SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene247

Length: 2665 nt

UniGene Fasta

>sp_v3.0_unigene247
ATACCACTGCTTAAGCAGTCGTAACAACGCAGAACACGCGGGATTCATCTTCGACGTGAAGCTCAGGCAATGGCCTTGGTCAAAGGGTTTCGGCCTCATTGATTTATTTTTTCGTTCCATCTGGGATAAAAAAATTTGAAATTAATGTTAGTCTTGCATAGCGTGATTTCGATTCTCATAAGCCTTTGCGGAGGGAAATTGGCATAGAGATTTTTCACTTCCATCTGGGATAGAATTTTGAAACTAGTGTTCGTCTTGCATAGCGTGATTTCGTTTCTCATAAACCCCTGCGGAGGAAAATTGGCTTAAGGATTAGAAAAGATCAGGAATGGCATTAGAATCACCTACAATGAGCTGGGACAAGAAGGAAAGTCTTCCCAGGGAAGCAAAGGAAGACTATGGACGAAGATCAGCTAATCTCGATTTGAATAAGGCTGACGAGGGAGTTGAATATGATTATCAGCCTTATAAAGAAGAGCCAGAGAAGACTGAAAGCAATGGCAATCATCAAGTTCAAGCTCCTGTTCAATACCTACCTATGAAGATCGAAATGAATAGAAGCCCCGAGTCAAATAGATGCTCTCCATCTCTTTCAAAGTCGAGATCAGTCTCACCTGTTACGATACAGAACATGTCTGAAGGAAGAAGGGTGGCTTCCTCCCCTCGTAAAGATCAGACAGGGGATTGTCCTGGCAGGATGTCTGATTCACTTTGGAAATCTTCTCTGGGGCAATCACTTGCGAGAGACAGGTCGCCTTCTCCTTTAAGGGTTAAGTCACCTTCACCTGTTAAATGTATCTCCACTTCCCAGAGCAGACATATATCTTCTCCTACAAACTACACTTCACATTTATCTTATAGCCACCAAATATCCTCTCCCGCAAAGCCAAAATCCCCATTGCCCATTAATCACAGATCACCATCCTCTGAAAAGCATTCTCCTTCATCTGTTAAACTCAGCTCTGCCTCTCCTGCAAAGTATATGCCAGTTTCTCCGGGCAGGCGGGAATCAGCCTCACCTGCGAAGTATACTTCCCCTTCGCCTGTAAGGCACAGGTCATCTTCTACTCAGCAGGATGTATCACCTTATATTGGAAGGAAAAATTCTTCCTCTCCTCGAAAGGACGTATCACCTCCTCTGGGAAGGCACAGCTTTTCTCCTCGGAGAGATGCATCACCTTCTCCGGGAAGGCACAGGCCTTCTGATGTGAGGGATCTATCACCTTCTCCGGCAAGGCACATGCCTTCTCTTGCTCCCAGGGATGATGTATCACCTTCTCCGGGAAGGCAGAGGTCTCCACCTCCGAGGGATGTATCACCTTCTCTGAGAAGTCACAGGTCTTCCTCTCCCCGGAGGGTTGCATCACCTTCTCCAGGAACGAAAATGGGTTCTTCTAGGAGGAATTTATCACATTCTCCAGCTAGTCGCAGGTCTTCACCTCCACTGAGGGATGTATCACCTTCTCCGGGAAAGTATGGGTCTTCACCTCGGATGGATGTATCGGCTTCTCCAGGAAGGCACAGGACGACTCCCTCAAAACGAAGATCTTCAGTTGGCAGGTATATTTCTCCATCTCCAAAAAGGAGGCGGCATGATAGATCACAGACTGCTGGAAGGCGCGGTGTTTCTCCTGTCTATGGAAGAGGTTATCGGGATAGATCTCAATCAAGGTCTCCTCCGCGGGACTATTATCGAAGGTCACCTAGGGGCAGATATTCACCCAGGAGCAGATATTCGCCCAGGAGCAGATATTCGCCCAGACGAAGAACTCCTCCAAGGTATCATTCTCGACGTCGATCTCCAAGACGAAGGCAATGGTCACCCCCTCCTAACAGGAATACTGGTATTGGTAAACCGGGAAACAACTTATTTATAGCAGGATTTAGTTTTGATACCACAGAGAGGGACTTGGAGCGAAAGTTTAGTAGATTTGGTCGTGTTACTGATGTCCGTGTTGTTCGAGACAAGAGGTCTGGGGATTCTCGAGGTTTTGGGTTTTTAACACTTGAGCGAGATGAGGATGCAGATGCTGCGATAAGGGCACTAGACCAAACTGAGTGGAATGGTCGGATTGTTCTTATTGAGAAGGCGAAGACACCAACTCGTTACTGAATAAAGTTGATAGTTTTGTCTAGGAATTTTTACTAATTGCTTTTAGTGATATATATATTTTTATCAGAGAATTTTAAGGTTTTGAACTTGACAGAGTACCCAAAGCCCTATCAGGAATCATATATGATAAGTGACACTCAACGAACTCGTGTTCCATTTCCAGCAAATACGACTTAAGTTTTGGGTGCACGAGAAGTTCACATGATACCAGTTATTTTCTGAAGTATGTAATGTTAAGTCTTTGTATTTGTGTTAGCTTTCTTTAGTTTATTGTCTACAATTATTGTGTTGATGCTAGTTGAAGGACCATTGAATTCTGTAATCATATAAATTAAAGTTTGAACATGCAAGAGTAATTTATCTGCAGCTTATTTTGCAGATTGGGTTTCAGATGGTCGTAGTGAAGTGTTAAATAATATTTGATTCATATTATACGATATTATTTGAAGTAATTGATGGAACATTCTATAATATTGCCCAAATATGCTGTATTAGATGATAACTTCTTTTTTCATGCAATACTCTTTCAGGTCGCCAGCGGCTATCTGTACC

Ace file of the UniGene sp_v3.0_unigene247

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os01g0367300 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5JJM4_ORYSJ	-	-	8.0e-19	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%

Source	Gene names
Sma3	B1329D01.5; OsI_01937; OsJ_01776; P0784G04.6;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	isomerase activity	GO:0016853	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLI1

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 595 - 635

Fln protein: MALESPTMSWDKKESLPREAKEDYGRRSANLDLNKADEGVEYDYQPYKEEPEKTESNGNHQVQAPVQYLPMKIEMNRSPESNRCSPSLSKSRSVSPVTIQNMSEGRRVASSPRKDQTGDCPGRMSDSLWKSSLGQSLARDRSPSPLRVKSPSPVKCISTSQSRHISSPTNYTSHLSYSHQISSPAKPKSPLPINHRSPSSEKHSPSSVKLSSASPAKYMPVSPGRRESASPAKYTSPSPVRHRSSSTQQDVSPYIGRKNSSSPRKDVSPPLGRHSFSPRRDASPSPGRHRPSDVRDLSPSPARHMPSLAPRDDVSPSPGRQRSPPPRDVSPSLRSHRSSSPRRVASPSPGTKMGSSRRNLSHSPASRRSSPPLRDVSPSPGKYGSSPRMDVSASPGRHRTTPSKRRSSVGRYISPSPKRRRHDRSQTAGRRGVSPVYGRGYRDRSQSRSPPRDYYRRSPRGRYSPRSRYSPRSRYSPRRRTPPRYHSRRRSPRRRQWSPPPNRNTGIGKPGNNLFIAGFSFDTTERDLERKFSRFGRVTDVRVVRDKRSGDSRGFGFLTLERDEDADAAIRALDQTEWNGRIVLIEKAKTPTRY*

Protein Length: 596

Fln nts: ATACCACTGCTTAAGCAGTCGTAACAACGCAGAACACGCGGGATTCATCTTCGACGTGAAGCTCAGGCAATGGCCTTGGTCAAAGGGTTTCGGCCTCATTGATTTATTTTTTCGTTCCATCTGGGATAAAAAAATTTGAAATTAATGTTAGTCTTGCATAGCGTGATTTCGATTCTCATAAGCCTTTGCGGAGGGAAATTGGCATAGAGATTTTTCACTTCCATCTGGGATAGAATTTTGAAACTAGTGTTCGTCTTGCATAGCGTGATTTCGTTTCTCATAAACCCCTGCGGAGGAAAATTGGCTTAAGGATTAGAAAAGATCAGGA_-_ATGGCATTAGAATCACCTACAATGAGCTGGGACAAGAAGGAAAGTCTTCCCAGGGAAGCAAAGGAAGACTATGGACGAAGATCAGCTAATCTCGATTTGAATAAGGCTGACGAGGGAGTTGAATATGATTATCAGCCTTATAAAGAAGAGCCAGAGAAGACTGAAAGCAATGGCAATCATCAAGTTCAAGCTCCTGTTCAATACCTACCTATGAAGATCGAAATGAATAGAAGCCCCGAGTCAAATAGATGCTCTCCATCTCTTTCAAAGTCGAGATCAGTCTCACCTGTTACGATACAGAACATGTCTGAAGGAAGAAGGGTGGCTTCCTCCCCTCGTAAAGATCAGACAGGGGATTGTCCTGGCAGGATGTCTGATTCACTTTGGAAATCTTCTCTGGGGCAATCACTTGCGAGAGACAGGTCGCCTTCTCCTTTAAGGGTTAAGTCACCTTCACCTGTTAAATGTATCTCCACTTCCCAGAGCAGACATATATCTTCTCCTACAAACTACACTTCACATTTATCTTATAGCCACCAAATATCCTCTCCCGCAAAGCCAAAATCCCCATTGCCCATTAATCACAGATCACCATCCTCTGAAAAGCATTCTCCTTCATCTGTTAAACTCAGCTCTGCCTCTCCTGCAAAGTATATGCCAGTTTCTCCGGGCAGGCGGGAATCAGCCTCACCTGCGAAGTATACTTCCCCTTCGCCTGTAAGGCACAGGTCATCTTCTACTCAGCAGGATGTATCACCTTATATTGGAAGGAAAAATTCTTCCTCTCCTCGAAAGGACGTATCACCTCCTCTGGGAAGGCACAGCTTTTCTCCTCGGAGAGATGCATCACCTTCTCCGGGAAGGCACAGGCCTTCTGATGTGAGGGATCTATCACCTTCTCCGGCAAGGCACATGCCTTCTCTTGCTCCCAGGGATGATGTATCACCTTCTCCGGGAAGGCAGAGGTCTCCACCTCCGAGGGATGTATCACCTTCTCTGAGAAGTCACAGGTCTTCCTCTCCCCGGAGGGTTGCATCACCTTCTCCAGGAACGAAAATGGGTTCTTCTAGGAGGAATTTATCACATTCTCCAGCTAGTCGCAGGTCTTCACCTCCACTGAGGGATGTATCACCTTCTCCGGGAAAGTATGGGTCTTCACCTCGGATGGATGTATCGGCTTCTCCAGGAAGGCACAGGACGACTCCCTCAAAACGAAGATCTTCAGTTGGCAGGTATATTTCTCCATCTCCAAAAAGGAGGCGGCATGATAGATCACAGACTGCTGGAAGGCGCGGTGTTTCTCCTGTCTATGGAAGAGGTTATCGGGATAGATCTCAATCAAGGTCTCCTCCGCGGGACTATTATCGAAGGTCACCTAGGGGCAGATATTCACCCAGGAGCAGATATTCGCCCAGGAGCAGATATTCGCCCAGACGAAGAACTCCTCCAAGGTATCATTCTCGACGTCGATCTCCAAGACGAAGGCAATGGTCACCCCCTCCTAACAGGAATACTGGTATTGGTAAACCGGGAAACAACTTATTTATAGCAGGATTTAGTTTTGATACCACAGAGAGGGACTTGGAGCGAAAGTTTAGTAGATTTGGTCGTGTTACTGATGTCCGTGTTGTTCGAGACAAGAGGTCTGGGGATTCTCGAGGTTTTGGGTTTTTAACACTTGAGCGAGATGAGGATGCAGATGCTGCGATAAGGGCACTAGACCAAACTGAGTGGAATGGTCGGATTGTTCTTATTGAGAAGGCGAAGACACCAACTCGTTACTGAATAAAGTTGATAGTTTTGTCTAGGAATTTTTACTAATTGCTTTTAGTGATATATATATTTTTATCAGAGAATTTTAAGGTTTTGAACTTGACAGAGTACCCAAAGCCCTATCAGGAATCATATATGATAAGTGACACTCAACGAACTCGTGTTCCATTTCCAGCAAATACGACTTAAGTTTTGGGTGCACGAGAAGTTCACATGATACCAGTTATTTTCTGAAGTATGTAATGTTAAGTCTTTGTATTTGTGTTAGCTTTCTTTAGTTTATTGTCTACAATTATTGTGTTGATGCTAGTTGAAGGACCATTGAATTCTGTAATCATATAAATTAAAGTTTGAACATGCAAGAGTAATTTATCTGCAGCTTATTTTGCAGATTGGGTTTCAGATGGTCGTAGTGAAGTGTTAAATAATATTTGATTCATATTATACGATATTATTTGAAGTAATTGATGGAACATTCTATAATATTGCCCAAATATGCTGTATTAGATGATAACTTCTTTTTTCATGCAATACTCTTTCAGGTCGCCAGCGGCTATCTGTACC

Fln Alignment:

Contig247___MALESPTM-SWDKKESLPREAKEDY-GRRSANLDLNKA---DEGVEYDYQPYKEEPEKTESNGNHQVQAPVQYLPMKIEMNRSPEXXXXXXXXXXXXXXXXXTIQNMSEGRRVASSPRKDQTGDCPGRMSDSLWKSSLGQSLARD---------RSPSPLRVKSPSPVKC--------------------ISTSQSRH-ISSPTNYTS-------HLSYS------------HQISSPAKPKSPLPINHRXXXXXXXXXXXXXXXXXXXXXYMPVSPGR--RESASPAKYTSP----------SPVRHRSSSTQQDVSPYIGRKNSSSPRKDVSPPLGRHSFS-PRRDASPSPGRHRPSDV--RDLSPSPARHMP-SLAPRDDVXXXXXXXXXXXXXDVXXXXXXXXXXXXXXXXXXXXGTK--MGSSRRNLXXXXXXXXXXXXXXDVSPSPGKYGSSPR---MDVSASPGRHRTTPSKRRSSV--GRYISPSPKRRRHDRSQTAGRRGVSPVYGR
B8LLI1_____________MALKSPTTRNLDEQTEEHRDDAQTYHARRSAHLDLNLAVTRDETDGDDYYP--------------NVKEEVQPYQIDMDMNGGEQHKSSLLTTSSRH------VESTSQLRRSRSVSPPLRLSPSHGRELFSLGRGQVGSSFDQHIDSSGIISVRSPSPVRHRSPSPAKTPLQSDSDLRQYSLSPGRVPPMSPSSARHPVTSPGRTMSGSPPPKRHRSPSSGQTPPSPFCGRHELTSRDPMASPSPVR-----LMSPSPRRTQQRSLSPANYRSPSPGRACQKSPSPLQYRLPSPGRTHKMSLSPVKQRSHFSRKDSSPSPARHSSPSPARHSSPSPRRYSRDVKQRDRSTSPGRHSPQDVKQRKLSPSPRRQSPRDVQERDMLPPRRYSPQNVKQRDESPSQNRYSPRDVKQRDVSPQDIKGRDGSPQRR------YSPRDVKQRDRSPSSRRY--SPRDVKRDRSFSPLRQR-SPRRYRSPPPRGKY-SPEDIRQRRDRSLSRSPMRRKDGYGR

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
204	83			16	0.999991
373		20		80	0.995493
490		14		85	0.993533
497	77	22			0.999999
498	77		22		0.999999
500		22	77		0.999999
502		77		22	0.999999
503	77		22		0.999999
505		22		77	0.999999
507	77			22	0.999999
509		77	22		0.999999
510	77		22		0.999999
511	77	22			0.999999
512			77	22	0.999999
513			22	77	0.999999
522	22	77			0.999999
784	90		10		0.90298
1032		90		10	0.90298
1091	90			10	0.90298
1155		22		77	0.999999
1217		90		10	0.90298
1414		14		85	0.993533
1482		88		11	0.923564
1488	10	90			0.90298
1490		90	10		0.90298
1523	88			11	0.923564
1712	83		16		0.994512
1865	90		10		0.90298
1866	90			10	0.90298
1869			10	90	0.90298
1871		10		90	0.90298
1872		10		90	0.90298
1876	90		10		0.90298
1879	88			11	0.923564
1881		11	88		0.923564
1883		11		88	0.923564
1885		11		88	0.923564
1917	12		87		0.992554
1918	87			12	0.992554
1926	14		85		0.993533
1989			85	14	0.993533
2166	10			90	0.90298
2174	14			85	0.993533
2175		14		85	0.993533
2178		87		12	0.992554
2548	40	60			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain