SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene252

Length: 1729 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene252

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Chromatin remodeling complex subunit	-	-	2.211e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	4.796e-07	-
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	1.482e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	1.482e-06	%
Sma3	Lipopolysaccharide biosynthesis	00540	1.482e-06	%
Sma3	Folate biosynthesis	00790	1.482e-06	%
Sma3	Metabolic pathways	01100	1.482e-06	%

Source	Gene names
Sma3	At2g46020; At3g06010; At3g06400; At3g57300; At5g18620; At5g19310; B1329D01.23; BRM; CHLREDRAFT_135484; CHLREDRAFT_150334; CHLREDRAFT_188131; CHLREDRAFT_196757; CHLREDRAFT_6783; CHR1515; CHR1519; CHR1522; CHR1523; CHR1527; CHR1529; CHR1530; CHR1534; CHR350

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chromatin remodeling complex	GO:0016585	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	nucleosome binding	GO:0031491	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	embryo sac development	GO:0009553	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3	regulation of gene expression, epigenetic	GO:0040029	Biological Process	-
Sma3	retrograde transport, endosome to Golgi	GO:0042147	Biological Process	-
Sma3	ATP-dependent chromatin remodeling	GO:0043044	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3		IPR000910	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	HSA	IPR006562	-	-
Sma3		IPR012287	-	-
Sma3	Vps54-like	IPR012501	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase/SANT-associated, DNA binding	IPR014012	-	-
Sma3		IPR014021	-	-
Sma3		IPR014778	-	-
Sma3	Glutamine-Leucine-Glutamine, QLQ	IPR014978	-	-
Sma3	ATPase, nucleosome remodelling ISWI, HAND domain	IPR015194	-	-
Sma3	SLIDE domain	IPR015195	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G66750.1	DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 chromatin remodeling 1 chr5:26649050-26652869 FORWARD LENGTH=764	63%
RefSeq	Arabidopsis thaliana	NP_201476.1	chromatin remodeling 1 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002310223.1	chromatin remodeling complex subunit [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD70

Fln msg:

Fln protein: MNEAGNEETDDKKRVQVISKLHAILRPFLLRRLKEDVEKNLPLKKEIILYARMTEDQRKIQEHLLNKSLIPYLHARSEYGRAVKTSLDNLMIQLRKNFNHPDLLQSQFEISYHYPPVEKLMEQCGKFQLLDRLLKHLRARNHKVLIFSQWTRVLDLLDYCLSESGHNMCRIDGSVKLDDRQRQIKDFNDPNSKLHVFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLCTAHSAECRMLKVAFDKLKLERVVIEKGQFHQERTKSSFLKEHELLALLQQERDEEEELVQSDEISESNLLKLLDRSDMIKDSIKTSGTATDSLPLKGPGWEIVVRGGQVGGMLSSIEGYKQNDDENLKQE*

Protein Length: 382

Fln nts: CATAATAACCTGGGAGAGCTTTGGTCATTGCTAAATTTCATCCTCCCTCAAATTTTCACGTCCCTCCGTGAATTTGAATCATGGTTTGATTTTTCTGGAAGGCAG_-_ATGAATGAGGCGGGCAATGAAGAAACTGATGATAAAAAAAGAGTTCAAGTAATATCAAAGTTGCATGCAATCCTTAGACCTTTTCTTCTCAGAAGGTTGAAAGAAGATGTTGAGAAGAACCTTCCTTTAAAGAAGGAAATAATATTATATGCTCGTATGACTGAAGATCAGAGAAAAATCCAGGAGCATCTACTGAACAAAAGTCTTATTCCATATCTACATGCACGGTCGGAATATGGTAGAGCAGTGAAAACCAGTCTGGACAATCTGATGATTCAACTGCGCAAGAATTTCAACCATCCAGATCTTTTGCAGTCACAGTTTGAGATATCCTATCATTATCCTCCAGTAGAGAAATTGATGGAACAATGTGGTAAATTTCAGCTTCTGGACAGGCTTCTAAAACATTTAAGAGCTCGGAATCATAAGGTTCTGATATTTTCGCAATGGACAAGAGTGTTGGACCTACTGGACTACTGCTTGAGTGAGAGCGGACACAATATGTGCCGCATTGATGGGTCTGTTAAACTGGATGATAGGCAAAGACAGATCAAAGATTTTAATGATCCAAACAGTAAACTTCATGTCTTTTTGCTAAGCACACGTGCTGGTGGACTTGGGATTAATCTTACTGCTGCAGATACTTGCATCATTTATGACAGTGACTGGAATCCACAAATGGATTTGCAAGCTATGGATCGATGCCATAGGATTGGGCAAACCAAACCTGTGCATGTCTACAGGCTCTGCACAGCTCACTCAGCTGAGTGCCGGATGCTCAAAGTAGCATTTGACAAGTTGAAGTTGGAGCGTGTTGTGATTGAGAAAGGACAGTTTCACCAGGAACGAACAAAATCCAGTTTCTTAAAGGAACATGAGCTTTTAGCTTTACTTCAGCAAGAAAGAGATGAAGAAGAGGAGCTTGTTCAAAGTGATGAGATTAGTGAATCAAATCTGTTAAAGCTCCTGGACCGCAGTGACATGATTAAAGATTCAATTAAAACTAGTGGCACTGCAACAGATTCTCTCCCTCTCAAGGGACCAGGATGGGAGATAGTAGTACGTGGTGGACAAGTTGGGGGTATGCTGTCATCCATAGAAGGCTACAAACAGAATGATGACGAGAATCTGAAGCAGGAATAG___AAATCAAAGGAAAATATGACCTGTTTAATTTTTCTTGCCAACAGTTTTGTCACTACAGAAGCTTTGTATGCAACATAAATGTTGCACTATTTTTGCAGGAGTTGTAGTCAGCATGATGACAAGAATCTGTAGCAAGGATAGAAACCAAAGGAAAATATGACTTTAGTACGTTCTTAACTGCTAATTTACGTGGCATCAGTTTTGTCTAGTTGCACTTCAGAAGCTTCAACTATAATGTGCAATTTGCTTGCAGCATATATGTTGCACTAGTTTTGTAGGTGCTGTAGGCATTTTTCTCCTTTGATTGTACAGTATTTCTAAAATGCTTTTGACAGTAAAATATATACTTGGAACCATGTAACTTCCTGTCATCCGAAAAGTTGTAAGTTTTGGTTTCTACTGCCATGTTATAGGCAATTTTGTGGTCTGGACTTGTCTTTCCACTGATATCAAATAAATCTTGATGATGTTGTGACCTTTT

Fln Alignment:

Contig252___MNEAGNEETDDKKRVQVISKLHAILRPFLLRRLKEDVEKNLPLKKEIILYARMTEDQRKIQEHLLNKSLIPYLHARSEYGRAVKTSLDNLMIQLRKNFNHPDLLQSQFEISYHYPPVEKLMEQCGKFQLLDRLLKHLRARNHKVLIFSQWTRVLDLLDYCLSESGHNMCRIDGSVKLDDRQRQIKDFNDPNSKLHVFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLCTAHSAECRMLKVAFDKLKLERVVIEKGQFHQERTKSSFLKEHXXXXXXXXXXXXXXXXXXXXXXXXSNLLKLLDRSDMIKDSIKTSGTATDSLPLKGPGWEIVVRGGQVGGMLSSIEGYKQNDDENL
D5AD70_____________MNETGNEETEDKKKVQVISKLHAILRPFLLRRLKEDVEKNLPSKKEIILYARMTEDQRKIQEHLLNKSLITYLHARSEYGKAMKTRLENLMLQLRKNFNHPDLLQSQFEISYHYPPVEKLMEQCGKFQLLDRLLKHLRARNHKVLIFSQWTRVLDLLDYCLSESGHDMCRIDGSVKLHDRQRQIKDFNDPNSNLHIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLCTSHSAECRMLKVAFDKLKLERVVIEKGQFHQERTNPGFSKESELLALLQQERDEEEELVQSDEISESNLLKLLDRRDMINDSLKVGGAGTDSLPLKGPGWEIVVRGGQVGGMLSSIEGYKEYDDKNL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
960	75			25	0.996473
961	25			75	0.996473
1378	28		71		1.0
1379		28		71	1.0
1381			71	28	1.0
1382		71		28	1.0
1491	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain