SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158

Length: 1536 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene158

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein L19 [Arabidopsis thaliana] emb\|CAB39934.1\| putative protein [Arabidopsis thaliana] emb\|CAB78206.1\| putative protein [Arabidopsis thaliana] gb\|AAS76282.1\| At4g11630 [Arabidopsis thaliana] dbj\|BAD94523.1\| putative protein [Arabidopsis thal	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Sma3	50S ribosomal protein L19, putative	-	-	9.54e-13	-

Source	Gene names
Sma3	24.t00054; 27.t00049; AT4g11630; At1g24240; At4g11630; At4g17560; At5g11750; At5g47190; F3I6.17; GSVIVT00009980001; GSVIVT00011414001; GSVIVT00015971001; MICPUN_87955; MQL5.4; OSJNBb0056C19.18; Os02g0205000; OsI_06303; OsI_07457; OsJ_05821; OsJ_06959; P04

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L19	IPR001857	-	0.0	-
Sma3	Ribosomal protein L19, conserved site	IPR018257	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G11630.1	Ribosomal protein L19 family protein chr4:7019793-7021068 FORWARD LENGTH=225	68%
RefSeq	Arabidopsis thaliana	NP_192900.1	ribosomal protein L19 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002318674.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NTE5

Fln msg:

Fln protein: MEREARRLQVQMLSREEEINRPFPRLVPPAKKEPEVEYELKDAIRHVKAAIPHITCQPSSVRVESNIIQSQALVQLKQCLFPAALHEASMVASYLYGGGHFSRQSRAIATTSTMKNSQDESDSSNGVDPVQEVAPRIKIKRLTKTAKHIMQILDAEAVQSVKTEREIPDIKPGHIVQLKVEVPENKRRVSVLKGIVIARRNAGLNSTFRIRRQVAGVGVESVFPLYSPNIKEIKVLDQKKVRRAKLYYLRDKMGSGK*

Protein Length: 259

Fln nts: GAAAGAAGGTTTGGGGTTGAAACCGCAC_-_ATGGAAAGAGAGGCCCGAAGGCTTCAAGTCCAGATGTTGAGTCGCGAGGAGGAGATTAATAGACCATTCCCACGGCTAGTACCACCTGCCAAGAAGGAGCCCGAAGTAGAGTATGAATTGAAGGATGCCATTCGGCATGTCAAGGCTGCTATACCACATATCACTTGTCAGCCATCTTCTGTAAGGGTGGAAAGTAATATTATTCAATCACAAGCATTAGTTCAGTTGAAGCAGTGCCTTTTCCCAGCTGCATTACATGAAGCTTCTATGGTGGCATCTTATCTTTATGGCGGAGGTCACTTCAGCAGACAGTCTCGAGCAATAGCAACCACGTCAACCATGAAAAATTCCCAGGATGAAAGTGATTCCTCTAATGGTGTTGATCCTGTTCAGGAAGTAGCCCCTCGAATCAAAATTAAAAGGCTCACCAAAACTGCAAAGCACATAATGCAGATTCTAGATGCAGAGGCAGTGCAATCTGTTAAGACAGAGAGGGAGATTCCAGATATCAAGCCAGGTCATATCGTACAGCTCAAAGTGGAAGTGCCTGAGAATAAGCGTAGAGTATCAGTCCTTAAAGGAATAGTCATTGCAAGACGAAATGCTGGTTTGAATTCAACTTTTAGGATACGAAGGCAAGTTGCCGGTGTTGGAGTGGAGTCCGTTTTTCCTCTCTATTCACCAAATATCAAGGAAATAAAAGTGTTGGACCAGAAAAAGGTGCGCAGAGCAAAACTTTACTATCTCCGAGATAAGATGGGCTCTGGTAAATAA___ATTGCAGGTTTCTTGGAATTGTCAGCTGCAGTAGTTGCAACTGTGTTGACCAACAACAATATTCTGTTCTTTGGCATAGAAGTCAACATAAAATGCTGGCTTATGCTGCGGGATTTTTTTTTCATGTTGACGAGCTATTACTTTAATTCAAGGAATGCCTTGAAGTTATATTGTAAGCTATATGACCTGTTGACATTAGTGGATAAAGTATCTGGTCCACTCAAATGCAATTATAGCATTGGTTTCAGTAGCCTTCGATGTCTTACTATATTCTTAATAAGTTTGTGGCCTTCTTTATGATAAATAGCAGGTTAGTGGAGGATAAAACAGAGGAGAAATATACAATCTACTGTCTAGCACTAAAAAATGCCCTTGGGAAACTGCTTTGTTTCAGTCGAGTACTTTTCAGCATTGACAAGCAAGCTTTAAGTTTCAGGTATTTAAAAACTGCACCTCTTGGGAGAGGCAGTAATTAGCCTAGAGTGTGAAATTCATTTGGATCATCAAACGCAGGTGTTACTAGAGCTAAAGTGTCCACAGCTAGTATCTATAGGAATATCATATATGTTTCTCTACACTTGTGTACATTGGTGGTTCAGGGCTGTTCTTATTCTAATGCTTCTAATTGTGGGATCAAACATTTGAAGGCAAGATTTTGGAGATTTTCAAGGATGACATATCTGACCTATTTTCCTATGACGCTGGTATGACTGTATTCTTGGTGTGATCAACCA

Fln Alignment:

Contig158___AIATTSTMKNSQDESDSSN-GVDPVQEVAPRIKIKRLTKTAKHIMQILDAEAVQSVKTEREIPDIKPGHIVQLKVEVPENKRRVSVLKGIVIARRNAGLNSTFRIRRQVAGVGVESVFPLYSPNIKEIKVLDQKKVRRAKLYYLRDKM
A9NTE5_____________AVSESEEEGGTQNEVASSDESTLEVSEEQPKLPSRKPRIKLGQIMGILHKQAIEATEKERPTPDVRTGDVVELRVYVPETRRRFSVYKGIVISRQNAGIHTTIRIRRIIAGVGIEIVFPLYSPNLKEIKVVKHRKVRRARLYYLREKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain