SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene274

Length: 1377 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene274

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MtN3_slv domain containing protein	-	-	4.0e-25	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Seven-transmembrane-domain protein 1	-	-	1.533e-17	-

Source	Gene names
Sma3	AT4g10850; At1g21460; At1g66770; At3g28007; At4g15920; At5g40260; At5g50800; B1065E10.2-1; F24J8.9; F25I24.60; F4N21_10; F8M12.20; GSVIVT00006690001; GSVIVT00007217001; GSVIVT00014310001; GSVIVT00016113001; GSVIVT00016115001; GSVIVT00020754001; GSVIVT0002

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	pollen wall assembly	GO:0010208	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	RAG1-activating protein-1-related	IPR004316	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3		IPR018169	-	-
Sma3		IPR018179	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G62850.1	AtVEX1, SWEET5, AtSWEET5 Nodulin MtN3 family protein chr5:25230204-25231527 REVERSE LENGTH=240	45%
RefSeq	Arabidopsis thaliana	NP_201091.2	nodulin MtN3-like protein [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002321585.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ39

Fln msg:

Fln protein: MAIADTIRLVVGIIGNIISIFMFLSPLPTFYKVWKWRATRGFSGFPYPMTLLNCALWVLYGMPFVHPNSILVATVNGAGVLFETLYTTLFLVFCKNKKERLKVVGLLVVISIFFAAVAAFSLALEHTHKRRTLVVGTICIIFNVFMYASPLSIMRRVIKTKSVKYMPFYLSLGCTANGFIWTAYGCIHFDINLVLPNGLGALLGVSQLILYAVYYGSTKWDEDEERETGDGVDKKADGNSQPMKILSGGGRGDNAERSGIP*

Protein Length: 263

Fln nts: TGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGTACTTTCTGTTACCAAAAATAGCGCTGAGCTCTTTCCTTCCTTCTTTATATTAGAGTGATTGCCCCTACTTCTGTGATTTTCCTTGGACGAAAGA_-_ATGGCCATCGCGGATACAATTCGTTTGGTTGTAGGAATAATAGGGAACATTATTTCGATTTTTATGTTCCTTTCGCCCCTGCCAACATTTTACAAAGTTTGGAAATGGAGAGCCACCCGAGGGTTTTCAGGATTTCCATACCCTATGACTCTACTGAACTGCGCATTATGGGTGCTGTATGGCATGCCCTTTGTTCACCCCAACAGCATTCTTGTGGCCACGGTAAACGGAGCAGGTGTGCTCTTTGAAACACTGTACACTACTTTGTTCCTGGTTTTCTGCAAGAACAAAAAGGAGAGGCTGAAAGTGGTGGGACTGCTGGTGGTCATCAGCATATTCTTTGCTGCTGTGGCAGCTTTCAGCTTAGCTTTGGAGCACACACACAAGAGACGAACCTTGGTTGTCGGAACGATCTGTATCATCTTCAATGTGTTCATGTATGCCTCACCTTTGTCCATCATGAGAAGGGTTATTAAAACTAAAAGTGTGAAGTACATGCCCTTCTACCTTTCCTTGGGTTGCACTGCCAATGGCTTCATCTGGACAGCTTATGGCTGCATACACTTTGACATTAATCTTGTGCTGCCCAATGGACTGGGAGCGCTGCTGGGCGTATCCCAGTTGATACTGTATGCCGTATATTACGGGAGTACTAAGTGGGATGAAGACGAAGAGAGAGAAACCGGTGATGGTGTAGATAAGAAAGCCGATGGTAATTCACAGCCTATGAAAATCCTATCTGGCGGAGGACGTGGCGATAATGCTGAGAGGAGTGGAATTCCTTGA___GGTCCAGGAGTCCATTACATTGCATGCGCCACGTCTGAACATTGATTATTCGTGGTTATTGCAGACAGACAATCCCGGCGCAAAATAAAATCGGATAGGATTTTGAGTTGTTTTTTTATTTAGATAGCTGCAGTGACTCATAAATGAGATTTAGTTTCTTCAGTAATTTTGTAGATTTCGCTAGTCAGTTTTAATGGACCCCTGCTCTTGTTCTGGCAAGTTGCAGCAATATCTTTGGCTGCAAACTTTCATTATTAACGCTGATATTCACATCTAATGGTTAAATCTTGCTGCTGGTTTTTGGATATTTTCTACTATTGTTTCTGGAAAGTGAAATGGTCACTCGCTTTTTTCTATTTTAGAAAATAGAAAGACCGGTAGTTTGTTATGGAAATTCAGATGGATAAGACTTGACTGTTTCCAATTGAATATTTATCCTTTAAATGGATTTATCTTGTA

Fln Alignment:

Contig274___VVGIIGNIISIFMFLSPLPTFYKVWKWRATRGFSGFPYPMTLLNCALWVLYGMPFVHPNSILVATVNGAGVLFETLYTTLFLVFCKNKKERLKVVGLXXXXXXXXXXXXXXXXXXEHTHKRRTLVVGTICIIFNVFMYASPLSIMRRVIKTKSVKYMPFYLSLGCTANGFIWTAYGCIHFDINLVLPNGLGALLGVSQLILYAVYYGSTKWDEDEERETGDGVDKKADGNSQPMKILSGGGRG
A9NQ39_____________IFGIFGNITALTLFLAPLITFWTIIKNKSTEQFSGFPYVSTLLNCLLSAWYGLPFVSPNNLLVSTVNGTGAAIELCYVIVFLFYIRDKKYRVKIFGLLVIVLKFFALVALVSLLALHGHARK-LFCGFAAAIFSICMYASPLSIMRTVIKTKSVKYMPFFLSLCVFLCGTSWFIFGLLGKDPFLAVPNGVGSALGAMQLILYAVY---KDWKKKDSNTWSPPVQEEGKAGADHMNAMEMGSYG

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1211	14		85		0.993533
1244		25	75		0.996473
1248	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain