SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene128

Length: 2624 nt

UniGene Fasta

>sp_v3.0_unigene128
GTTTACCGGACGGCCAAAGATGAAGGTGTTGGCGGTATTCTGTCACCGAAGAAGGATTTCCTGCATTGAAACCCTTGGTCATGGCGATCCATCTTCACCTTTACCGGATGTTACGATTTTGGATTTGGAAGCTGTCATTCTCTCCAAAATTTTACGAAATTCACGCGCTGGACGAAGATAACAAGAAGAATTCCTTCCAGATGAATTGATAAGCTGGCTTTCTTTCTACGCTATAATGATTTTTCTTTAATCGCTCCCAGATATGGCCATTGATATACCTGTAATGTGAAGGGTTTTATTGACGGCCGAGTTCTTTTAAGGAGCCTTCTGTCTGCTTTTACTCGGTCTGTGGTTTGGAGCGGACGGCGGGTTTTGTCTTGGTGAATTCAAGAGATTTCCTTCTTTTTGGCGAATAAACCCTTTTTTGGCAAAGGCAGAGTACATTCAATGGTTGCTAGGTGCAGATTTGTTCAAGTGGTTGCGAAATGACCTGTGCATGTTGAGAAAAATTTGTCTTCTTCGTCTTTTCAAGCGCGAAGACTCAGATCGGAGTCTGCCTTGGCTTCAGGTAATTTCACCTAGCCATATTTCGTAATAACAGCATTCAGTACTATGCTACGGAGCTTCAAATTCGGTTCTGAATAGTCGGATCCATTTATTCCCACACGCGCTTACAAGAAAATTAATATTGAAAGTGTAATTGTGCCCTCTCAAAGTTGAAATATGCGGACCAGGAGAGCATGTTATCCGACCCCTTCAGACGGAATTACATTCACGATAAGACCTTCACGGCAGAAACAGCCAATGCGGCAAAATCCAGAGAAAATTGTAAAGCAAAAGTGGAGAGTTCGAAACTGCTCCGGTCCTTTTGACAGTCTTCATGACGATATTTTGATATCTATTATGATAGCTCTCAGCTCTTCGGCAAACTCTCCTGCTGATCTTGTTAGCACGATGCTTACGTGTAGAAGGTTCTGTGCAACTGTAACGCTTCCTCAGGTGCTTGCCCATGCTTCCATGATGGCTCTTTCAGTAAAAGCTTCAAAATGGTCAGATGATGCTCATAGATTTTTGAAAAGATGCGCAGACGCAGGCAATCGGGAGGCCTGTTACACACTTGGCATGATTCACTTCTATTGCCTCAGGAACAGGGTTTCAGGTCTGGCCTTGATGGCAGAGGCTGCAATTGCATCGCATCCAGCTGCTCTCCATTCTTTAGCTGTTATACAGTTCAATGGTAGTGGAGGATCAAGAAAGGATAAAGATTTGAAAGCAGGAGTAGTTCTATGTGCGAAAGCAGCAGCTCTTGGCCAGGTAGATGCGATGCGAGAACTTGGCCATTGCTTGCAGGATGGCTACGGAGTGACGAAGAATGTTGCAGAGGGAAGGAAATACCTTCTAGAAGCTAATGCAAGAGAGGCTGAGGTTGTTAGAGAACCATCTATGCAGGTTTCTGTTGATGCCAAGCGACAGTCTCGCATAATATGCAATGGAGCTTATGCCCATCTAGAACTGCAAAGTCAGTCTCTGCTAAATAAGTTGGGTGGTTCTCTGTTGCGGGGCCATGCTTCTGTTAGTGACCAGTACTCTGTTCAAAGGCTCATTGAAAGAGATGACTGCTCATCCTTTAGTGATTTTGGCTGCAAAACGCTGCCTGTAAATATTTATGTGGCTAATGCATTTCTTGTGGATTGGTTTGCTGCACATCCACCGGAGTTAGGTTTAAGATTATGTTCTCATTCAAAATGTGGGCGACCAGAAACCCGAAGACATGAATTCAGAAGGTGTTCTGCATGTGGTTCTGTCAATTATTGCTCACGTGCTTGTCAAGCTATGGACTGGAAACTCTATCACAGACATCACTGTGCACCAGTGGCAGATTGGGAGGAACATGAAGAAATTGATATAGACGAAGAGGATAATATTGAGGATCACATCCTTGCAGATAACTTTGATGACTCTTAGGGGCTATCCTCAACACGTTTCTTTTTTAACAAACTTGATTATATAGCAACTACTTTAGTTTTTTGGGCCATGTTTTGATGTCAAGAAAAGCACCTGGGTATCATTTCATAACATATATGAGAGCAGAGTACCGTCTTTGGTAGCTTTAGCAACACTGCTCTTGATGCATGCACTTGGGAGCCAGATCGTCATTCTTTGTTCTGCAGGTCTGAAAATTTTGAGATACAGTTAGCTTCATTGTTGCCCATCAAAGTCTTGTGTTGTGGTGCTTTCTGTTTGTAAAAGTGCGAGGATTTTATATGCCTACGAGTGGAGCTGCAAAATGCTTGGCATCGTGATTGAATTGATGCCATTCTGACAGTCATAGACGATCAAATCAGGCCAAGTGAATCCGTTGGTATTCCATTTATATGTGCATGCATGGAATTCTATTTTTGCAACCTTGTATGCAGAAATGCTCGTATATCTAGCGTTTACGGTTTCCCAGGTTTCTTTAATAATACACTACCATATAAAGTCCGATACTCTTTTGTGCATAAAACATAGATGTTTGTTGCATTTTGCCACTTGCATTAGCTGTTAAATTAATTTGTGAGAACTGTCTAACTAATGTTTGCCTTCCACAGTTCTATATGATATTTTTATTAATTTATTGAGTC

Ace file of the UniGene sp_v3.0_unigene128

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger (MYND type) family protein / F-box family protein [Arabidopsis thaliana] sp\|Q9FYF9.1\|FB76_ARATH RecName: Full=F-box protein At1g67340 gb\|AAG00241.1\|AC002130_6 F1N21.16 [Arabidopsis thaliana] gb\|AAL14418.1\| At1g67340/F1N21_16 [Arabidopsis thali	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	MYND finger family protein	-	-	6.253e-08	-

Source	Gene names
Sma3	At1g67340; At5g50450; B1793G04.24; F1N21.16; GSVIVT00002811001; LOC_Os11g29710; OJ1485_B09.11; OSJNBa0044M19.1; OSJNBa0084N21.16; Os01g0921800; Os02g0506400; Os04g0385600; OsI_01548; OsI_04973; OsI_07351; OsI_15641; OsI_36133; OsJ_06852; OsJ_14552; P0047E

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, MYND-type	IPR002893	-	-
Sma3	Sel1-like	IPR006597	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G67340.1	HCP-like superfamily protein with MYND-type zinc finger chr1:25230323-25231622 FORWARD LENGTH=379	51%
RefSeq	Arabidopsis thaliana	NP_564894.1	zinc finger (MYND type) family protein / F-box family protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002297844.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB59

Fln msg: your sequence is longer than subject: 414 - 264

Fln protein: MRTRRACYPTPSDGITFTIRPSRQKQPMRQNPEKIVKQKWRVRNCSGPFDSLHDDILISIMIALSSSANSPADLVSTMLTCRRFCATVTLPQVLAHASMMALSVKASKWSDDAHRFLKRCADAGNREACYTLGMIHFYCLRNRVSGLALMAEAAIASHPAALHSLAVIQFNGSGGSRKDKDLKAGVVLCAKAAALGQVDAMRELGHCLQDGYGVTKNVAEGRKYLLEANAREAEVVREPSMQVSVDAKRQSRIICNGAYAHLELQSQSLLNKLGGSLLRGHASVSDQYSVQRLIERDDCSSFSDFGCKTLPVNIYVANAFLVDWFAAHPPELGLRLCSHSKCGRPETRRHEFRRCSACGSVNYCSRACQAMDWKLYHRHHCAPVADWEEHEEIDIDEEDNIEDHILADNFDDS*

Protein Length: 415

Fln nts: GTTTACCGGACGGCCAAAGATGAAGGTGTTGGCGGTATTCTGTCACCGAAGAAGGATTTCCTGCATTGAAACCCTTGGTCATGGCGATCCATCTTCACCTTTACCGGATGTTACGATTTTGGATTTGGAAGCTGTCATTCTCTCCAAAATTTTACGAAATTCACGCGCTGGACGAAGATAACAAGAAGAATTCCTTCCAGATGAATTGATAAGCTGGCTTTCTTTCTACGCTATAATGATTTTTCTTTAATCGCTCCCAGATATGGCCATTGATATACCTGTAATGTGAAGGGTTTTATTGACGGCCGAGTTCTTTTAAGGAGCCTTCTGTCTGCTTTTACTCGGTCTGTGGTTTGGAGCGGACGGCGGGTTTTGTCTTGGTGAATTCAAGAGATTTCCTTCTTTTTGGCGAATAAACCCTTTTTTGGCAAAGGCAGAGTACATTCAATGGTTGCTAGGTGCAGATTTGTTCAAGTGGTTGCGAAATGACCTGTGCATGTTGAGAAAAATTTGTCTTCTTCGTCTTTTCAAGCGCGAAGACTCAGATCGGAGTCTGCCTTGGCTTCAGGTAATTTCACCTAGCCATATTTCGTAATAACAGCATTCAGTACTATGCTACGGAGCTTCAAATTCGGTTCTGAATAGTCGGATCCATTTATTCCCACACGCGCTTACAAGAAAATTAATATTGAAAGTGTAATTGTGCCCTCTCAAAGTTGAAAT_-_ATGCGGACCAGGAGAGCATGTTATCCGACCCCTTCAGACGGAATTACATTCACGATAAGACCTTCACGGCAGAAACAGCCAATGCGGCAAAATCCAGAGAAAATTGTAAAGCAAAAGTGGAGAGTTCGAAACTGCTCCGGTCCTTTTGACAGTCTTCATGACGATATTTTGATATCTATTATGATAGCTCTCAGCTCTTCGGCAAACTCTCCTGCTGATCTTGTTAGCACGATGCTTACGTGTAGAAGGTTCTGTGCAACTGTAACGCTTCCTCAGGTGCTTGCCCATGCTTCCATGATGGCTCTTTCAGTAAAAGCTTCAAAATGGTCAGATGATGCTCATAGATTTTTGAAAAGATGCGCAGACGCAGGCAATCGGGAGGCCTGTTACACACTTGGCATGATTCACTTCTATTGCCTCAGGAACAGGGTTTCAGGTCTGGCCTTGATGGCAGAGGCTGCAATTGCATCGCATCCAGCTGCTCTCCATTCTTTAGCTGTTATACAGTTCAATGGTAGTGGAGGATCAAGAAAGGATAAAGATTTGAAAGCAGGAGTAGTTCTATGTGCGAAAGCAGCAGCTCTTGGCCAGGTAGATGCGATGCGAGAACTTGGCCATTGCTTGCAGGATGGCTACGGAGTGACGAAGAATGTTGCAGAGGGAAGGAAATACCTTCTAGAAGCTAATGCAAGAGAGGCTGAGGTTGTTAGAGAACCATCTATGCAGGTTTCTGTTGATGCCAAGCGACAGTCTCGCATAATATGCAATGGAGCTTATGCCCATCTAGAACTGCAAAGTCAGTCTCTGCTAAATAAGTTGGGTGGTTCTCTGTTGCGGGGCCATGCTTCTGTTAGTGACCAGTACTCTGTTCAAAGGCTCATTGAAAGAGATGACTGCTCATCCTTTAGTGATTTTGGCTGCAAAACGCTGCCTGTAAATATTTATGTGGCTAATGCATTTCTTGTGGATTGGTTTGCTGCACATCCACCGGAGTTAGGTTTAAGATTATGTTCTCATTCAAAATGTGGGCGACCAGAAACCCGAAGACATGAATTCAGAAGGTGTTCTGCATGTGGTTCTGTCAATTATTGCTCACGTGCTTGTCAAGCTATGGACTGGAAACTCTATCACAGACATCACTGTGCACCAGTGGCAGATTGGGAGGAACATGAAGAAATTGATATAGACGAAGAGGATAATATTGAGGATCACATCCTTGCAGATAACTTTGATGACTCTTAG___GGGCTATCCTCAACACGTTTCTTTTTTAACAAACTTGATTATATAGCAACTACTTTAGTTTTTTGGGCCATGTTTTGATGTCAAGAAAAGCACCTGGGTATCATTTCATAACATATATGAGAGCAGAGTACCGTCTTTGGTAGCTTTAGCAACACTGCTCTTGATGCATGCACTTGGGAGCCAGATCGTCATTCTTTGTTCTGCAGGTCTGAAAATTTTGAGATACAGTTAGCTTCATTGTTGCCCATCAAAGTCTTGTGTTGTGGTGCTTTCTGTTTGTAAAAGTGCGAGGATTTTATATGCCTACGAGTGGAGCTGCAAAATGCTTGGCATCGTGATTGAATTGATGCCATTCTGACAGTCATAGACGATCAAATCAGGCCAAGTGAATCCGTTGGTATTCCATTTATATGTGCATGCATGGAATTCTATTTTTGCAACCTTGTATGCAGAAATGCTCGTATATCTAGCGTTTACGGTTTCCCAGGTTTCTTTAATAATACACTACCATATAAAGTCCGATACTCTTTTGTGCATAAAACATAGATGTTTGTTGCATTTTGCCACTTGCATTAGCTGTTAAATTAATTTGTGAGAACTGTCTAACTAATGTTTGCCTTCCACAGTTCTATATGATATTTTTATTAATTTATTGAGTC

Fln Alignment:

Contig128___MAEAAIASHPAALHSLAVIQFNGSGGSRKDKDLKAGVVLCAKAAALGQVDAMRELGHCLQDGYGVTKNVAEGRKYLLXXXXXXXXXXXXPSMQVSVDAKRQSRIICNGAYAHLELQSQSLLNKLGGSLLRGHASVSDQYSVQRLIERDDCSSFSDFGCKTLPVNIYVANAFLVDWFAAHPPELGLRLCSHSKCGRPETRRHEFRRCSACGSVNYCSRACQAMDWKLYHRHHCAPVADWXXXXXXXXXXXXXXXXXXLADNFDDS
D5AB59_____________MAEAAIASHPAALHSLAVIQFNGSGGSRKDKDLKAGVVLCAKAAALGQVDAMRELGHCLQDGYGVKKNVAEGRQYLLEANAREAEVVREPSMQASAHAELQSLIICNGGYAHLNLQSQSLLNKLSGSLVQGHTSVSDQYSVQRLIERDDSSSLSDFSCKMMPSNIYVANAFLVDWFAEHPPELGLRLCSHSKCGRPETRRHEFRRCSACGSVNYCSRACQAMDWKLYHRHHCAPVADWEEHEEIDRDEEDNIEDHILADNLDAS

SNPs (tot: 81)

Position	A %	C %	G %	T %	Probability
198		33		66	0.997452
309		50		50	1.0
483	33			66	1.0
528		20		80	0.995493
601	83	16			0.994512
1086		87		12	0.992554
1122		14		85	0.993533
1129	85		14		0.993533
1131	28			71	1.0
1132		85	14		0.993533
1134	16	83			0.994512
1135		16		83	0.994512
1138	16			83	0.994512
1140			20	80	0.995493
1141	20			80	0.995493
1143	20	80			0.995493
1145	20			80	0.995493
1148		25	75		0.996473
1149	25		75		0.996473
1157	25			75	0.996473
1158	25			75	0.996473
1160	25	75			0.996473
1162	25		75		0.996473
1171			20	80	0.995493
1172	20			80	0.995493
1173		12	87		0.992554
1177		12	87		0.992554
1178	12	87			0.992554
1183	11		88		0.923564
1184	11	88			0.923564
1187		88		11	0.923564
1212	12	87			0.992554
1220	12			87	0.992554
1223		87		12	0.992554
1414	16			83	0.994512
1418	83			16	0.994512
1419			83	16	0.994512
1446	20	80			0.995493
1447		20		80	0.995493
1450			80	20	0.995493
1619			20	80	0.995493
1638	80			20	0.995493
1648		75		25	0.996473
1717	16		83		0.994512
1725	16		83		0.994512
1991		10		90	0.90298
1992	10			90	0.90298
1998	90		10		0.90298
1999		90		10	0.90298
2001	90	10			0.90298
2002	90	10			0.90298
2007	88		11		0.923564
2008		11		88	0.923564
2010	88		11		0.923564
2011		10		90	0.90298
2014	80	20			0.999996
2016		90		10	0.90298
2017	88		11		0.923564
2018	77			11	0.968132
2019		77		11	0.968132
2021	87		12		0.992554
2024			12	87	0.992554
2027		12	87		0.992554
2029		12		87	0.992554
2040		10		90	0.90298
2043		10		90	0.90298
2044			10	90	0.90298
2048		10		90	0.90298
2049		11	88		0.923564
2051		88		11	0.923564
2052	88		11		0.923564
2055	88	11			0.923564
2056	88			11	0.923564
2057	88		11		0.923564
2058	88			11	0.923564
2065		12	87		0.992554
2066	12		87		0.992554
2083		12		87	0.992554
2441	40		60		1.0
2502	14			85	0.993533
2507	60			40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain