SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157

Length: 3396 nt

UniGene Fasta

>sp_v3.0_unigene157
ATGGATCGAAGAAGAAGAAGAAGATTCGAACCCTGGCCCCGGAAGCAGAAACATTGAAGGCAAAGGCTACTGGTTCAGGCCAGAACCTGTTCGAGACCATGTGGACGCGGAAAAAATTCGACCTCTTGGGCAAAAAACAGAAAAGCCAAGGGCAACGCGTGGGCTTGGCCCGTTCAAGAGCCATAGAAAAGAGGAAGAAGACTCTCTTACAAGAATACAAACAAAGTGGAAAAGCTAATGTTTTCTTGGACAGGCGGTTTGGGGAAAATGATGACACTCTTGAAGATGCAGATAAGGCTATTATTAGATTCCAGCGTGAGCGACAGTCACGGATGCTTAAGAAGGACAAATACACTTTAGCAGATGGAGAAGATGACATTCTTACTCATCATGGTGCTGCTCTATCGACTCTGGATGACTTTGAGGATGAGATTGTTGAAGATGATGATGATGTAGATGACACGATTACCAGGAAGCTGAATTTTGGTGGGGGTGCTGATCAAGACACAATCCCAAATGCTGCTGTTTTACAAGGAGACAAAAATAAGCATAAATCCAAAAAAGAAGTTATGGAGGAGATAATTGCTAAAAGCAAACTGTACAAGATTCAAAAAGCCAAAGAGAAGGATGATGATGAAAATCTCAAGGAGAAGTTGGATAAAGAGTTTACATCGTTGGTTCAATCTGAGGGCTTGCTTTCTCTAATGCGGCCTAAAAAAGAGAGTCTGAAAGCTTTATTGGGCAAGGGGAGTTCAAAAGGGATTGAATTTGATACTAATTCTTCTATTCTGGAGAAAGCAGTATTTGCAAAGGAGCAATCTGATGACTATGACAAACTTGTCAAGGAGATGGTTCTAGACATGCGCGGACATGCCTCTGACAGGACGAAAACTCCTGAAGAGATTGCTAAAGAGGACAGAGCTCGCCTGGAAGCCTTAGAGGAAAAGCGTAAGAAAAGAATGCTTGACAACGAAGTTTCAGATGATGATGAAGGCAATGTGGATGATTTCAACGGAAGAACAGAAAAAAAGATGAAATTTATTTCTGGTGATGATCTCGGTGATTCATTCTTTTCAGACGAAGAAGAAGAAAAGAAAGGCTGGGTGGATGAGGTGCTTGAAAGAAGAGAGGAGGAGAGTGAGGATGGAGAATATGATGATGGTAGTTCTGCATCAGAGGAAACCGAGGAGGATGAAAATGACAGTGACATAGGAGAAAGATTGATAGAGCAAGACTGGGAGCAAAGCGATGATGAGTATAACATTGATAATAAACAACAAAGAGAGATGCTAGATGAATCAGGTGAAGGGGCATTGAAGAAAAGGCTAAAAGATAAAAAGGAAATAGAATTCAGAAATCAGAAGTCAGACAAAGCGAAAGAAAAGAATGCAACTATTCAAATGACAGTTGCAGCTGAGAAAATTGAAACTCTGCCCTATGTTATCAATGCTCCAAGCAATTTGAGAGAGTTAAGGTCTTTGCTTGATAATCGGTTGGATGATCAGATAGTTGAAGCAATTGGTCGTATTCGAGCATGCAATGCTATTAGCTTGGCTGCAGAGAATCGTCATAAAATGCAAGTATTCTATGGTGTTTTGGTGCAGTATTTTGCTGTTCTTGGAGATGAAAAGCCACTAAGATTAAATAAACTCAACTTATTTGTGAGGCCCCTTATAGAGATCAGCTTTGAAATACCATATTTTGCAGCCATTTGTGCACGGAAACATCTAATACGCATTCGGAACCAGTTGTGTGTGGATCTTAAGAACCCAGACAAGAGCAGCAGCTGGCCATCTGTGAAGACACTGTTGCTACTGCGACTTTGGTCACTGATATTTCCTTCTTCTGATTTCCGGCATGTTGTTATGACGCCTGCTGTTCTACTTATGTCAGAGTATCTTATGCGTTGCCCCATCAATTCAGGACGGGATGTTGCTATTGGAACATTCTTATGCTCCATGCTTCTCTCAGTTCACAAAGGTGCTCGAAGGTTTTGTCCCGAGGCTGTCAATTTTTTGCAGGCTCTGTTGATGTCAGCTTTAGATACTAACCAGAGCCTCAATAAGAGGGATGAAGTGAAATGCCCTACCTTTTTGCTGGAGCATGAAGAGTATAGGCCTTGGCTGCATCTTTCAAGTGGGGTATCCGTTTTACCTCAACCTTTGGATTTCATTATGATCATGGAGACTAGTGATGACGTGCCTCTCTTTGACTCAAACTTATACAGGGTTGGCATACTTCTTTCTGTATCAGAAACGTTGAGAGGTTTTGTAAACATATATCATGACATTGTTTCGTTCCCTGAAGTATTTGCATCCTTTGTACCTCTATTGAATGAAATAGTCAAAGAAAATAAGATACCCGAGACTCTCCGATTGAAGATGACAAGCATTGCTTCTCTAATAAAGGGGAAAATTGATGAGCATGAAAAGCTACGGCAACCATTGAGGATGAGAATGAAGAAGCCCATGCCTATCAAGCAATTCAATCCAAGATTTGAAGAGAACTTTGTGCATGGGAAAGATTATGATCCTGACAGAGAAAGGGCACAGAGAAAGAAGTTGGAGCGCCAGATCAAGCAGGAGGCAAAGGGTGCTGCTCGTGAACTGCGCAAGGATAACTACTTTTTGCAGGAAGTGAAGGCAAGAGAAAGGGCTGTGGCAGAGGAGGAGAGAGCAGACAGGTATAAGAAAGCAATGGCTTTCTTACAGGAACAAGAATCTAATTTCAAATCTGGGCAATTAGGAAGAGGAAGAAAGAAAAGAAATTAGGGACAATGACATGGTCTTTACCAATGTCGCCAATAATCTGACAGGCCATTTAGCTTTGGAAGGGAGTTTTAGTTGAGGTTACATTGGCATGGAATCTCATAGAGGTTTTTGTAAAGCAGTCAATTGAGGGAGTTAAATTTGACTGTGTAAATGATCAGAGTAGTTGAACTGATGACAATTCCTCTCATTAGAGTGGTTAAAGTTACATCAAGCAATTTGCTTTTCCTCTTTGTTTAAGGTGATGGTTGGCAAATTTTTCATTGCAATGCCACCATGGAAATTTGTTATTGATTGTTCTGGTATTTGTAAAACATTTTTCAATTGGTAGTGATATCAATTATTTGTGAACTGGATCTGTATTAACATGGAGACCCAGGTTCAAAACCCCCTGCGAAATGTGAATGAGGTTCGGTATAAGTCCAAGGTGATTTGACAGCATAGAAACATACTGAAGCATGGCAGCTTAGCTGAAGGACAACTGCAAGTTACTAAAGTGACATTTGACAAAAAAGTACCTCGTGCATATCTAGATAACAGCATAAATGTAAAATATAATTTTACCTTTTTAAGTGCTACCTGGTTTCAACATAATGTAAAACATGGATATAATGCAAGATTGGTTTAC

Ace file of the UniGene sp_v3.0_unigene157

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nop14 multi-domain protein	-	-	0.0	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%

Source	Gene names
Sma3	BoB029L16.30; GSVIVT00029998001; LOC_Os03g40110; OJ1523_A02.5; OSJNBa0087M10.7; Os03g0598200; OsI_12505; OsJ_11647; PHYPADRAFT_181805; POPTRDRAFT_566774; POPTRDRAFT_659038; RCOM_0853170; VITISV_013457; VITISV_013458;

Source	GOs	Term	Type	e value	Identity
Sma3	response to stress	GO:0006950	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Nop14-like protein	IPR007276	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002316014.1	predicted protein [Populus trichocarpa]	0.0	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMA3

Fln msg: your sequence is longer than subject: 891 - 198

Fln protein: MWTRKKFDLLGKKQKSQGQRVGLARSRAIEKRKKTLLQEYKQSGKANVFLDRRFGENDDTLEDADKAIIRFQRERQSRMLKKDKYTLADGEDDILTHHGAALSTLDDFEDEIVEDDDDVDDTITRKLNFGGGADQDTIPNAAVLQGDKNKHKSKKEVMEEIIAKSKLYKIQKAKEKDDDENLKEKLDKEFTSLVQSEGLLSLMRPKKESLKALLGKGSSKGIEFDTNSSILEKAVFAKEQSDDYDKLVKEMVLDMRGHASDRTKTPEEIAKEDRARLEALEEKRKKRMLDNEVSDDDEGNVDDFNGRTEKKMKFISGDDLGDSFFSDEEEEKKGWVDEVLERREEESEDGEYDDGSSASEETEEDENDSDIGERLIEQDWEQSDDEYNIDNKQQREMLDESGEGALKKRLKDKKEIEFRNQKSDKAKEKNATIQMTVAAEKIETLPYVINAPSNLRELRSLLDNRLDDQIVEAIGRIRACNAISLAAENRHKMQVFYGVLVQYFAVLGDEKPLRLNKLNLFVRPLIEISFEIPYFAAICARKHLIRIRNQLCVDLKNPDKSSSWPSVKTLLLLRLWSLIFPSSDFRHVVMTPAVLLMSEYLMRCPINSGRDVAIGTFLCSMLLSVHKGARRFCPEAVNFLQALLMSALDTNQSLNKRDEVKCPTFLLEHEEYRPWLHLSSGVSVLPQPLDFIMIMETSDDVPLFDSNLYRVGILLSVSETLRGFVNIYHDIVSFPEVFASFVPLLNEIVKENKIPETLRLKMTSIASLIKGKIDEHEKLRQPLRMRMKKPMPIKQFNPRFEENFVHGKDYDPDRERAQRKKLERQIKQEAKGAARELRKDNYFLQEVKARERAVAEEERADRYKKAMAFLQEQESNFKSGQLGRGRKKRN*

Protein Length: 892

Fln nts: ATGGATCGAAGAAGAAGAAGAAGATTCGAACCCTGGCCCCGGAAGCAGAAACATTGAAGGCAAAGGCTACTGGTTCAGGCCAGAACCTGTTCGAGACC_-_ATGTGGACGCGGAAAAAATTCGACCTCTTGGGCAAAAAACAGAAAAGCCAAGGGCAACGCGTGGGCTTGGCCCGTTCAAGAGCCATAGAAAAGAGGAAGAAGACTCTCTTACAAGAATACAAACAAAGTGGAAAAGCTAATGTTTTCTTGGACAGGCGGTTTGGGGAAAATGATGACACTCTTGAAGATGCAGATAAGGCTATTATTAGATTCCAGCGTGAGCGACAGTCACGGATGCTTAAGAAGGACAAATACACTTTAGCAGATGGAGAAGATGACATTCTTACTCATCATGGTGCTGCTCTATCGACTCTGGATGACTTTGAGGATGAGATTGTTGAAGATGATGATGATGTAGATGACACGATTACCAGGAAGCTGAATTTTGGTGGGGGTGCTGATCAAGACACAATCCCAAATGCTGCTGTTTTACAAGGAGACAAAAATAAGCATAAATCCAAAAAAGAAGTTATGGAGGAGATAATTGCTAAAAGCAAACTGTACAAGATTCAAAAAGCCAAAGAGAAGGATGATGATGAAAATCTCAAGGAGAAGTTGGATAAAGAGTTTACATCGTTGGTTCAATCTGAGGGCTTGCTTTCTCTAATGCGGCCTAAAAAAGAGAGTCTGAAAGCTTTATTGGGCAAGGGGAGTTCAAAAGGGATTGAATTTGATACTAATTCTTCTATTCTGGAGAAAGCAGTATTTGCAAAGGAGCAATCTGATGACTATGACAAACTTGTCAAGGAGATGGTTCTAGACATGCGCGGACATGCCTCTGACAGGACGAAAACTCCTGAAGAGATTGCTAAAGAGGACAGAGCTCGCCTGGAAGCCTTAGAGGAAAAGCGTAAGAAAAGAATGCTTGACAACGAAGTTTCAGATGATGATGAAGGCAATGTGGATGATTTCAACGGAAGAACAGAAAAAAAGATGAAATTTATTTCTGGTGATGATCTCGGTGATTCATTCTTTTCAGACGAAGAAGAAGAAAAGAAAGGCTGGGTGGATGAGGTGCTTGAAAGAAGAGAGGAGGAGAGTGAGGATGGAGAATATGATGATGGTAGTTCTGCATCAGAGGAAACCGAGGAGGATGAAAATGACAGTGACATAGGAGAAAGATTGATAGAGCAAGACTGGGAGCAAAGCGATGATGAGTATAACATTGATAATAAACAACAAAGAGAGATGCTAGATGAATCAGGTGAAGGGGCATTGAAGAAAAGGCTAAAAGATAAAAAGGAAATAGAATTCAGAAATCAGAAGTCAGACAAAGCGAAAGAAAAGAATGCAACTATTCAAATGACAGTTGCAGCTGAGAAAATTGAAACTCTGCCCTATGTTATCAATGCTCCAAGCAATTTGAGAGAGTTAAGGTCTTTGCTTGATAATCGGTTGGATGATCAGATAGTTGAAGCAATTGGTCGTATTCGAGCATGCAATGCTATTAGCTTGGCTGCAGAGAATCGTCATAAAATGCAAGTATTCTATGGTGTTTTGGTGCAGTATTTTGCTGTTCTTGGAGATGAAAAGCCACTAAGATTAAATAAACTCAACTTATTTGTGAGGCCCCTTATAGAGATCAGCTTTGAAATACCATATTTTGCAGCCATTTGTGCACGGAAACATCTAATACGCATTCGGAACCAGTTGTGTGTGGATCTTAAGAACCCAGACAAGAGCAGCAGCTGGCCATCTGTGAAGACACTGTTGCTACTGCGACTTTGGTCACTGATATTTCCTTCTTCTGATTTCCGGCATGTTGTTATGACGCCTGCTGTTCTACTTATGTCAGAGTATCTTATGCGTTGCCCCATCAATTCAGGACGGGATGTTGCTATTGGAACATTCTTATGCTCCATGCTTCTCTCAGTTCACAAAGGTGCTCGAAGGTTTTGTCCCGAGGCTGTCAATTTTTTGCAGGCTCTGTTGATGTCAGCTTTAGATACTAACCAGAGCCTCAATAAGAGGGATGAAGTGAAATGCCCTACCTTTTTGCTGGAGCATGAAGAGTATAGGCCTTGGCTGCATCTTTCAAGTGGGGTATCCGTTTTACCTCAACCTTTGGATTTCATTATGATCATGGAGACTAGTGATGACGTGCCTCTCTTTGACTCAAACTTATACAGGGTTGGCATACTTCTTTCTGTATCAGAAACGTTGAGAGGTTTTGTAAACATATATCATGACATTGTTTCGTTCCCTGAAGTATTTGCATCCTTTGTACCTCTATTGAATGAAATAGTCAAAGAAAATAAGATACCCGAGACTCTCCGATTGAAGATGACAAGCATTGCTTCTCTAATAAAGGGGAAAATTGATGAGCATGAAAAGCTACGGCAACCATTGAGGATGAGAATGAAGAAGCCCATGCCTATCAAGCAATTCAATCCAAGATTTGAAGAGAACTTTGTGCATGGGAAAGATTATGATCCTGACAGAGAAAGGGCACAGAGAAAGAAGTTGGAGCGCCAGATCAAGCAGGAGGCAAAGGGTGCTGCTCGTGAACTGCGCAAGGATAACTACTTTTTGCAGGAAGTGAAGGCAAGAGAAAGGGCTGTGGCAGAGGAGGAGAGAGCAGACAGGTATAAGAAAGCAATGGCTTTCTTACAGGAACAAGAATCTAATTTCAAATCTGGGCAATTAGGAAGAGGAAGAAAGAAAAGAAATTAG___GGACAATGACATGGTCTTTACCAATGTCGCCAATAATCTGACAGGCCATTTAGCTTTGGAAGGGAGTTTTAGTTGAGGTTACATTGGCATGGAATCTCATAGAGGTTTTTGTAAAGCAGTCAATTGAGGGAGTTAAATTTGACTGTGTAAATGATCAGAGTAGTTGAACTGATGACAATTCCTCTCATTAGAGTGGTTAAAGTTACATCAAGCAATTTGCTTTTCCTCTTTGTTTAAGGTGATGGTTGGCAAATTTTTCATTGCAATGCCACCATGGAAATTTGTTATTGATTGTTCTGGTATTTGTAAAACATTTTTCAATTGGTAGTGATATCAATTATTTGTGAACTGGATCTGTATTAACATGGAGACCCAGGTTCAAAACCCCCTGCGAAATGTGAATGAGGTTCGGTATAAGTCCAAGGTGATTTGACAGCATAGAAACATACTGAAGCATGGCAGCTTAGCTGAAGGACAACTGCAAGTTACTAAAGTGACATTTGACAAAAAAGTACCTCGTGCATATCTAGATAACAGCATAAATGTAAAATATAATTTTACCTTTTTAAGTGCTACCTGGTTTCAACATAATGTAAAACATGGATATAATGCAAGATTGGTTTAC

Fln Alignment:

Contig157___MIMETSDDVPLFDSNLYRVGILLSVSETLRGFVNIYHDIVSFPEVFASFVPLLNEIVKENKIPETLRLKMTSIASLIKGKIDEHEKLRQPLRMRMKKPMPIKQFNPRFEENFVHGKDYDPDRERAQRKKLERQIKQEAKGAARELRKDNYFLQEVKXXXXXXXXXXXXXXYKKAMAFLQEQESNFKSGQL
B8LMA3_____________MIMEASDDAPAFDSNIYRVGILLSVSETLRGFVNIYHDIISFPEVFTSFVPLLHEIVKENKIPESLQLKMTSIASLIKGKIDEHEKLRQPLRMRMKKPVPIKQFNPRFEENFVHGKNYDPDRERAQRKKLERQIKQEAKGAARELRKDNYFLQEVKARERAVAEEERADKYRKAMAFLQEQESNFKSGQL

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
203	40			60	1.0
257			40	60	1.0
724		57	42		1.0
1114	16			83	0.994512
1115		16	83		0.994512
1116	16	83			0.994512
2157		20		80	0.995493
2228			80	20	0.995493
2231			20	80	0.995493
2358			80	20	0.995493
2359	80		20		0.995493
2388	60		40		1.0
2415	83			16	0.994512
2416	83		16		0.994512
2417			16	83	0.994512
2418			16	83	0.994512
2644			88	11	0.923564
2685	11		88		0.923564
2686		11		88	0.923564
2689	88			11	0.923564
2928	11	88			0.923564
2970		10		90	0.90298
2971	90		10		0.90298
2972	90			10	0.90298
2973	90	10			0.90298
2976			10	90	0.90298
2988		10		90	0.90298
2989	11			88	0.923564
2990		11		88	0.923564
2991			88	11	0.923564
2994	11			88	0.923564
2995			11	88	0.923564
2997		11		88	0.923564
2998	11	88			0.923564
3002	11			88	0.923564
3012			77	22	0.999999
3013		11		88	0.923564
3022	12		87		0.992554
3031	12			87	0.992554
3068		14		85	0.993533
3152		11		88	0.923564
3184	44		55		1.0
3285	14		85		0.993533
3287	85		14		0.993533
3288		85		14	0.993533

SSRs (tot: 3)

Start position	End position	Sequence	Length
8	24	GAA GAA GAA GAA GAA GA	17
441	453	GAT GAT GAT GAT G	13
1080	1091	GAA GAA GAA GAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain