SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene141

Length: 2282 nt

UniGene Fasta

>sp_v3.0_unigene141
GCGTAGAAAGCGTTGGAGGACAATTTGTAATTGGCATCTGAGCATCCACAAATTCTTATTTTAATGGGAAGGGATTCGGTGAAGTTTGTGGAATCGGGTGGGATTCCGATGTCTCATGGCAAGTTGCTGCAGCTTTCCTGGCCAAGTTGCATGAAGCCTTGAGTCAGTCTGTGTGTGTGTGGGGCATCCGTATTCAATTTGTTTTTTTTTTTTTTTTTTCAGATCGGAGGAAGCATCTGGACTAGAATATCTCTCGCAGAATTGGATTGCCTTGGAGACTAGATTTCAGAGCAAATTCACGACTTTGAGGAGCCTTGGACAGCGAACCTTATAAATTTGGTGCATTCTGATCTGTTTTGACCGCAAACTCACGGGTAAGAGCTTCCATTTCTAAAGTATTTAGGAAACTCTTATTGAGCGAAGCGGATTTCTTGTTTTTGGCACGGCGCAGGGAAATTACCTTTGAATCGAAAGTTGTGAGTGTTTTTCTTCAATAAGAAGTCTGTTTTTCTTGAATAAGAAGGCTGTGCTTAAGTTTTGTTGAAGATTTGATCCTTTTGGCTCGGTTTTGCTCCATAGACCCGGCTTTTTCTCAGTTCACCTCAAGTTTGTTTAGTTTTCCCCAAAATTTGCATTTTTCTATAAAAAATGGCATGTACCGATGACATATTCTTGCTGTCAAGCTGCTGAATATTTGCTCCTCTTCGAGTCAGCGTTATTTACTTCTGCAAAAAACGTTTGATTTAATTTGGACAAATTTGCCAAGGCGTCTCAATTTGTGCTATTGCAGCCTAGAAGAAACATAAACCGTAAAGTTTATCGCCAAATCTTGATTTTTTGACAACAATGTTGCTCCGAAGCTCCTCCACACCGGTCCTGGGATCATTGATTCCACCGTTACCACTTCCAGATAATCACAGAGATAAAGAAGGGAAAGTGAATTTCTCGTCGGAAAATGCGAACCAGTTGAATTTCCACAATGCGAGTTCGCATCTTAATTCGTTTTCGAGCTTGGACAGCTGCTCCGTCGATGAAGACAAAGAGGCCATTCCGTCTTCCAATTTCAGGCGAGTTCAGTCGGAAAGCGATCTCCGGAGCCTAAGCCGAGTTTCACCTGCCCCAGCAAAGGTCGGCCCGGAAACTCTTTTCCAGGGTAACTCATTTGATGATTTTCAGCAAGCTTCTTCCAAAAAGCCTTGGTCTCGGAGGGTATCGGCTCACAAGAGATTACCCTCTCTGAAGTCAATCCCATCTTTTGCGTGTTATTATGATGAAGAGGCAGTAGATGAACGCTTGGAACATGATAACGATAGTGGCATGGTGGAATCTCAATTACAGGAGTTTAGTTTTGAAAATGAAGCCATGGGGGAAATAGTTGGAAGAGTGAAGGATCTTTACACACCGGAAAGAGTAGAGGAGAAGATATCCGCGGCACCGTTGTTTATGGCTCGGGGACTTGGCCTCGATGTCATAGATCCTCAAACCGATATGGGAAGCAGTGGCGGAAACTCTTCTTGGAAAGGGGTTTACACTGGTGGAAGTAGTGGTGGTGACGGATTTGGAGCTGGGCCTGATAATATTGAGGAGCATTATCAGAGAATGCTCGAGAAGAATCCTGGAAATTCTCTTGTTCTTAGGAACTACGCTCAGTTTTTGTACGAGTCAAAACACTTTCATAAAGCAGAAGAGTATTACTCAAGGGCAATTTTAGCTCAACCTGATGATGGGGAATTGTTAGCACAGTATGCTAAATTGGTATGGGAACTTCACCACGATGAAGAGAGGGCCTCCGCCTATTTTGAGCAAGCTGTGCAGGCCTCTCCTGAAGATTGTAATGTTGCTGCAGCATATGCATCCTTCCTCTGGGACACAGATACAGAAGAGCAAGAGCAGGATTTTTCCAGTTTGTACAATGGTACAAATGTTTTGGGAACTCTTGGTTATGCAACAACCACAGTATCATGATGTGTGCTTGAGCTAAAATCTCAAGAAATGATGAAAGAGTCAGAGTTGAAATCTCAAGATAGCACATAACGGCCACAGTATCATGGTTGTGTGCTTGAGCTAAATTATCAAGATATCACATAAAAGGCACATTATCATGAGGTGTGCTTGAGTTTAAATTTGAAGACATCACATATTGTGAGGTATTTTGAAGAATTACCGTTAAAAACCGCTTTATCTACTTTATTTCATTTCTTAATATCTTATGGATGCCCTCCGAAATTAATGTTATTCAGCCGTGTTTCCTATCTTTTCATCAAAATTTTCGTTACTCGTAC

Ace file of the UniGene sp_v3.0_unigene141

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb\|AED92812.1\| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	-	-	4.0e-29	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	Gene names
Sma3	AT4g17940; At1g80130; At4g17940; At5g20190; F18B13.21; GSVIVT00015736001; OSIGBa0157K09-H0214G12.11; OSJNBa0004N05.2; OSJNBb0065L13.14; Os04g0510600; OsI_16606; POPTRDRAFT_657317; POPTRDRAFT_658073; POPTRDRAFT_826615; RCOM_0899880; VITISV_026571;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:6814093-6815171 FORWARD LENGTH=290	4.0e-34	57%
RefSeq	Arabidopsis thaliana	NP_197519.1	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]	5.0e-34	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPS5

Fln msg: your sequence is longer than subject: 373 - 306

Fln protein: MLLRSSSTPVLGSLIPPLPLPDNHRDKEGKVNFSSENANQLNFHNASSHLNSFSSLDSCSVDEDKEAIPSSNFRRVQSESDLRSLSRVSPAPAKVGPETLFQGNSFDDFQQASSKKPWSRRVSAHKRLPSLKSIPSFACYYDEEAVDERLEHDNDSGMVESQLQEFSFENEAMGEIVGRVKDLYTPERVEEKISAAPLFMARGLGLDVIDPQTDMGSSGGNSSWKGVYTGGSSGGDGFGAGPDNIEEHYQRMLEKNPGNSLVLRNYAQFLYESKHFHKAEEYYSRAILAQPDDGELLAQYAKLVWELHHDEERASAYFEQAVQASPEDCNVAAAYASFLWDTDTEEQEQDFSSLYNGTNVLGTLGYATTTVS*

Protein Length: 374

Fln nts: GCGTAGAAAGCGTTGGAGGACAATTTGTAATTGGCATCTGAGCATCCACAAATTCTTATTTTAATGGGAAGGGATTCGGTGAAGTTTGTGGAATCGGGTGGGATTCCGATGTCTCATGGCAAGTTGCTGCAGCTTTCCTGGCCAAGTTGCATGAAGCCTTGAGTCAGTCTGTGTGTGTGTGGGGCATCCGTATTCAATTTGTTTTTTTTTTTTTTTTTTCAGATCGGAGGAAGCATCTGGACTAGAATATCTCTCGCAGAATTGGATTGCCTTGGAGACTAGATTTCAGAGCAAATTCACGACTTTGAGGAGCCTTGGACAGCGAACCTTATAAATTTGGTGCATTCTGATCTGTTTTGACCGCAAACTCACGGGTAAGAGCTTCCATTTCTAAAGTATTTAGGAAACTCTTATTGAGCGAAGCGGATTTCTTGTTTTTGGCACGGCGCAGGGAAATTACCTTTGAATCGAAAGTTGTGAGTGTTTTTCTTCAATAAGAAGTCTGTTTTTCTTGAATAAGAAGGCTGTGCTTAAGTTTTGTTGAAGATTTGATCCTTTTGGCTCGGTTTTGCTCCATAGACCCGGCTTTTTCTCAGTTCACCTCAAGTTTGTTTAGTTTTCCCCAAAATTTGCATTTTTCTATAAAAAATGGCATGTACCGATGACATATTCTTGCTGTCAAGCTGCTGAATATTTGCTCCTCTTCGAGTCAGCGTTATTTACTTCTGCAAAAAACGTTTGATTTAATTTGGACAAATTTGCCAAGGCGTCTCAATTTGTGCTATTGCAGCCTAGAAGAAACATAAACCGTAAAGTTTATCGCCAAATCTTGATTTTTTGACAACA_-_ATGTTGCTCCGAAGCTCCTCCACACCGGTCCTGGGATCATTGATTCCACCGTTACCACTTCCAGATAATCACAGAGATAAAGAAGGGAAAGTGAATTTCTCGTCGGAAAATGCGAACCAGTTGAATTTCCACAATGCGAGTTCGCATCTTAATTCGTTTTCGAGCTTGGACAGCTGCTCCGTCGATGAAGACAAAGAGGCCATTCCGTCTTCCAATTTCAGGCGAGTTCAGTCGGAAAGCGATCTCCGGAGCCTAAGCCGAGTTTCACCTGCCCCAGCAAAGGTCGGCCCGGAAACTCTTTTCCAGGGTAACTCATTTGATGATTTTCAGCAAGCTTCTTCCAAAAAGCCTTGGTCTCGGAGGGTATCGGCTCACAAGAGATTACCCTCTCTGAAGTCAATCCCATCTTTTGCGTGTTATTATGATGAAGAGGCAGTAGATGAACGCTTGGAACATGATAACGATAGTGGCATGGTGGAATCTCAATTACAGGAGTTTAGTTTTGAAAATGAAGCCATGGGGGAAATAGTTGGAAGAGTGAAGGATCTTTACACACCGGAAAGAGTAGAGGAGAAGATATCCGCGGCACCGTTGTTTATGGCTCGGGGACTTGGCCTCGATGTCATAGATCCTCAAACCGATATGGGAAGCAGTGGCGGAAACTCTTCTTGGAAAGGGGTTTACACTGGTGGAAGTAGTGGTGGTGACGGATTTGGAGCTGGGCCTGATAATATTGAGGAGCATTATCAGAGAATGCTCGAGAAGAATCCTGGAAATTCTCTTGTTCTTAGGAACTACGCTCAGTTTTTGTACGAGTCAAAACACTTTCATAAAGCAGAAGAGTATTACTCAAGGGCAATTTTAGCTCAACCTGATGATGGGGAATTGTTAGCACAGTATGCTAAATTGGTATGGGAACTTCACCACGATGAAGAGAGGGCCTCCGCCTATTTTGAGCAAGCTGTGCAGGCCTCTCCTGAAGATTGTAATGTTGCTGCAGCATATGCATCCTTCCTCTGGGACACAGATACAGAAGAGCAAGAGCAGGATTTTTCCAGTTTGTACAATGGTACAAATGTTTTGGGAACTCTTGGTTATGCAACAACCACAGTATCATGA___TGTGTGCTTGAGCTAAAATCTCAAGAAATGATGAAAGAGTCAGAGTTGAAATCTCAAGATAGCACATAACGGCCACAGTATCATGGTTGTGTGCTTGAGCTAAATTATCAAGATATCACATAAAAGGCACATTATCATGAGGTGTGCTTGAGTTTAAATTTGAAGACATCACATATTGTGAGGTATTTTGAAGAATTACCGTTAAAAACCGCTTTATCTACTTTATTTCATTTCTTAATATCTTATGGATGCCCTCCGAAATTAATGTTATTCAGCCGTGTTTCCTATCTTTTCATCAAAATTTTCGTTACTCGTAC

Fln Alignment:

Contig141___DNIEEHYQRMLEKNPGNSLVLRNYAQFLYESK-HFHKAEEYYSRAILAQPDDGELLAQYAKLVWELHHDEERASAYFEQAVQASPEDCNVAAAYASFLWDTDTEEQEQDFSSLYNGTNVLGTLGYATTT
A9NPS5_____________DCTEVYFQKMLEANPGNSLLLRNYAKFLHEVQGNLAKAEEYYERAILASPGDGEVLALYAKLMWEVRRDAHHAEAYFDQAVQANPDDCFVLGSYAHFLWDSEEGEAGRADSEMQQSSAAL-VMSYNSAT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
2241	55	44			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
170	181	TG TG TG TG TG TG	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain