SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene217

Length: 1610 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene217

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase [Arabidopsis thaliana]	-	-	0.0	60%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	54%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	1.808e-29	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	6.148e-26	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	2.221e-20	-
Sma3		EC:2.7.11.3-	-	9.958e-07	-

Source	Gene names
Sma3	AT1G08590; AT1G28440; AT1G31420; AT1G34110; AT1G75820; AT2G33170; AT3G49670; AT4G20270; AT4G26540; AT4G28490; AT4G28650; AT4g20270; AT4g26540; AT5G25930; AT5G48940; AT5G49660; AT5G61480; AT5G63930; AT5G65700; AT5G65710; At1g08590; At1g17230; At1g28440; At

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	microsporocyte differentiation	GO:0010480	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	interspecies interaction between organisms	GO:0044419	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	gametophyte development	GO:0048229	Biological Process	-
Sma3	floral organ development	GO:0048437	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G34110.1	Leucine-rich receptor-like protein kinase family protein chr1:12417331-12421246 REVERSE LENGTH=1072	63%
RefSeq	Arabidopsis thaliana	NP_174673.3	leucine-rich receptor-like protein kinase [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002304699.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Overlapping hits, possible frame ERROR between 830 and 826, query STOP codon too far from subject stop. Distance to subject end: 48 aas, putative chimeric sequence, your sequence is shorter than subject: 372 - 1145

Fln protein: SSLETHHSTHVGAVTILVCILSGIIALALCTGWYLVFKTGRQFTQELIRDDFSWPWTFIPFQKLNFTIENVLENLTETNIIGKGCSGVVYKADMPSGEVIAVKKLWPSKRDDAKEQQDAFASEIEILGNIRHRNIVKLLGYCTNRRVQLLLYNYIPNGNLAQLLHERRILDWDTRYKIAVGAAQGLSYLHHDCVPAILHRDVKCNNILLDARFEPYLADFGLAKLMTASDFHLAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGIVLLEILTWxxxGAVESPIGDGLHIVEWVKRMIRSCEPILNILDSRLRGMPDPMIQEMSQALGIALLCVNSTPGERPTMKEVVALLKEVKHPPEECSKMAEPLMKS*

Protein Length: 373

Fln nts: GTTCTTCTCTTGAAACCCATCATTCAACCCATGTTGGAGCAGTCACTATCCTCGTCTGCATTTTGTCTGGCATCATAGCATTGGCTTTGTGCACAGGATGGTATTTAGTTTTTAAAACAGGCAGACAATTTACGCAGGAGTTGATCCGAGATGATTTCTCTTGGCCCTGGACATTCATTCCCTTCCAAAAGCTCAACTTTACGATAGAAAATGTTCTCGAGAACCTGACAGAAACTAATATCATCGGTAAAGGTTGTTCTGGAGTTGTTTACAAAGCTGACATGCCGAGTGGAGAAGTGATTGCAGTGAAGAAACTTTGGCCTTCTAAGAGGGATGATGCAAAAGAACAACAGGATGCCTTTGCCTCAGAAATAGAGATCCTTGGCAATATTCGCCATCGTAATATTGTGAAACTACTTGGGTATTGCACCAATCGGCGAGTTCAGCTTCTTCTCTACAACTACATACCAAATGGGAATCTGGCTCAATTACTCCATGAGAGGAGGATTCTTGACTGGGATACACGGTACAAAATTGCAGTTGGGGCAGCTCAAGGCCTCTCATATTTGCACCATGATTGTGTGCCTGCAATTCTGCACAGGGATGTCAAATGCAATAACATACTTCTGGATGCAAGGTTTGAGCCATATTTAGCCGATTTCGGCCTTGCCAAGCTGATGACTGCTTCTGATTTTCATCTTGCGATGTCCAGGGTTGCTGGTTCATATGGCTACATTGCTCCTGAGTATGGCTACACAATGAACATTACAGAGAAGAGTGATGTATACAGCTATGGAATTGTTCTCCTTGAGATTTTGACATGGxxxxxxxxxGGTGCAGTGGAATCACCCATAGGTGATGGATTGCATATAGTGGAATGGGTAAAACGGATGATCCGGAGCTGTGAACCTATATTGAACATTCTGGATTCAAGGCTCAGGGGAATGCCTGATCCAATGATCCAGGAGATGTCTCAGGCACTTGGCATAGCTCTACTTTGTGTTAATTCTACGCCCGGGGAAAGGCCAACAATGAAGGAGGTAGTTGCTTTGCTGAAGGAAGTGAAGCATCCACCTGAGGAGTGCTCAAAGATGGCTGAACCTCTCATGAAAAGTTGATTGCATATCTGCAATAATTCTCTATGAGGCTTATTGACAATGTATATATTATAGTGGAAGCAGTCTTAGTTGCAGAAAACTTTTGCTTGAGGTGGTCTTATCAATTAAGCACAACCCTCATTCTGTTTTAGCAGTTGGATTTCTGTGGAAGAATCAGCTCGGCTGTCATTGGAATTGTAATTGCCAACAAAAGGAGAATATCCATAACCATAAAGGGGATGTTCTCTAGCATTTTTACCAACTAATCTAAACTGGACAGCAACTGCAAATACACCAACCTTTTTTCAACCTTGCAAAATTTGCAGTGTTATGTCTTGTTAGTCATTCAGCTATCTTATTATTGTTTCCCCGGAACTCTGAACTGAAAAAGGAATTCATGTGAGTTTTTTTCAAATTGCAAGCATTAAAATCATTCTTCTGAAGCCATGATAAGAACAATATCAAATTTTAAATATTGTTTGAGTGAAGGACAATAAGATTGCCCCAGTGTACTT

Fln Alignment:

Contig217___HHSTHVGAVTILVCILSGIIALALCTGWYLVFKTGRQFTQELIRDDFSWPWTFIPFQKLNFTIENVLENLTETNIIGKGCSGVVYKADMPSGEVIAVKKLWPSKRDDAKE--QQDAFASEIEILGNIRHRNIVKLLGYCTNRRVQLLLYNYIPNGNLAQLLHERR-ILDWDTRYKIAVGAAQGLSYLHHDCVPAILHRDVKCNNILLDARFEPYLADFGLAKLMTASDFHLAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGIVLLEILTxxxAVESPIGDGLHIVEWVKRMIRSCE--PILNILDSRLRGMPDPMIQEMSQALGIALLCVNSTPGERPTMKEVVALLKEVKHPPEECSKMAEPLMK
Q9FEU2_____________HFEQRVFEVKLVMILLFSVTAVMMILGIWLVTQSGEWVTGKWRIPRSGGHGRLTTFQKLNFSADDVVNALVDSNIIGKGCSGVVYKAEMGNGDVIAVKKLWTGKESECEKVRERDSFSAEVNTLGAIRHRNIVRLLGCCTNGRSKLLMYDYMPNGSLGGLLHEKRSMLDWEIRYNIVLGVRRGLSYLHHDCRPPILHRDVKANNILLGSQYEPYLADFGLAKLVDSADFNRSSTTVAGSYGYIAPEYGYTMKITQKIDVYSFGVVLLEVVTxxxPIDPTIPEGVHLVEWARDAVQSNKLADSAEVIDPRLQGRPDTQIQEMLQVLGVAFLCVNSNPDERPTMKDVAALLKEIRHDCHDYNGKADLLLK

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
972	16	83			0.994512
974		83	16		0.994512
975	83		16		0.994512
1046		33		66	0.997452
1153		16		83	0.994512
1387	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain