SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene130

Length: 1882 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene130

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00335, Tetraspannin, Tetraspanin family	-	-	9.0e-32	18%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Putative senescence-associated protein	-	-	9.808e-11	-

Source	Gene names
Sma3	AT4g28050; At2g19580; At2g23810; At3g45600; At4g28050; At4g28050/T13J8.160; At4g30430; At5g46700; At5g60220; B1063H10.10; F9K21.18; F9K21.180; GSVIVT00015754001; GSVIVT00016581001; GSVIVT00017103001; GSVIVT00017587001; GSVIVT00018220001; GSVIVT00024473001

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetraspanin, subgroup	IPR000301	-	-
Sma3	Tetraspanin	IPR018499	-	-
Sma3	Tetraspanin, conserved site	IPR018503	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G45600.1	TET3 tetraspanin3 chr3:16733973-16735854 REVERSE LENGTH=285	52%
RefSeq	Arabidopsis thaliana	NP_190146.1	tetraspanin3 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002314262.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV38

Fln msg:

Fln protein: MNHAANSIVGLINFLSFLLSIPIVGAGIWLATRNSGDCLRFLQWPVIIIGAAIMVLSLAGFVGACFRVTSLVWVYLFFVFVVVVVCVAFIMFAFAVGVVGLVHFLSGAAFEEYKLHDFSTWLQGRVKSSGSWNNIRSCVRDAGVCRKLGQKSVNAASFYQEHLTPIQSGCCKPPTPCGYSYVNATFWTGTLSYADSDCSIWSDDQSQLCYDCDSCKAGVLANLKHDWHKVSVLNIVIFILLVVVYVIGCGAFRNNVRRDNYESHGEATMTKSQPSRLHF*

Protein Length: 281

Fln nts: TGATACCACTGCTTAAGCAGAGGTATCAACGCAGAGTACGCGGGGCATGAGCAGACTGAAGTTTTCTAGCACGCTAGGGAGTGAAGAGCAGGTCTAGAGTTCGAAACGCAGCCTGCGCAAAGCGCTTTTGCAGAGTTCCAGAGTGGCGGTAGTTTGGATCTTAGTGAGAGCAGAGCATTTCATAGAGAAAGAAGAAGAAGAGTCAGAGAAACGGGCAGC_-_ATGAATCACGCCGCGAACAGCATAGTGGGGCTGATAAATTTCTTGTCGTTCTTACTGTCGATCCCAATCGTGGGCGCCGGGATATGGCTGGCCACTAGAAATAGCGGTGATTGCCTGAGGTTTCTTCAATGGCCCGTCATAATTATTGGGGCGGCCATCATGGTGCTATCTCTGGCAGGCTTTGTGGGGGCTTGTTTCAGAGTGACATCCCTCGTGTGGGTTTATCTTTTCTTCGTGTTTGTAGTGGTGGTAGTTTGCGTGGCGTTCATCATGTTTGCCTTCGCGGTGGGTGTGGTGGGGCTGGTCCATTTTTTGTCCGGGGCGGCCTTCGAGGAGTACAAGCTCCATGATTTCTCCACCTGGCTGCAAGGTCGCGTCAAAAGCTCTGGAAGCTGGAACAACATCAGGTCTTGTGTTCGAGACGCTGGGGTGTGCAGGAAACTTGGACAGAAGAGTGTGAACGCTGCAAGTTTCTATCAGGAGCATTTGACTCCGATTCAGTCGGGTTGTTGCAAACCACCAACTCCTTGTGGATACAGCTATGTAAATGCCACATTTTGGACTGGGACATTATCATATGCAGATTCGGACTGTTCAATATGGAGTGATGACCAAAGCCAGCTTTGTTATGATTGCGATTCATGCAAAGCTGGTGTTTTGGCAAATCTGAAGCATGACTGGCATAAGGTCTCTGTTCTGAACATTGTGATTTTCATATTGCTTGTTGTGGTGTATGTTATTGGATGCGGTGCTTTCAGAAATAACGTAAGAAGGGACAATTATGAGTCTCATGGAGAAGCCACGATGACAAAGTCCCAGCCTAGTAGGCTACACTTTTGA___GAACAGTTATATTTCTGTTTAGATGAACCCCCCTTTTGGTTTTCGAAGGTAAAATAGTTTTTATTTTTCGCATATTGCCTTTCAGGCATTCTATACAGTTGCCCTCTTGTACATTTACCTCAATAGCTGGTTATTTTCTTAGTCTTTCCTTGGCATGTTCTACCTTTTCATGGTTTAGATGTACTTTTAACAGACCTTTCATGTATGCAAATCCTGGCGGTTGGGGCTGTTTATGTTTTAGATATGAAGATTTAGGTTTTTTCATTTTTTTTTGCATTGGTCCTTGGCAGTTTCCAGGCTTACATAAATCAGGTTTTACGATCCAGTATCTGGTTATGATGTTCCTATGGGTTTCCTGGAATTCTCTGCCACACTAGTCTTTGCAATTCTTTGTGGTAACCTGTGTATATCCAGCCATTGTGTTGGCATGTTTGCTTGCCAGTCTGTAAAGAGTATATTGCCAGGGCTGACTACTGAATCACTGATAAGTAGTCATGTTGTACACAGTGCTTCCTTTAGATCATAATTTGATCCCTTTACCAGGAGCTTTTCACTGTGAGTATATTCATATCAACAGAGACAGTAAGTTCAATGGCAGGACAGTAAGGTTACAAGGGCTCTGCTGCTCTTTGGAGCCCCTAACATATTGTAATATTATTGATAGCCTTGTACTTTAGAAGCTGATACATTTCTTCTGTAATGATGATATGGAAAAAGTCTCTTATTTTTCGCTCTTTAATCTTTGTCAAACCATATATGGTTGTATTGGGAGAGGGTCTAAATTTGAGTACTTGAGACCTGAGAGAGCATATATATATCTGTT

Fln Alignment:

Contig130___MNHAANSIVGLINFLSFLLSIPIVGAGIWLATRNSGDCLRFLQWPVIIIGAAIMVLSLAGFVGACFRVTSLXXXXXXXXXXXXXXXXXXXXXXXXXGVVGLVHFLSGAAFEEYKLHDFSTWLQGRVKSSGSWNNIRSCVRDAGVCRKLGQKSV--NAASFYQEHLTPIQSGCCKPPTPCGYSYVNATFWTGTLSYADSDCSIW-SDDQSQLCYDCDSCKAGVLANLKHDWHKXXXXXXXXXXXXXXXXXXGCGAFRNNVRRDNYESHGEATMTKSQPSRLHF
A9NV38_____________MNHATNSIVGLINFLTFLLSIPIVGAGIWLATRHSGDCLRFLQWPIIIIGAAIMLLSLAGFMGACFRVTSLMWLYLFFMFLLLLAYLVFIIFAFAVAGKGHGHSVPGTGFEEYKLHDFSTWLQDRVRSSGSWNNIRSCVRDAGVCRKLGQKSMYESSAGFYQEHLTPIQSGCCKPPTPCGYTYVNATFWTGTISYADSDCSKWSSDDQSQLCYDCDSCKAGVLANLKHDWHKVSVLNIVIFILLVVVYVIGCGAFRNNLRRDNYESQGEARMTKSQPSRLPF

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1336	75		25		0.996473
1337			25	75	0.996473
1338			25	75	0.996473
1484			17	82	1.0
1508	95		1		0.911382
1615	5			94	0.998578
1616			94	5	0.998578
1781		88		11	0.923564
1787		11		88	0.923564
1788	11			88	0.923564
1790	11			88	0.923564
1792	12		87		0.992554
1793		87		12	0.992554
1796		16		83	0.994512
1798	25			75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
189	201	AAG AAG AAG AAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain