SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene129

Length: 2153 nt

UniGene Fasta

>sp_v3.0_unigene129
ATGGGGTTTTCTCTGAAGTATATGAAGCATTTAAAATAGCCTCTGACCAAAAAAGTCCATTGAGATTGCTGCTATATAACTCAGATTGCAATATGATGATGTTAAATAGTGCACAAACCCTCTGAGTTGCAGGCTGACACAGAGATTACAAATTTGTATCGCTGAAGTTACAATTGCCAGGTTATTGGTAAAAATATTGCCTGCAGTACCACGCGCAAACGCAGCCTCCTTCTGTACATCACACGCCATTTCGCCACCAACCCAAAAAATTCCTTGACAGGTTTAATAACCCCAACACCTGCCTAAATGGCCTAACATAGTGCCACGTGGTAGCAGCAGCAAAGCTCGTAAGGGTTAGATCACTGAGCTCAAAATGGTGGGAAAGTAGTTGAACAACCTCAACATCTTCCCTCCTCTTTATTCCCTAACCCTCTACAGAAATCCTCACAAACATGAGCACAATGGCGACAGGTAGAATCATGGTCGCATCTACTCCCTGTATTGCTCAGAAGCCCCAAGCCTACAGTGCGGGCAAGCTTCCGTGTGTTACTGCAAAACCTGGATGGCTCAGAAAGGATTCAATGGGCTCGAACCTCAGACGTTCGGAAGGCAGATCGACGAAATTGACACGTTCACCAGTGACAGTGTCTGCAATCGCATCAGCATCAGAGCTTGTGAAGGAGAATATGGATACAAAATCAGACCTGCTTGTCACACGGGAGGAGGGTTTGGTATTATACGAAGATATGGTGCTGGGCAGATCGTTCGAAGACATGTGTGCCCAGATGTATTACAGGGGAAAAATGTTTGGGTTTGTGCATCTCTACAATGGGCAGGAAGCTGTTTCAACTGGGTTTATTAAGATGCTGGAGGCTCATGATTCCGTCTGTAGCACTTACAGAGATCACGTGCATGCACTTAGCAAGGGAGTGTCTGCCCGAGCTGTGATGAGTGAACTATTTGGGAAGACTACTGGCTGTTGCAGAGGGCAAGGAGGCTCCATGCACATGTTTTCTAAAGAGCATGGTGTGCTGGGGGGTTTTGCTTTCATTGGAGAAGGAATTCCAGTTGCTCTGGGAGCTGCGTTCAGTAGCAAATATAAGCAAGAAGTGCTGAAGGATGACACGGCTGATGCAGTTACTGTTGCATTCTTTGGAGATGGGACATGCAATAACGGACAGTTCTTTGAATGCTTGAACATGGCTGCCCTTTGGAAGCTTCCGATTGTTTTTGTTGTTGAGAACAATTTGTGGGCTATTGGTATGTCCCACGTTAGGGCGACATCAGTTCCAGATATTTGGAAGAAAGGGCCTGCATTTGGGATGCCGGGTGTACATGTTGATGGTATGGATGTGTTGAAGGTTAGAGAAGTGGCTAAGGAGGCTGTGGCTAGGGCAAGGAGAGGGGACGGGCCAACTCTTGTTGAATGCGAGACATACAGATTCAGAGGTCATTCGTTGGCTGACCCTGACGAGCTTCGAGACCCCGTGGAAAAGGCTCATTATGCAGCAAGGGATCCTATAGTGTCATTTAGGAAATACCTTATAGAGAATAATCTTGCTAATGAATCAGATTTGAAGTCAATTGAAAAGAAAATTGATGAAATTATTGAGGATGCCGTGGAATTTGCTGATGCAAGCCCTCTGCCACAGCGTGGTCAGCTTCTTGAGAATGTGTTTGCAGATCCTAAAGGGTTTGGAATTGGTCCAGATGGGAGATATAGATGTGAAGAACCAGGTTTTACTGCAGGCATAGCACAGGTTTAGATGAGTCATAACTCATAATTGATCATTCCTTTGCTCCCGTTGACTCCTGGTGTTATTCTGGAGAGGCTGAGGGATGCAAAGACATAGGGGACCTAGGGTGTGGATAATATCATTGTAAAGCAAGATGAACTTTCTGCTTACCTGGCTGGTTTATTTAACTGGGGAAAATTTCTTAATCTGGGTTTTTTGTCCTTTACCTTTTTGAATGGTACATTGGTTGATTTGTACTTAGAATATTCTATTATTCAATTCTCAGTGAATTATGGGGTCGGAGTGCTATACACAATCTTTGTTGTGGGATCTTTTGCCGTGTATTACATTGTTTGATTTGTACTTAGAATATCCTATTATTCAATTCTCAGTCAATTATCAGGTGGGAAGTGCTAT

Ace file of the UniGene sp_v3.0_unigene129

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RNK3_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Dehydrogenase, E1 component	IPR001017	-	0.0	-
Sma3	Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y	IPR017597	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G01090.1	PDH-E1 ALPHA pyruvate dehydrogenase E1 alpha chr1:47705-49166 REVERSE LENGTH=428	79%
RefSeq	Arabidopsis thaliana	NP_171617.1	pyruvate dehydrogenase E1 component subunit alpha [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002301442.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRC3

Fln msg:

Fln protein: MSTMATGRIMVASTPCIAQKPQAYSAGKLPCVTAKPGWLRKDSMGSNLRRSEGRSTKLTRSPVTVSAIASASELVKENMDTKSDLLVTREEGLVLYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKMLEAHDSVCSTYRDHVHALSKGVSARAVMSELFGKTTGCCRGQGGSMHMFSKEHGVLGGFAFIGEGIPVALGAAFSSKYKQEVLKDDTADAVTVAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHVRATSVPDIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVARARRGDGPTLVECETYRFRGHSLADPDELRDPVEKAHYAARDPIVSFRKYLIENNLANESDLKSIEKKIDEIIEDAVEFADASPLPQRGQLLENVFADPKGFGIGPDGRYRCEEPGFTAGIAQV*

Protein Length: 439

Fln nts: ATGGGGTTTTCTCTGAAGTATATGAAGCATTTAAAATAGCCTCTGACCAAAAAAGTCCATTGAGATTGCTGCTATATAACTCAGATTGCAATATGATGATGTTAAATAGTGCACAAACCCTCTGAGTTGCAGGCTGACACAGAGATTACAAATTTGTATCGCTGAAGTTACAATTGCCAGGTTATTGGTAAAAATATTGCCTGCAGTACCACGCGCAAACGCAGCCTCCTTCTGTACATCACACGCCATTTCGCCACCAACCCAAAAAATTCCTTGACAGGTTTAATAACCCCAACACCTGCCTAAATGGCCTAACATAGTGCCACGTGGTAGCAGCAGCAAAGCTCGTAAGGGTTAGATCACTGAGCTCAAAATGGTGGGAAAGTAGTTGAACAACCTCAACATCTTCCCTCCTCTTTATTCCCTAACCCTCTACAGAAATCCTCACAAAC_-_ATGAGCACAATGGCGACAGGTAGAATCATGGTCGCATCTACTCCCTGTATTGCTCAGAAGCCCCAAGCCTACAGTGCGGGCAAGCTTCCGTGTGTTACTGCAAAACCTGGATGGCTCAGAAAGGATTCAATGGGCTCGAACCTCAGACGTTCGGAAGGCAGATCGACGAAATTGACACGTTCACCAGTGACAGTGTCTGCAATCGCATCAGCATCAGAGCTTGTGAAGGAGAATATGGATACAAAATCAGACCTGCTTGTCACACGGGAGGAGGGTTTGGTATTATACGAAGATATGGTGCTGGGCAGATCGTTCGAAGACATGTGTGCCCAGATGTATTACAGGGGAAAAATGTTTGGGTTTGTGCATCTCTACAATGGGCAGGAAGCTGTTTCAACTGGGTTTATTAAGATGCTGGAGGCTCATGATTCCGTCTGTAGCACTTACAGAGATCACGTGCATGCACTTAGCAAGGGAGTGTCTGCCCGAGCTGTGATGAGTGAACTATTTGGGAAGACTACTGGCTGTTGCAGAGGGCAAGGAGGCTCCATGCACATGTTTTCTAAAGAGCATGGTGTGCTGGGGGGTTTTGCTTTCATTGGAGAAGGAATTCCAGTTGCTCTGGGAGCTGCGTTCAGTAGCAAATATAAGCAAGAAGTGCTGAAGGATGACACGGCTGATGCAGTTACTGTTGCATTCTTTGGAGATGGGACATGCAATAACGGACAGTTCTTTGAATGCTTGAACATGGCTGCCCTTTGGAAGCTTCCGATTGTTTTTGTTGTTGAGAACAATTTGTGGGCTATTGGTATGTCCCACGTTAGGGCGACATCAGTTCCAGATATTTGGAAGAAAGGGCCTGCATTTGGGATGCCGGGTGTACATGTTGATGGTATGGATGTGTTGAAGGTTAGAGAAGTGGCTAAGGAGGCTGTGGCTAGGGCAAGGAGAGGGGACGGGCCAACTCTTGTTGAATGCGAGACATACAGATTCAGAGGTCATTCGTTGGCTGACCCTGACGAGCTTCGAGACCCCGTGGAAAAGGCTCATTATGCAGCAAGGGATCCTATAGTGTCATTTAGGAAATACCTTATAGAGAATAATCTTGCTAATGAATCAGATTTGAAGTCAATTGAAAAGAAAATTGATGAAATTATTGAGGATGCCGTGGAATTTGCTGATGCAAGCCCTCTGCCACAGCGTGGTCAGCTTCTTGAGAATGTGTTTGCAGATCCTAAAGGGTTTGGAATTGGTCCAGATGGGAGATATAGATGTGAAGAACCAGGTTTTACTGCAGGCATAGCACAGGTTTAG___ATGAGTCATAACTCATAATTGATCATTCCTTTGCTCCCGTTGACTCCTGGTGTTATTCTGGAGAGGCTGAGGGATGCAAAGACATAGGGGACCTAGGGTGTGGATAATATCATTGTAAAGCAAGATGAACTTTCTGCTTACCTGGCTGGTTTATTTAACTGGGGAAAATTTCTTAATCTGGGTTTTTTGTCCTTTACCTTTTTGAATGGTACATTGGTTGATTTGTACTTAGAATATTCTATTATTCAATTCTCAGTGAATTATGGGGTCGGAGTGCTATACACAATCTTTGTTGTGGGATCTTTTGCCGTGTATTACATTGTTTGATTTGTACTTAGAATATCCTATTATTCAATTCTCAGTCAATTATCAGGTGGGAAGTGCTAT

Fln Alignment:

Contig129___MSTMATGRIMVASTPCIAQKPQAYS-AGKLPCVTAKPGWLRKDSMGSNLRRSEGRSTKLTRSPVTVSAIASASELVKENMDTKSDLLVTREEGLVLYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKMLEAHDSVCSTYRDHVHALSKGVSARAVMSELFGKTTGCCRGQGGSMHMFSKEHGVLGGFAFIGEGIPVALGAAFSSKYKQEVLKDDTADAVTVAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHVRATSVPDIWKKGPAFGMPGVHVDGMDXXXXXXXXXXXXXXXXXGDGPTLVECETYRFRGHSLADPDELRDPVEKAHYAARDPIVSFRKYLIENNLANESXXXXXXXXXXXXXXXAVEFADASPLPQRGQLLENVFADPKGFGIGPDGRYRCEEPGFTAGIAQV
B8LRC3_____________MTTMSTARIPPASSPCIARKPKASSNTGKLPRVYVKPGWLRKDLMGSNLRFSEFRSAKLPCSPLTVSAIASASELVKERIETKSELLVTREEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKMLKAHDSVCSTYRDHVHALSKGVPARAVMSELFGKTTGCCRGQGGSMHMFSKEHGVLGGFAFIGEGIPVALGAAFSSKYKQEVLKDEKANAVTVAFFGDGTCNNGQFFESLNMAALWKLPIIFVVENNLWAIGMSHIRATSVPDIWEKGPAFGMPGVHVDGMDVLKVREVAKEAVARARRGDGPTLVECETYRFRGHSLADPDELRNPAEKAHYAARDPIVSLKKYLIENNLANESDLKSIEKKIDEIIEEAVEFADASPLPQRGQLLENVFADPKGFGIGPDGRYRCEDPGFTAGTAQV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
2001	11			88	0.999937
2003			11	88	0.999937
2125		33		66	1.0
2135	50	50			1.0
2137		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain