SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene250

Length: 3436 nt

UniGene Fasta

>sp_v3.0_unigene250
AGAGAAAGGAAGTGGGTTGTGATAAGCCTGAGCTTTTATGCAAGTGGGTTGTGATAAACCTGAGCTTTTATGCAAAATTTTATGTAATCCACATGGGATTGAGTAATTGAATTGGGTATCGATGATGACGAGAAATGTAACGCATGAAAAGGATTTCAAGGATTTGGGCAATGAAATAACGAGAATCCATCGCTACCCACATGACAAAGCCCATGCTGATTTCAATAATTTTGCATGAATTCAATGCTGGGCTTTTGTGATAGAGTTTGATAAGTACTGGTGTTTGTTGAAAGGTTTTAAGTGGGTTATGAAGTGGATCGGTCTGAGGAGGTAATAGCAATGGTGGCCGCCAAGATGATGAAATGGATGCCATGGCCTGTTCTATCTACTCAGAAATTTCAGCTGGGTCTTGTTCTGCATGAGCTTGAAGGGCTTTGTCTTAATGGTGGCTCGGAAAAGTTGAATTTGATGGTTCATATTAAATGGAAAGGGTCAAGAGGCAAATTGGGTTCCAGGTTCAGAAGCGTTGAGAGAAACTGTACTGCTATGCGGACTGTTGAGGATAAGGGTACTGTGGAATGGAATGAGAGCTTTGATCATGTCTGTGTTCTTACCATGCTCAGAGGCAGTGCGTTTCATCGGTGGGATGTTGCCTTTGAGGTCATCAATGCCCCGGAAAATGATCTGAATAGCAGACTGTCAGTTGTAGGGACAGCTTTTCTTAACATTGCGGAGTTTGTTTCATATGGGAAAACCATGGCACAAACCAACAAGATTCCATTTTCTTGTTGTGTTGGAGGTGCAACAACAGAGGCAGCACTTGTGGTAACTCTGAACTTCATCCATCTTCAGAATGACCAGGAGCCATTTGACCCCGTTCAAAAGCTTCTAGTTCCCTTGTCATGCATAATACCTTTTGTGTCAGAAAAGGATACTCCCAAGAGACCCGATAAATATTTTTCGGACGAGGATGGAAGTGCTTGCAAACAATCTCCACTCAGTGAAGAATGTGAATCTGCTGATTTATTTGACTCTGAATCTACTGAAGAGGGTGAAGTGGATGAAGCGATGGATGGGGATGATTTGATCTCTGGGAGTTATGACACTTTGGCTGCAGCAAATCTTTCTGCTGGCCCTATTTATCTGGATTGCGAAGAATATGAAAATGGAGACAATGAGTTGACAAACTCAGGGTCAAGTTTTGATTCTCTTCCCAAACTCATTGACGAGCCATCTTCTCCAGACTCTGATCTTGCCAGTCAACAACCTGCAGTGCGTAAACTTCTTTCCTGGAAAAAAAGGAAGTTCAGTTTTAAATCCCCAAAACCAAGGGGAGAGCCATTGTTAAATAAGGCATATGGAGAGGAGGGGGGAGATGATATTGACTTTCATCGTCGACAATCAGGCTCTCCCAATGATCCCTTTTATTTCGATGATAAGGGTAAAAATGGAATGAATACAATCATTTCTGCGTTTGGAGATGATCAATTCACAATAGGCAGTTGGGAACAGAAGGATATAGTTAGTAGAGATGGTCAGATGAAGTTGTCAACACAAGTATTTTTTGGTTCAATTGATCAGCGTAGTGAAAGGGCTGCGGGTGAGAGTGCTTGTACTGCCCTGGTAGCTGTTATTGCTGATTGGTTGCATAGTAACCCAAATACTATGCCAATCAAATCACAATATGATATGCTAATACGAGAAGGATCTCAGGAATGGAGGAGACTCTGTGAGGTTGATGATTACAAAGAGAGATTTCCTGATAGACATTTTGATTTGGACACAGTATTACAGGCTAAGATACGGCCTTTATCTGTAGTTCCGGAAAAGTCCTTTGTTGGCTTCTTTAGGCCTGAAGGTATGGGAGATTCATTTGACTTTCTGCAAGGAGCAATGTCTTTTGACAATATTTGGGATGAGATTACCAAAGCAAATATGGTAGAGAGTCAAAATAATGAGGCACAGATTTACATAGTCAGCTGGAATGACCATTTTTTCCTTCTCAAGGTTGAAAAGGAAGCATTCTACATAATAGATACACTTGGGGAAAGATTGTTTGAAGGGTGTAATCAGGCCTATATTTTAAAGTTTGATCAGGAGACAGCATTATACCAGTTGCCACCAAAAGATCAGAAGAAAGAAGAAGAGAAGAGTGCTGTCAGTGAAAAGGCTGTTACGGCAAAGGATTCAAAGTCTGCAGCAACAAAAGATCCAAAATCTACAGCAACAAAAGATGCAAAATCTTCAGCAGCAAAAGATGCAAAATCTTCTGCAGTAGCAAAAGATTCAAAATCCCTGTCAGCAAAGGATTTGAAGTCTACAATAGCAGAGAATTCAAAATCTTCAACTGCAGAGGTTTCAAAATCTCCAGGAACAGAGAATGCAATTCAACAGAATCAAGAAAGGTCAGTAGTTGAAATTGGAGACACAAAAGAACCCGAGACCTCCAAAAATGATAATGACGAAAAGCTGATATGTAAAGGGAAGGAATCTTGCAAAGCATTTATCAATGGATTTTTAGCAGCTCTTCCACTAAGAGAATTGCAAGTAGATATGGAAAAGGGCTTAATGGGGAAAATCTCGTTACATCACCGCTTGCAGATTGAATTTCATCTCACAGCTCAATAATCTGGATTTCTCACTGTACATATTATTGATTTTACTTTCATGGCAGAATGTTTTACATATTATCTGACACACAGGTAGTATTGACAATATAACATGCTTGGAAAGAACATTAGCATTGTACCAATCTAGCACCATCTGAACTTCAAAATCTCAGTTGGAAAGAGCAATAATCGGTTGGATTTGGGCTAACAAGTAGCAAAGAGTGAAGGAGTTTGTATTTTCTAGAGTTAGCCTTTGTGCTAGTAGGATGGCTATTACGTTATGTCATCAGGAGAAGAAATCTGAGTTATATAATGCTTTCTGCCTTCATCCAAGAAGCGGAGATTGCATATTTCTTAGTTTAAAATCACGGCACTGTTATAATGTTTAAATGAGGATGAACTTGTCCAGGACTAGCTCAAAGGCATTGCAGTCAAGATGGCTGTTCAGTCCTCTAGAAATATTGACTGCTTATCCAAAGGGAAAAGAGTCCTTGTATACAGTTTATAATAATGTTCTGAGAGCTACGTGCAGTTATTCATGGGAATGTTTATGAAGCCAGGACATTGGAGAGATATGACCATAATAAAAGCTATGGCATGTGTGAAATTCTTGTTTGTATTCCAACCCTTGGTGGTTTGGAGCTTTGTGACGGTGTTTTTCAGTGTGTGAAAGTCAATGCAACTTGGTTTTTGTATCTCACATTTTAGCAACCTGTAATGTTTAATATTTGCTGTCTTCATCAATTTAGGTGTGAATGGCAACTCTACCAATAAATATGCCAAGTAAATAATGGAGGGGATTTCAGAAGAAAAGGTATTGGTGTTGA

Ace file of the UniGene sp_v3.0_unigene250

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	42%

Source	Gene names
Sma3	At2g10560; At2g25460; At3g11760; F26K24.5; GSVIVT00018275001; GSVIVT00027182001; GSVIVT00032660001; Os01g0194000; OsI_00747; OsJ_00723; OsJ_11915; OsJ_36904; P0001B06.8; P0671B11.39; PHYPADRAFT_124781; PHYPADRAFT_138790; POPTRDRAFT_561168; POPTRDRAFT_6690

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3		IPR001092	-	-
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3		IPR012335	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G11760.1	" unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match	45%
RefSeq	Arabidopsis thaliana	NP_187782.1	uncharacterized protein [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002309261.1	predicted protein [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: I1NAV7

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 17 aas,

Fln protein: MVAAKMMKWMPWPVLSTQKFQLGLVLHELEGLCLNGGSEKLNLMVHIKWKGSRGKLGSRFRSVERNCTAMRTVEDKGTVEWNESFDHVCVLTMLRGSAFHRWDVAFEVINAPENDLNSRLSVVGTAFLNIAEFVSYGKTMAQTNKIPFSCCVGGATTEAALVVTLNFIHLQNDQEPFDPVQKLLVPLSCIIPFVSEKDTPKRPDKYFSDEDGSACKQSPLSEECESADLFDSESTEEGEVDEAMDGDDLISGSYDTLAAANLSAGPIYLDCEEYENGDNELTNSGSSFDSLPKLIDEPSSPDSDLASQQPAVRKLLSWKKRKFSFKSPKPRGEPLLNKAYGEEGGDDIDFHRRQSGSPNDPFYFDDKGKNGMNTIISAFGDDQFTIGSWEQKDIVSRDGQMKLSTQVFFGSIDQRSERAAGESACTALVAVIADWLHSNPNTMPIKSQYDMLIREGSQEWRRLCEVDDYKERFPDRHFDLDTVLQAKIRPLSVVPEKSFVGFFRPEGMGDSFDFLQGAMSFDNIWDEITKANMVESQNNEAQIYIVSWNDHFFLLKVEKEAFYIIDTLGERLFEGCNQAYILKFDQETALYQLPPKDQKKEEEKSAVSEKAVTAKDSKSAATKDPKSTATKDAKSSAAKDAKSSAVAKDSKSLSAKDLKSTIAENSKSSTAEVSKSPGTENAIQQNQERSVVEIGDTKEPETSKNDNDEKLICKGKESCKAFINGFLAALPLRELQVDMEKGLMGKISLHHRLQIEFHLTAQ*

Protein Length: 764

Fln nts: AGAGAAAGGAAGTGGGTTGTGATAAGCCTGAGCTTTTATGCAAGTGGGTTGTGATAAACCTGAGCTTTTATGCAAAATTTTATGTAATCCACATGGGATTGAGTAATTGAATTGGGTATCGATGATGACGAGAAATGTAACGCATGAAAAGGATTTCAAGGATTTGGGCAATGAAATAACGAGAATCCATCGCTACCCACATGACAAAGCCCATGCTGATTTCAATAATTTTGCATGAATTCAATGCTGGGCTTTTGTGATAGAGTTTGATAAGTACTGGTGTTTGTTGAAAGGTTTTAAGTGGGTTATGAAGTGGATCGGTCTGAGGAGGTAATAGCA_-_ATGGTGGCCGCCAAGATGATGAAATGGATGCCATGGCCTGTTCTATCTACTCAGAAATTTCAGCTGGGTCTTGTTCTGCATGAGCTTGAAGGGCTTTGTCTTAATGGTGGCTCGGAAAAGTTGAATTTGATGGTTCATATTAAATGGAAAGGGTCAAGAGGCAAATTGGGTTCCAGGTTCAGAAGCGTTGAGAGAAACTGTACTGCTATGCGGACTGTTGAGGATAAGGGTACTGTGGAATGGAATGAGAGCTTTGATCATGTCTGTGTTCTTACCATGCTCAGAGGCAGTGCGTTTCATCGGTGGGATGTTGCCTTTGAGGTCATCAATGCCCCGGAAAATGATCTGAATAGCAGACTGTCAGTTGTAGGGACAGCTTTTCTTAACATTGCGGAGTTTGTTTCATATGGGAAAACCATGGCACAAACCAACAAGATTCCATTTTCTTGTTGTGTTGGAGGTGCAACAACAGAGGCAGCACTTGTGGTAACTCTGAACTTCATCCATCTTCAGAATGACCAGGAGCCATTTGACCCCGTTCAAAAGCTTCTAGTTCCCTTGTCATGCATAATACCTTTTGTGTCAGAAAAGGATACTCCCAAGAGACCCGATAAATATTTTTCGGACGAGGATGGAAGTGCTTGCAAACAATCTCCACTCAGTGAAGAATGTGAATCTGCTGATTTATTTGACTCTGAATCTACTGAAGAGGGTGAAGTGGATGAAGCGATGGATGGGGATGATTTGATCTCTGGGAGTTATGACACTTTGGCTGCAGCAAATCTTTCTGCTGGCCCTATTTATCTGGATTGCGAAGAATATGAAAATGGAGACAATGAGTTGACAAACTCAGGGTCAAGTTTTGATTCTCTTCCCAAACTCATTGACGAGCCATCTTCTCCAGACTCTGATCTTGCCAGTCAACAACCTGCAGTGCGTAAACTTCTTTCCTGGAAAAAAAGGAAGTTCAGTTTTAAATCCCCAAAACCAAGGGGAGAGCCATTGTTAAATAAGGCATATGGAGAGGAGGGGGGAGATGATATTGACTTTCATCGTCGACAATCAGGCTCTCCCAATGATCCCTTTTATTTCGATGATAAGGGTAAAAATGGAATGAATACAATCATTTCTGCGTTTGGAGATGATCAATTCACAATAGGCAGTTGGGAACAGAAGGATATAGTTAGTAGAGATGGTCAGATGAAGTTGTCAACACAAGTATTTTTTGGTTCAATTGATCAGCGTAGTGAAAGGGCTGCGGGTGAGAGTGCTTGTACTGCCCTGGTAGCTGTTATTGCTGATTGGTTGCATAGTAACCCAAATACTATGCCAATCAAATCACAATATGATATGCTAATACGAGAAGGATCTCAGGAATGGAGGAGACTCTGTGAGGTTGATGATTACAAAGAGAGATTTCCTGATAGACATTTTGATTTGGACACAGTATTACAGGCTAAGATACGGCCTTTATCTGTAGTTCCGGAAAAGTCCTTTGTTGGCTTCTTTAGGCCTGAAGGTATGGGAGATTCATTTGACTTTCTGCAAGGAGCAATGTCTTTTGACAATATTTGGGATGAGATTACCAAAGCAAATATGGTAGAGAGTCAAAATAATGAGGCACAGATTTACATAGTCAGCTGGAATGACCATTTTTTCCTTCTCAAGGTTGAAAAGGAAGCATTCTACATAATAGATACACTTGGGGAAAGATTGTTTGAAGGGTGTAATCAGGCCTATATTTTAAAGTTTGATCAGGAGACAGCATTATACCAGTTGCCACCAAAAGATCAGAAGAAAGAAGAAGAGAAGAGTGCTGTCAGTGAAAAGGCTGTTACGGCAAAGGATTCAAAGTCTGCAGCAACAAAAGATCCAAAATCTACAGCAACAAAAGATGCAAAATCTTCAGCAGCAAAAGATGCAAAATCTTCTGCAGTAGCAAAAGATTCAAAATCCCTGTCAGCAAAGGATTTGAAGTCTACAATAGCAGAGAATTCAAAATCTTCAACTGCAGAGGTTTCAAAATCTCCAGGAACAGAGAATGCAATTCAACAGAATCAAGAAAGGTCAGTAGTTGAAATTGGAGACACAAAAGAACCCGAGACCTCCAAAAATGATAATGACGAAAAGCTGATATGTAAAGGGAAGGAATCTTGCAAAGCATTTATCAATGGATTTTTAGCAGCTCTTCCACTAAGAGAATTGCAAGTAGATATGGAAAAGGGCTTAATGGGGAAAATCTCGTTACATCACCGCTTGCAGATTGAATTTCATCTCACAGCTCAATAA___TCTGGATTTCTCACTGTACATATTATTGATTTTACTTTCATGGCAGAATGTTTTACATATTATCTGACACACAGGTAGTATTGACAATATAACATGCTTGGAAAGAACATTAGCATTGTACCAATCTAGCACCATCTGAACTTCAAAATCTCAGTTGGAAAGAGCAATAATCGGTTGGATTTGGGCTAACAAGTAGCAAAGAGTGAAGGAGTTTGTATTTTCTAGAGTTAGCCTTTGTGCTAGTAGGATGGCTATTACGTTATGTCATCAGGAGAAGAAATCTGAGTTATATAATGCTTTCTGCCTTCATCCAAGAAGCGGAGATTGCATATTTCTTAGTTTAAAATCACGGCACTGTTATAATGTTTAAATGAGGATGAACTTGTCCAGGACTAGCTCAAAGGCATTGCAGTCAAGATGGCTGTTCAGTCCTCTAGAAATATTGACTGCTTATCCAAAGGGAAAAGAGTCCTTGTATACAGTTTATAATAATGTTCTGAGAGCTACGTGCAGTTATTCATGGGAATGTTTATGAAGCCAGGACATTGGAGAGATATGACCATAATAAAAGCTATGGCATGTGTGAAATTCTTGTTTGTATTCCAACCCTTGGTGGTTTGGAGCTTTGTGACGGTGTTTTTCAGTGTGTGAAAGTCAATGCAACTTGGTTTTTGTATCTCACATTTTAGCAACCTGTAATGTTTAATATTTGCTGTCTTCATCAATTTAGGTGTGAATGGCAACTCTACCAATAAATATGCCAAGTAAATAATGGAGGGGATTTCAGAAGAAAAGGTATTGGTGTTGA

Fln Alignment:

Contig250___VAAKMMKWMPWPVLSTQKFQLGLVLHELEG--LCLNGGSEKLNLMVHIKWKGSRGKLGS-RFRSVERNCTAMRTVEDKG----TVEWNESFDHVCVLTMLRGSAFHRWDVAFEVINAPENDLNSRLSVVGTAFLNIAEFVSYGKTMAQTNKIPFSCCVGGATTEAALVVTLNFIHLQNDQEPFDPVQKLLVP------------------LSCI------IPFVSEKDTPKRPDKYFSDEDGSACKQSPLSEECESADLFDSES---TEEGEVDEAMDGDDLI-SGSYDTLAAANLSAGPIYLDCEEYENGDNELTNSGSSFDSLPKLIDEPSSPDSDLASQQPAVRKLLSWXXXXXXXXXXXXX-GEPLLNKAYGEEGGDDIDFHRRQSGSPND---PFYFDDKGKNGMNTIISAFGDDQFTIGSWEQKDIVSRDGQMKLSTQVFFGSIDQRSERAAGESACTALVAVIADWLHSNPNTMPIKSQYDMLIREGSQEWRRLCEVDDYKERFPDRHFDLDTVLQAKIRPLSVVPEKSFVGFFRPEGMGDS-FDFLQGAMSFDNIWDEITKANMVESQNNEAQIYIVSWNDHFFLLKVEKEAFYIIDTLGERLFEGCNQAYILKFDQETALYQLPPKDQXXXXXXXXXXXXXXTAKDSKSAA-TKDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIAENSKSSTAEVSKSPGTENAIQQNQERSVVEIGDTKEPETSKNDNDEKLICKGKESCKAFINGFLAALPLRELQVDMEKGLMGKISLHHR-LQIEFHLT
I1NAV7_____________MVVKMMRWRPWPPLLSKKFQVRLHVRRLQGCDLLQNAALQGSRLVLEIRWKGPKLILGSLRWNSVARNFTKEADFELDGGGAAVVHWDEEFQTMCNLNGYRDNVFHPWEIAFTLFNGLNQRPKNKVPAIGTALLNIAEFASSTDQKDFDLNIPLTLTGGSGEPSPLLCISISLMELSVAQESLEPVQRSIVPVPSPSAKSGETALAEKDELSAIKAGLRKVMILTEFVSPKKAKKGCREEEGSEGRCSR-SEDGEYNYPLDSESLDDSEEGETDGGKEDSSVRKSFSYGTLASAN-AGGFFHSNARVNCNDEDWVYYSHRKSDVGCSQREDSTASSSQPYLVQSSKRSILPWRKRKLSFRSPKAYKGEPLLKKVYAEEGGDDIDFDRRQLSSDESLSLTWYKIEDDTSAHRSSISDFGDDSFAVGSWEQKEVTSRDGHMKLQTQVFFASIDQRSERAAGESACTALVAVIADWFQNNCDLMPIKSQLDSLIREGSSEWRNLCENDAYRERFPDKHFDLETVIQAKIRPLTVAPGKSFIGFFHPEGMDEGRFDFLHGAMSFDNIWDEISRAGQECPSNGEPHIYIVSWNDHFFILKVEYDCYYIIDTLGERLYEGCNQAYILKFDSNTMMYKTP---------NVAHSSDDKTSNDQQTVAEILDPNN-----------------------------------SQTQQVNSKEVDSVAGEKEQLRTEQEEQV--------------------ICRGKEACKEYIKSFLAAIPIRELEADAKKGLISSASLYHRLLQIEFHYT

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
377		66		33	0.997452
2394		80		20	0.995493
2395		22		11	0.999999
2538	50		50		1.0
2542		10	90		0.90298
2544	90			10	0.90298
2617		85		14	0.993533
2639	14			85	0.993533
2641			14	14	0.984337
2642		85	14		0.993533
2643			14	85	0.993533
2842	20		80		0.995493
3098	80			20	0.995493
3099	40		20		1.0
3101	80		20		0.995493
3103		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain