SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene147

Length: 2292 nt

UniGene Fasta

>sp_v3.0_unigene147
AGAAAGGCCTCTATGACAAATATATTTTACTTCTTGACTTCAACAGTCTTTACCCTTCCATCATACAGGAGTATAATGTTTGCTTTACAACTGTTGAGCGCCCTTCGGATGGCTCTATACCTAATTTACCAACCTGCAACATATCTGGAGTTCTTCCACAGTTATTGAAAAATTTAATGGGAAGAAGGAAACAAGTTAAGCTATGGCTAAAAAACACATCAGATCCTCTAAAATATCAACAGCTAGATATTCAACAGCAAGCATTGAAGCTCACTGCTAACAGCATGTATGGCTGCTTGGGATTCACAAACTCAAGATTTTATGCAAAGCCGCTGGCAGAGCTCATCACCTCACAGGGCCGGGAGATCTTGCAAAGTACCGTTGACCTTGTACAAAACCATCTTAATCTTGAGGTCATTTATGGAGATACAGATTCGATCATGATCCATACTGGTATGGATGATGTAACAGATTCCAAGATGGTAGCAGTGAAGGTCATAAAAGAGGTTAACAAGAAGTATAAATGCTTGGAAATAGATCTAGATGGGATATATAAGCGCATGCTTCTGCTCAAGAAAAGAAATATGCAGCAGTTAAAGTGCAATTTAACAAGGATGGTACCATCTACGAGGTCATTGAACAAAAAGGGCTTGATATAGTTCGTCGTGACTGGAGCTTATTGTCAAAAGAAATAGGCAACTTTTGTTTGGAACAGATTTTGTCAGGAGGGTCATGTGAAGATGTTGTGGAAGCTATTCACAGCAAGCTGCAGAAGGTGCAAGAGGAAATGAGAAATGGTCAAGTGGAGCTTGAGAAATACGTCATTACGAAATCATTGACTAAACCTCCAGAGGAGTATCCGGATTCCAGAAACCAGCCACATGTCCAGGTGGCATTAAGAATGAAGCAGAGTGGCCATCATATTGGTTGTTCTGTTGGTGATACAGTTCCTTACATAATTTGTTTTGAGCAGGGATCTGGATTGGGATCAACAACAGGCATTGCCGAAAGGGCAAGACATCCAGATGAGTTGAAAAGGGACAGTGGAAACTGGATGATTGACATTGATTATTATCTATCTCAGCAGATTCATCCTGTTGTGTCTAGATTATGTGCACCTATCCAAGGTACAAGCCCAGGACGTCTTGCAGATTGTCTTGGATTGGACTCATCGAAGTTTGAACCAAAAATGAGTTTTGAAGCTGTTGCGAAAGAGCCAGCTACTGCATTTCTCTCCAGTCTTCATGATGATGATGATGAAAGATACCATGACTGCGAACCATTCTTGATAGTATGCCCACATTGTTCCTCAAGTTTTGAATGTCCTAGTGTCGCAAGCATAATTAAAAGTTCTGAAAATCTTACAACCAACTCCGGAGAAAATGAACAAGATGAAACATTATCCAAGACATCAAGGGAGGCAACTGAGAAATATTGGTGCTCACTCCATTGTCCAAAATGTCAAGATGAGGGTGTACCAAGTGTAATTTCTCCTGCCATACTAGCTAATCAGGTGAAAAGGCAGGCAGAAAAATTCATCGCATTGTACTATACAGGGTTAATGATTTGTGATGAAGAAATGTGCAAGCACACAACTAGAAACTTGAACTTGCGGGTTATCGGTGATATGGAAAGGGGAACAGTTTGTCCAAATTATCCTCGCTGCAATGGACATCTTGTCCAACAGTACACCGAGGTAGACCTGTACAAGCAGCTTACATACTTCTGCCACATACTTGACATTCAGCGCGTGATTCAAAAGTTTGAGTATAATGCAAGAATGCCAGCAGAGAAACGCCTTGCCAAAATACGACCTGCAATTGATGCTGCAGCTATGACTATTCGCAAAATAAGAGATCGTTGCGCATATGGATGGGTGCAACTTAATGATATTGTAGTCAGCGTCTAACTTCTTTCAAATCCATTTACATGCAGCACTTCATGTTTTATATCTTTTGTACTTGCAAGGGCATTGCACATGTTTTTTATCATTAGTTCATGTGCACATAGGGTTTCCCCACATCCGGTATATAGCTGATATGAACAGCAGTTAGATCTTTGGAGGTACCCCTCCATGCTGATGAGTGGATTTTTTACATTATGCCCTTGGAGTGAGTATTGAGCAGATTGGTTATCGTCGCTGAAGCACCAATTCTAAAATTCTGCAAGTGGCTGTCTTGTATTATAGTGATTTGTAACTATTTCAGCACATGTACACAAGTTAATGTCATTGAAATTTCTACCATATGCCAAGTGCAAGTTTTGTATGACAAAGGTGGTTTGGGGTTTGGT

Ace file of the UniGene sp_v3.0_unigene147

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase n=2 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MMP0_ARALL	-	-	0.0	55%
FL-Next	sp=DNA polymerase alpha catalytic subunit; Oryza sativa subsp. japonica (Rice).	-	-	0.0	72%
Sma3	DNA polymerase	-	-	3.052e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-directed DNA polymerase.	EC:2.7.7.7	-	2.724e-19	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	2.724e-19	%
Sma3	Pyrimidine metabolism	00240	2.724e-19	%
Sma3	Metabolic pathways	01100	2.724e-19	%

Source	Gene names
Sma3	At5g67100; GSVIVT00019509001; K21H1.14; LOC_Os01g64820; OSTLU_297; Os01g0868300; OsI_04575; OsJ_04212; P0677H08.20; PHATRDRAFT_bd1073; PHYPADRAFT_60547; POLA; POPTRDRAFT_1083164; RCOM_1409950;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleoside binding	GO:0001882	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	DNA primase activity	GO:0003896	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-
Sma3	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	-
Sma3	lagging strand elongation	GO:0006273	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed DNA polymerase, family B, pol2	IPR004578	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	Zinc finger, DNA-directed DNA polymerase, family B, alpha	IPR015088	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-
Sma3		IPR017966	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G67100.1	ICU2 DNA-directed DNA polymerases chr5:26776994-26785104 FORWARD LENGTH=1524	59%
RefSeq	Arabidopsis thaliana	NP_201511.2	DNA polymerase alpha catalytic subunit [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002310719.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O48653

Fln msg: Overlapping hits, possible frame ERROR between 653 and 572, your sequence is shorter than subject: 636 - 1534

Fln protein: KGLYDKYILLLDFNSLYPSIIQEYNVCFTTVERPSDGSIPNLPTCNISGVLPQLLKNLMGRRKQVKLWLKNTSDPLKYQQLDIQQQALKLTANSMYGCLGFTNSRFYAKPLAELITSQGREILQSTVDLVQNHLNLEVIYGDTDSIMIHTGMDDVTDSKMVAVKVIKEVNKKYKCLEIDLDGIYKRMLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIVRRDWSLLSKEIGNFCLEQILSGGSCEDVVEAIHSKLQKVQEEMRNGQVELEKYVITKSLTKPPEEYPDSRNQPHVQVALRMKQSGHHIGCSVGDTVPYIICFEQGSGLGSTTGIAERARHPDELKRDSGNWMIDIDYYLSQQIHPVVSRLCAPIQGTSPGRLADCLGLDSSKFEPKMSFEAVAKEPATAFLSSLHDDDDERYHDCEPFLIVCPHCSSSFECPSVASIIKSSENLTTNSGENEQDETLSKTSREATEKYWCSLHCPKCQDEGVPSVISPAILANQVKRQAEKFIALYYTGLMICDEEMCKHTTRNLNLRVIGDMERGTVCPNYPRCNGHLVQQYTEVDLYKQLTYFCHILDIQRVIQKFEYNARMPAEKRLAKIRPAIDAAAMTIRKIRDRCAYGWVQLNDIVVSV*

Protein Length: 637

Fln nts: AGAAAGGCCTCTATGACAAATATATTTTACTTCTTGACTTCAACAGTCTTTACCCTTCCATCATACAGGAGTATAATGTTTGCTTTACAACTGTTGAGCGCCCTTCGGATGGCTCTATACCTAATTTACCAACCTGCAACATATCTGGAGTTCTTCCACAGTTATTGAAAAATTTAATGGGAAGAAGGAAACAAGTTAAGCTATGGCTAAAAAACACATCAGATCCTCTAAAATATCAACAGCTAGATATTCAACAGCAAGCATTGAAGCTCACTGCTAACAGCATGTATGGCTGCTTGGGATTCACAAACTCAAGATTTTATGCAAAGCCGCTGGCAGAGCTCATCACCTCACAGGGCCGGGAGATCTTGCAAAGTACCGTTGACCTTGTACAAAACCATCTTAATCTTGAGGTCATTTATGGAGATACAGATTCGATCATGATCCATACTGGTATGGATGATGTAACAGATTCCAAGATGGTAGCAGTGAAGGTCATAAAAGAGGTTAACAAGAAGTATAAATGCTTGGAAATAGATCTAGATGGGATATATAAGCGCATGCTTCTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATAGTTCGTCGTGACTGGAGCTTATTGTCAAAAGAAATAGGCAACTTTTGTTTGGAACAGATTTTGTCAGGAGGGTCATGTGAAGATGTTGTGGAAGCTATTCACAGCAAGCTGCAGAAGGTGCAAGAGGAAATGAGAAATGGTCAAGTGGAGCTTGAGAAATACGTCATTACGAAATCATTGACTAAACCTCCAGAGGAGTATCCGGATTCCAGAAACCAGCCACATGTCCAGGTGGCATTAAGAATGAAGCAGAGTGGCCATCATATTGGTTGTTCTGTTGGTGATACAGTTCCTTACATAATTTGTTTTGAGCAGGGATCTGGATTGGGATCAACAACAGGCATTGCCGAAAGGGCAAGACATCCAGATGAGTTGAAAAGGGACAGTGGAAACTGGATGATTGACATTGATTATTATCTATCTCAGCAGATTCATCCTGTTGTGTCTAGATTATGTGCACCTATCCAAGGTACAAGCCCAGGACGTCTTGCAGATTGTCTTGGATTGGACTCATCGAAGTTTGAACCAAAAATGAGTTTTGAAGCTGTTGCGAAAGAGCCAGCTACTGCATTTCTCTCCAGTCTTCATGATGATGATGATGAAAGATACCATGACTGCGAACCATTCTTGATAGTATGCCCACATTGTTCCTCAAGTTTTGAATGTCCTAGTGTCGCAAGCATAATTAAAAGTTCTGAAAATCTTACAACCAACTCCGGAGAAAATGAACAAGATGAAACATTATCCAAGACATCAAGGGAGGCAACTGAGAAATATTGGTGCTCACTCCATTGTCCAAAATGTCAAGATGAGGGTGTACCAAGTGTAATTTCTCCTGCCATACTAGCTAATCAGGTGAAAAGGCAGGCAGAAAAATTCATCGCATTGTACTATACAGGGTTAATGATTTGTGATGAAGAAATGTGCAAGCACACAACTAGAAACTTGAACTTGCGGGTTATCGGTGATATGGAAAGGGGAACAGTTTGTCCAAATTATCCTCGCTGCAATGGACATCTTGTCCAACAGTACACCGAGGTAGACCTGTACAAGCAGCTTACATACTTCTGCCACATACTTGACATTCAGCGCGTGATTCAAAAGTTTGAGTATAATGCAAGAATGCCAGCAGAGAAACGCCTTGCCAAAATACGACCTGCAATTGATGCTGCAGCTATGACTATTCGCAAAATAAGAGATCGTTGCGCATATGGATGGGTGCAACTTAATGATATTGTAGTCAGCGTCTAACTTCTTTCAAATCCATTTACATGCAGCACTTCATGTTTTATATCTTTTGTACTTGCAAGGGCATTGCACATGTTTTTTATCATTAGTTCATGTGCACATAGGGTTTCCCCACATCCGGTATATAGCTGATATGAACAGCAGTTAGATCTTTGGAGGTACCCCTCCATGCTGATGAGTGGATTTTTTACATTATGCCCTTGGAGTGAGTATTGAGCAGATTGGTTATCGTCGCTGAAGCACCAATTCTAAAATTCTGCAAGTGGCTGTCTTGTATTATAGTGATTTGTAACTATTTCAGCACATGTACACAAGTTAATGTCATTGAAATTTCTACCATATGCCAAGTGCAAGTTTTGTATGACAAAGGTGGTTTGGGGTTTGGT

Fln Alignment:

Contig147___KGLYDKYILLLDFNSLYPSIIQEYNVCFTTVERPSDGSIPNLPTCNISGVLPQLLKNLMGRRKQVKLWLKNTSDPLKYQQLDIQQQALKLTANSMYGCLGFTNSRFYAKPLAELITSQGREILQSTVDLVQNHLNLEVIYGDTDSIMIHTGMDDVTDSKMVAVKVIKEVNKKYKCLEIDLDGIYKRMLLLKKxxxxxxxxxxxxxxxxxxxxxxxxxGLDIVRRDWSLLSKEIGNFCLEQILSGGSCEDVVEAIHSKLQKVQEEMRNGQVELEKYVITKSLTKPPEEYPDSRNQPHVQVALRMKQSGHHIGCSVGDTVPYIICFEQGSGLGSTTGIAERARHPDELKRDSGNWMIDIDYYLSQQIHPVVSRLCAPIQGTSPGRLADCLGLDSSKFEPKMSFEAVAKEPATAFLSSLHDDDDERYHDCEPFLIVCPHCSSSFECPSVAS-IIKSSENLTTNSGENEQDETLSKTSREATEKYWCSLHCPKCQDEGVPSVISPAILANQVKRQAEKFIALYYTGLMICDEEMCKHTTRNLNLRVIGDMERGTVCPNYPRCNGHLVQQYTEVDLYKQLTYFCHILDIQRVIQKFEYNARMPAEKRLAKIRPAIDAAAMTIRKIRDRCAYGWVQLNDIVVSV
O48653_____________KGLYDKYVLLLDFNSLYPSIIQEYNICFTTVDRSADGNVPNLPASKTTGVLPELLKSLVERRRMVKSWLK-TASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIAGKVIQEVNKKYRCLEIDLDGIYKRMLLLKKxxxxxxxxxxxxxxxxxxxxxxxxxGLDMVRRDWSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSLTKAPEDYPDAKNQPHVQVALRLKQNGYS-GCSAGDTVPYIICSQQDSESTHSGGIAQRARHPEELKRNPDKWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSSKFQSRLTESD--NQDTSSMLLSVIDDEDERYRGCEPLRLSCPSCSTTFDCPPVSSLIIGSSSGNVSNPNEGN----------DASINFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLYYKGLLMCDDEGCKYSTHSVNLRVMGDSERGTICPNYPRCNGHLVRQYTEADLYRQLSYFCYVVDATRCLEKLDQKARLPFEKEFAALSQTINLALMEVQKIRDRCAFGWVQLKDLAISI

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
623	20	80			0.995493
626		80	20		0.995493
641	80	20			0.995493
643	25	25			0.995533
644	80	20			0.995493
692	80		20		0.995493
1151	12	87			0.992554
1212	11		88		0.923564
1261	11		88		0.923564
1262	88	11			0.923564
1264	88			11	0.923564
1265			88	11	0.923564
1305		20		80	0.995493
1306	20			80	0.995493
1307			80	20	0.995493
1451	66		33		0.997452
1876		11		88	0.923564
1877	11		88		0.923564
1878			88	11	0.923564
1879			88	11	0.923564
1882		87		12	0.992554
1883	85		14		0.993533
1884	85		14		0.993533
1885		85	14		0.993533
2060	25			75	0.996473
2250		16		83	0.994512
2251	16		83		0.994512
2252		83		16	0.994512
2253		83		16	0.994512
2272		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1245	1260	ATG ATG ATG ATG ATG A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain