLPKNICDDVLMDYDALKAVISGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIRHFRPELEKRIRERARMEVMEAVG*

Protein Length: 485

Fln nts: GGGCCAGGCTGGACGCTAACTAACCACAGAGAGAGCGAACCATAGAATAGAACGTCGTGACCTTGGCTGTCACTCAATCAACGAGAGAACCACGAGAAAGGGGAAAGACGGAAAGGGTAGGAGAAGGCGGAGCCAAAAAAAACGGAACCTGGGGGCATTCGAAAGGGAAAAACCAGAGAGCGTGCTGCTGCCGGAAGAGGGAGGCCCGAGGCATGTGGCGTATTATTCCGGCGGATCGCTGCATAGAAGACTGAGGACAGCCAAGTAACCAGCTCGTGGCCCGTGGTGAAGGTCCAACTGATTGAGGTCTGTTATAAATTGACAATTATAG_-_ATGACGAACCTTGTTCAGCCAACCAGGAGAATCTTAGCATATCATTATGGCAGGAAATGGGATTCAGTGCTTAGGAGTCTCAGCACCCAGGCTGCAAGTACTTCCACTACCCCACAGCCACCTCCACCCCCTCCACCTCCAGAGAAAACCCACTTTGGAGGACTCAAAGATGAGGATCGCATTTTCACAAATTTATATGGATTGCATGATCCATTTCTGAAAGGAGCCATGAAACGTGGGGATTGGTACAGAACAAAGGATTTGGTACTAAAAGGTTCTGATTGGATTGTGAATGAAATGAAGAAATCAGGTCTACGTGGCCGGGGAGGTGCAGGATTTCCATCCGGTTTAAAATGGTCATTTATGCCAAAAGTATCGGATGGACGACCATCATATCTTGTTGTGAATGCCGATGAGAGTGAACCAGGGACCTGCAAAGATAGAGAGATTATGAGACATGATCCCCACAAGCTTATTGAGGGATGCTTGATTGCAGGTGTCGGTATGCGTGCTAGTGCTGCATACATTTACATTAGAGGGGAATATGTAAATGAGAGGAAAGCCTTACAGAATGCTCTCAATGAAGCATATGCAGCAGGATTCTTAGGGAAAAATGCCTGTGGTTCAGGTTATGATTTTGATGTTCATATTCACTTTGGAGCTGGTGCTTACATATGTGGGGAAGAGACTGCTTTACTTGAGAGCTTGGAGGGAAAACAAGGCAAGCCTCGATTGAAACCTCCTTTTCCTGCCAATGCAGGTCTTTATGGCTGTCCAACAACAGTTACAAATGTGGAGACAGTGGCTGTTTCGCCAACTATACTCCGCAGGGGCCCTGAGTGGTTTGCCAGCTTTGGCCGCAAGAACAATTCGGGGACAAAGCTTTTTTGCATTTCAGGACATGTGAACAAGCCGTGCACTGTGGAAGAGGAGATGAGTATCTCTCTCAAGGAACTAATTGAGAGACATGCAGGAGGTGTACGAGGTGGGTGGGACAATTTGTTAGCAGTCATCCCTGGAGGTTCTTCTGTTCCTCTCCTTCCCAAAAACATTTGTGATGATGTATTGATGGATTATGATGCGTTGAAAGCTGTGATATCAGGTCTTGGAACAGCTGCTGTTATTGTCATGGATAAGTCAACTGATGTAGTAGATGCAATAGCTCGTCTTTCCTATTTCTATAAGCATGAAAGCTGTGGTCAGTGTACCCCATGCAGAGAAGGGACGGGATGGCTTTGGATGATCATGGAAAGACTGAAGGTTGGGAATGCTAAACTTGAAGAGATAGACATGCTCCAAGAATTGACAAAGCAGATTGAAGGTCATACAATTTGTGCATTGGGTGATGCTGCAGCATGGCCCGTCCAAGGTCTTATTCGTCATTTCAGGCCTGAGCTGGAAAAAAGAATTCGTGAACGAGCTAGGATGGAAGTCATGGAAGCTGTGGGTTAAATAGGTTTAATACTTCTGAGCTTCTGAATGGGAATATGGTTTATTGAGACTTTATGTTTAAACACTAATAGCTTCTGCTTTTTATTTTTTATTCTAATTTTGTTCTTTCATTGCCTGGGGAAACACAATCATCAAAGTTTTTAATAAACTGGAAGAACATAGGGATTAATTTTTTCAAATGGAGGTCACTACAGAGATCTTAGCTGCTGTAAACACCAAGGATCTTGCCATTAAGAATTGTGACTGCAGAAATATGAATGCTATACAGGATAATGTTTCATAAATTTGCACCACTTTCCAGTGCTTGATATTGCTTCGTTCAGTAGTTCAATATATGTAAAATGAACCGTAGATACTTCAATAAGTGACTTTTTAAGTTTACATGG

Fln Alignment:

Contig311___EKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWYRTKDLVLKGSDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLIEGCLIAGVGMRASAAYIYIRGEYVNERKALQNALNEAYAAGFLGKNACGSGYDFDVHIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNSGTKLFCISGHVNKPCTVEEEMSISLKELIERHAGGVRGGWDNLLAVIPGGSSVPLLPKNICDDVLMDYDALKAVISGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIRHFRPELEKRIRERARMEVMEA
Q9FNN5_____________EKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERLNLEKARREAYAAGLLGKNACGSGYDFEVYIHFGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFSSFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLIPKNICEDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERMKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIRERAERELLQA

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1896		80		20	0.995493
1947	75			25	1.0
1966	16		83		0.999991
1993			87	12	1.0
2003		91		8	0.999766
2017	87		12		1.0
2027	7		92		0.999602
2029		7	92		0.999602
2031		92		7	0.999602
2055	14		85		1.0
2075	10		90		0.90298
2096		11		88	0.923564
2119	25			75	0.996473
2120	50			50	1.0
2121	25	25		50	0.995533
2122	50			50	1.0
2123	25			75	0.996473
2125			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain