SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene143

Length: 1912 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene143 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RZ39_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	78%
Sma3	NAC domain protein, IPR003441	-	-	-

Source	Gene names
Sma3	ANAC; ANAC094; ATAF; ATAF1; At1g01720; At1g26870; At1g52880; At1g52890; At1g61110; At1g61110/F11P17_16; At1g69490; At1g77450; At1g77450/T5M16_4; At1g79580; At2g33480; At3g04070; At3g15500; At3g15510; At4g27410; At5g08790; At5g08790/T2K12_140; At5g08980; A

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of cell size	GO:0008361	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to light stimulus	GO:0009416	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-
Sma3	multidimensional cell growth	GO:0009825	Biological Process	-
Sma3	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	leaf senescence	GO:0010150	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	positive regulation of asymmetric cell division	GO:0045770	Biological Process	-
Sma3	somatic stem cell division	GO:0048103	Biological Process	-
Sma3	root cap development	GO:0048829	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G61110.1	anac025, NAC025 NAC domain containing protein 25 chr1:22516730-22518055 FORWARD LENGTH=323	77%
RefSeq	Arabidopsis thaliana	NP_564771.1	NAC domain containing protein 25 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002305677.1	NAC domain protein, IPR003441 [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A5C5Q0

Fln msg: your sequence is longer than subject: 285 - 226

Fln protein: MELPPGFRFHPTDEELVVHYLKKKAMSSPLPVSIIAELDLYKFDPWDLPGMTTYGEHEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPILTSSGRQKIGVKKALVFYRGRPPKGIKTDWIMHEYRLADGISKPSSLASRKGSLRLDDWVLCRIYKKSRHSPRMEESEKDESHIEEGSSSLLDIHHDQHLQLPKCGPFSSLLASAVDVLDESLIDVESPQETGYQRNPLFPSNSRNDNISNNNNGDNGPANFNTLHPQAIHEEKLLGTMGDFRQIYQSRFP*

Protein Length: 286

Fln nts: TGATAATTAAGGTTGCGCCTCGGAGTAGGACTCTTTGGCAAAGCAGGTGACCTGCTGACAAAGTATAACCGTCGCCCAATACACTTAAATTCGGATGTTTTGAGCGCCTTCTAGGTTCTTTCTGGGTACGCTCTAGGGTGGGATTTTGTGATTGGTGTC_-_ATGGAATTGCCTCCGGGATTCAGATTTCATCCTACGGACGAGGAGCTGGTGGTTCATTACTTGAAGAAGAAGGCTATGTCTAGTCCGCTTCCTGTGTCGATTATTGCAGAACTTGATCTGTACAAGTTTGATCCGTGGGATTTGCCTGGAATGACAACATATGGGGAGCATGAGTGGTATTTTTTCAGTCCAAGAGATCGCAAGTACCCTAATGGTGCTCGGCCAAATAGAGCTGCAGCTTCTGGATATTGGAAAGCTACTGGGACTGACAAGCCAATTCTGACATCTTCTGGTAGACAAAAGATTGGAGTAAAGAAAGCTCTGGTTTTTTATAGAGGCAGGCCACCCAAGGGCATCAAAACAGACTGGATTATGCATGAATATCGTCTTGCTGATGGAATATCAAAGCCAAGCAGTTTGGCTAGCAGGAAGGGATCCTTGCGTCTCGATGATTGGGTGCTGTGTCGTATTTACAAAAAAAGCAGACACTCTCCAAGGATGGAAGAAAGTGAGAAAGATGAATCACACATTGAAGAAGGTTCATCGTCCTTGCTCGACATTCATCATGATCAGCATCTGCAGCTTCCAAAATGTGGTCCTTTTAGCAGCCTGCTGGCTTCGGCTGTGGATGTATTGGATGAAAGCTTGATTGATGTTGAATCACCTCAAGAGACAGGATACCAGAGGAATCCCCTCTTCCCTTCCAATAGCAGAAATGATAATATCAGTAACAATAATAACGGTGATAATGGTCCAGCCAACTTTAACACATTGCATCCTCAAGCCATCCATGAAGAGAAATTACTTGGGACAATGGGAGATTTTCGACAAATTTATCAATCTCGTTTTCCATAA___AAATATCTAGAGCTATTCACATCCTGCCCTTCTCAGTTCTGGTTCTCAGAAGTGTGAGAAAACCGCATTCATCACTTGAACTGGTACACTGTGCTTCTATCTTTTCTGTTATACTAGTAACTCCTATTGTTTCACCATGCTGACAGAACTCATCATTTTTTGTGCAAATTAGAGGGGGCAGCAGATGGCCTGTACTCAGGCAAAACCAACACTGCAAAATTACATGGATTTTGTATAAGATATCAGAAGACCTATACAATCTCATAGAACATGCATGTACAAAAAGTCAAGTGCACTATAAATACATGTACAAAAAGTCAAGTGCACTATAAATACAAGCCCCTCTCCAATCAGAGACAGCAGCAGCTCAGTATCAACTTTGTGGGAAAATTATTTACATATGCCAGCTCTTAGAAGTTGTATATAGTGAATCATTGTACATCTAGCCATAGGGTGAAGCAACAGATCATATGGTTGGTGGGTTAACCAGATCAGAGATTTTCTTAAATAAAAGTCCAACAGCATCCAAATATGAAATGGTTTTTGAACATGGAATAAAGACAAAAGCCAAGGCAGTTGAAACGATTTCAGATGAAATTAGTGCATTGTAAGAGAATTCTATGTACATCCTAGGAGGGAAAATGTAGATGGATTAACTCAACATATCAATTACGAAGGGGCAGACTATCTTCACACAGAAGTGTAGAGTTGCCAGGGTAATAATTTAGCTGTTTAATGTTGATTTGTGCAAACTCTTATTGGGCATTCAGTTAATATTGAATTTAGAAAGACTATTGAATTGAAGGGGATGTTGATTTACGACAGTTTGAGAATCAACTGTAATTGGTCATTTTCTCATTGGACTTAATGCAGCATTTTTATGGGGTGCAGCTTTGAG

Fln Alignment:

Contig143___ELPPGFRFHPTDEELVVHYLKKKAMSSPLPVSIIAELDLYKFDPWDLPGMTTYGEHEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPILTSSGRQKIGVKKALVFYRGRPPKGIKTDWIMHEYRLADGIS---KP--SSLASRKGSLRLDDWVLCRIYKKS
A5C5Q0_____________QLPPGFRFHPTDEELVVHYLKRKAASVPLPVTIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSNGSQKVGVKKALVFYGGKPPKGIKTNWIMHEYRLIDSTSSNTKPPGADMGNKKGSLRLDDWVLCRIYKKN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1172		66		33	0.997452
1649		62		37	1.0
1678	37		62		1.0
1770	66	33			1.0
1789	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain