SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene121

Length: 2431 nt

UniGene Fasta

>sp_v3.0_unigene121
GATCGTGTTTTGTTGGTATTTTCAGCTTTTGTATTGTTTGGACCACTAATCTCTCAGCACGTGCCAGTTTCATTGGGTTTCGTTGCTTCGAAGTCGCCAAATTTCTGTACATGTGGACAAGTTTTTGTTGCAGGTACTTGTCTCCAGCTGTGTTGATGGGGTTGGAATGCATCTGCAAAACCTATCTTTCTTTGTGATCTCTTAGTAGGATCAATCAACCAGGAACACAACTATTGCTATGAGATAAGTAGGAAGGAAACAATTTTCCGTTGTTGCCTGCACGCAAGAAACTTTTGGCCCTGAGACATTGAATCCAGTTTCTTATATTTCATGTTTAGATTCCAAAGTTGGTAGAACATATTTCATTGAAAGAGGCATGGAGAGACCTGGCTCACCTCTGGTTCATGGCAATGAGAGAGATTTGTTGAAAGAACCGCTTATAGGAAGAAATGGTGAGGAAACTCAGCTGCTTTTCACGTTCGGAGACGAACACAAGCCTGGAACTTATGAACTAGAGCCTTCGGATGATGCAAAGTGCACTCCAAGAGCTGTATGGGAGGAAGTCAAAAAACTGTACTGGATAGCAGGACCTATGATTGGAGTGAACCTGTTGCAATATTGCATGCAGGTGATATCTGTTATGTTGGTGGGGCATTTAGGAGAGCTTCCACTGTCCAGTGCTGCTATCGCTACTTCTTTTGCAGGTGTTACCGGGTTTAGTGTGTTGATGGGAATGGGAAGTGCATTAGAGACACTTTGTGGACAAGCCTATGGAGCAAAGCAATATCATTTACTCGGGATTCAGATGCAGAGAGCAATTTTTGCTCTTTTTTGTGTGAGCATACCACTTGCAGTGATATGGGCATATATGGGACATATTCTTGCAGCCCTTGGGCAAGACCCTTTAATATCTTTTGAAGCAGGGAAATTTGCAAGATGGATGATTCCCAGTTTGTTTGCTTACGCAGTTCTTCAGCCCCTCGTTAAATTTCTTCAATCACAGGGGATCGTCTTTCCAATGATGTTAAGCTCTGCAATAACTCTCTCTTTGCATGTCCCCATCTGCTGGGTATTGGTGTTCAAAGTTGGATTAGGTAATAAAGGGGCTGCATTGGCAAACAGCATTTCCAATTGGCTGAATGTAGCACTTCTGTCACTTTATGTTATATTTTCCCCTGCATGTCAGAAGACACGGACATCCTTCTCAAGGGAAGCTTTATCTGATATCAATAGCTTTCTCAAGCTTGCTATTCCGTCTGCAGTGATGGTCTGCTTGGAGTACTGGTCTTTTGAAATGCTTATTCTCCTCTCCGGTTTGTTGCCTAAACCACAGCTTGAGATGTCAGTTCTCTCCATCTGCCTCAGCACTGCTTCACTTGCATATATGATTCCCTTTGGTCTGGGTGCTGCTGTGAGTACACGAGTTTCCAATGAACTAGGAGCTGGACACCCACGTGCTGCACAGTTCTCAGTGCATGTTGCGCTTTATATGTCGGCCATGGAGGCCCTCGTGATAGGAACTACTTTATTCTCTATTCGAGATGTCTGGGGCTATGCTTATAGCAACGAAGGAGAGGTAGTTGACTATGTTTCAAGCATGATGCCGCTACTTGCATGCTCAACCATTTTGGATGGCATCCAAGGTGTTCTATCAGGTATTGCTAGAGGATGTGGATGGCAAAAGTTAGGTGCCTATGCAAATCTTGGGGCATACTATGTGGTTGGAATTCCAATGGCGGTAACTTTGGCCTTTCTACTCCATCTTGGTGGCAGGGGACTTTGGATTGGAATTCTTTGTGGGCTTTGTGCACAAGCAATTCTACTGTTCATAATAACGTTGTGTACGGATTGGGGAAAGCAGGCAAAAGAGGCAAGAGAAAGAGTATATGCATCATTATTGCCCACTGTTACTGGTAATATAATAAAGGACGAGCAATAAGGTTTTCAGCCTGGATCGTTGGAGTCAATTTTCAATCCCTCATAACAGAAGCGGAAACTCATGGGTGCTTTCACATATGCTAAAATGTGCCTTGCCTGTTTCACCTCTGCAAAAGAAAAGGCTTCTGTGAATGTTTTATTCAACCAGATATCACGGTGGATGAAAGCAAAATCCCGTTGTTAAATGGAGATAAATTTAGGAGATTGGCATCCTTGCAAATAGAGTAGAAAATCCTTTTGTGGATGGATAAGGAGAATGATTCTTTGATTCACTCCTCACACCCTCCTATATTTATATGCCCTTGTTACTCACAGTCCTTACAAAGAATGATATATATTTTTTCTATGGAAACAGAAACATTTTGAAGTATGATATAATGCTGTGGGGTTCCTGAAATGGAAACCTTTTGAAGCACAATGTAAGTTTCTCCAATGAAACCTTTTGAAGCACAATGTAAGTTTCTCCAATAAATATATTAATGTTTCCTGGACC

Ace file of the UniGene sp_v3.0_unigene121

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mate efflux domain-containing protein [Arabidopsis thaliana] dbj\|BAB10542.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK76728.1\| unknown protein [Arabidopsis thaliana] gb\|AAL85047.1\| unknown protein [Arabidopsis thaliana] gb\|AED96215.1\| mate eff	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	TRANSPARENT TESTA 12 protein, putative	-	-	1.161e-36	-

Source	Gene names
Sma3	ALF5; AT4G21910; At1g11670; At1g15150; At1g15170; At1g15180; At1g47530; At1g61890; At1g64820; At1g66760; At1g71140; At1g73700; At2g04040; At2g04050; At2g04070; At2g04080; At2g04080/F3L12.9; At2g04090; At2g04100; At2g34360; At3g21690; At3g23550; At3g23550/

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3		GO:0015559	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	sequestering of metal ion	GO:0051238	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Ribulose bisphosphate carboxylase, large subunit, C-terminal	IPR000685	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3		IPR015521	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G52450.1	MATE efflux family protein chr5:21289042-21291749 REVERSE LENGTH=486	61%
RefSeq	Arabidopsis thaliana	NP_200058.1	mate efflux domain-containing protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002314825.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADQ8

Fln msg:

Fln protein: MERPGSPLVHGNERDLLKEPLIGRNGEETQLLFTFGDEHKPGTYELEPSDDAKCTPRAVWEEVKKLYWIAGPMIGVNLLQYCMQVISVMLVGHLGELPLSSAAIATSFAGVTGFSVLMGMGSALETLCGQAYGAKQYHLLGIQMQRAIFALFCVSIPLAVIWAYMGHILAALGQDPLISFEAGKFARWMIPSLFAYAVLQPLVKFLQSQGIVFPMMLSSAITLSLHVPICWVLVFKVGLGNKGAALANSISNWLNVALLSLYVIFSPACQKTRTSFSREALSDINSFLKLAIPSAVMVCLEYWSFEMLILLSGLLPKPQLEMSVLSICLSTASLAYMIPFGLGAAVSTRVSNELGAGHPRAAQFSVHVALYMSAMEALVIGTTLFSIRDVWGYAYSNEGEVVDYVSSMMPLLACSTILDGIQGVLSGIARGCGWQKLGAYANLGAYYVVGIPMAVTLAFLLHLGGRGLWIGILCGLCAQAILLFIITLCTDWGKQAKEARERVYASLLPTVTGNIIKDEQ*

Protein Length: 522

Fln nts: GATCGTGTTTTGTTGGTATTTTCAGCTTTTGTATTGTTTGGACCACTAATCTCTCAGCACGTGCCAGTTTCATTGGGTTTCGTTGCTTCGAAGTCGCCAAATTTCTGTACATGTGGACAAGTTTTTGTTGCAGGTACTTGTCTCCAGCTGTGTTGATGGGGTTGGAATGCATCTGCAAAACCTATCTTTCTTTGTGATCTCTTAGTAGGATCAATCAACCAGGAACACAACTATTGCTATGAGATAAGTAGGAAGGAAACAATTTTCCGTTGTTGCCTGCACGCAAGAAACTTTTGGCCCTGAGACATTGAATCCAGTTTCTTATATTTCATGTTTAGATTCCAAAGTTGGTAGAACATATTTCATTGAAAGAGGC_-_ATGGAGAGACCTGGCTCACCTCTGGTTCATGGCAATGAGAGAGATTTGTTGAAAGAACCGCTTATAGGAAGAAATGGTGAGGAAACTCAGCTGCTTTTCACGTTCGGAGACGAACACAAGCCTGGAACTTATGAACTAGAGCCTTCGGATGATGCAAAGTGCACTCCAAGAGCTGTATGGGAGGAAGTCAAAAAACTGTACTGGATAGCAGGACCTATGATTGGAGTGAACCTGTTGCAATATTGCATGCAGGTGATATCTGTTATGTTGGTGGGGCATTTAGGAGAGCTTCCACTGTCCAGTGCTGCTATCGCTACTTCTTTTGCAGGTGTTACCGGGTTTAGTGTGTTGATGGGAATGGGAAGTGCATTAGAGACACTTTGTGGACAAGCCTATGGAGCAAAGCAATATCATTTACTCGGGATTCAGATGCAGAGAGCAATTTTTGCTCTTTTTTGTGTGAGCATACCACTTGCAGTGATATGGGCATATATGGGACATATTCTTGCAGCCCTTGGGCAAGACCCTTTAATATCTTTTGAAGCAGGGAAATTTGCAAGATGGATGATTCCCAGTTTGTTTGCTTACGCAGTTCTTCAGCCCCTCGTTAAATTTCTTCAATCACAGGGGATCGTCTTTCCAATGATGTTAAGCTCTGCAATAACTCTCTCTTTGCATGTCCCCATCTGCTGGGTATTGGTGTTCAAAGTTGGATTAGGTAATAAAGGGGCTGCATTGGCAAACAGCATTTCCAATTGGCTGAATGTAGCACTTCTGTCACTTTATGTTATATTTTCCCCTGCATGTCAGAAGACACGGACATCCTTCTCAAGGGAAGCTTTATCTGATATCAATAGCTTTCTCAAGCTTGCTATTCCGTCTGCAGTGATGGTCTGCTTGGAGTACTGGTCTTTTGAAATGCTTATTCTCCTCTCCGGTTTGTTGCCTAAACCACAGCTTGAGATGTCAGTTCTCTCCATCTGCCTCAGCACTGCTTCACTTGCATATATGATTCCCTTTGGTCTGGGTGCTGCTGTGAGTACACGAGTTTCCAATGAACTAGGAGCTGGACACCCACGTGCTGCACAGTTCTCAGTGCATGTTGCGCTTTATATGTCGGCCATGGAGGCCCTCGTGATAGGAACTACTTTATTCTCTATTCGAGATGTCTGGGGCTATGCTTATAGCAACGAAGGAGAGGTAGTTGACTATGTTTCAAGCATGATGCCGCTACTTGCATGCTCAACCATTTTGGATGGCATCCAAGGTGTTCTATCAGGTATTGCTAGAGGATGTGGATGGCAAAAGTTAGGTGCCTATGCAAATCTTGGGGCATACTATGTGGTTGGAATTCCAATGGCGGTAACTTTGGCCTTTCTACTCCATCTTGGTGGCAGGGGACTTTGGATTGGAATTCTTTGTGGGCTTTGTGCACAAGCAATTCTACTGTTCATAATAACGTTGTGTACGGATTGGGGAAAGCAGGCAAAAGAGGCAAGAGAAAGAGTATATGCATCATTATTGCCCACTGTTACTGGTAATATAATAAAGGACGAGCAATAA___GGTTTTCAGCCTGGATCGTTGGAGTCAATTTTCAATCCCTCATAACAGAAGCGGAAACTCATGGGTGCTTTCACATATGCTAAAATGTGCCTTGCCTGTTTCACCTCTGCAAAAGAAAAGGCTTCTGTGAATGTTTTATTCAACCAGATATCACGGTGGATGAAAGCAAAATCCCGTTGTTAAATGGAGATAAATTTAGGAGATTGGCATCCTTGCAAATAGAGTAGAAAATCCTTTTGTGGATGGATAAGGAGAATGATTCTTTGATTCACTCCTCACACCCTCCTATATTTATATGCCCTTGTTACTCACAGTCCTTACAAAGAATGATATATATTTTTTCTATGGAAACAGAAACATTTTGAAGTATGATATAATGCTGTGGGGTTCCTGAAATGGAAACCTTTTGAAGCACAATGTAAGTTTCTCCAATGAAACCTTTTGAAGCACAATGTAAGTTTCTCCAATAAATATATTAATGTTTCCTGGACC

Fln Alignment:

Contig121___AVWEEVKKLYWIAGPMIGVNLLQYCMQVISVMLVGHLGELPLSSAAIATSFAGVTGFSVLMGMGSALETLCGQAYGAKQYHLLGIQMQRAIFALFCVSIPLAVIWAYMGHILAALGQDPLISFEAGKFARWMIPSLFAYAVLQPLVKFLQSQGIVFPMMLSSAITLSLHVPICWVLVFKVGLGNKGAALANSISNWLNVALLSLYVIFSPACQKTRTSFSREALSDINSFLKLAIPSAVMVCLEYWSFEMLILLSGLLPKPQLEMSVLSICLSTASLAYMIPFGLGAAVSTRVSNELGAGHPRAAQFSVHVALYMSAMEALVIGTTLFSIRDVWGYAYSNEGEVVDYVSSMMPLLACSTILDGIQGVLSGIARGCGWQKLGAYANLGAYYVVGIPMAVTLAFLLHLGGRGLWIGILCGLCAQAILLFIITLCTDWGKQAKEARERV
D5ADQ8_____________AVFLESKLLWSLALPAIVVYMVNYIMSMATQIFCGHLGNLELAAASLGNTGIQVFAYGLMLGMGSAVETLCGQAYGAKTYGMLGIYLQRSTILLMVTGIPLTIIYAFSKPLLVLLGESETIAAAAAIFVYGLIPQIFAYAANFPIQKFLQAQSIVAPSAYISFCTIFVHVFLTWLAVYKLGFGIFGAALVLSLSWWIVVIAQFIYILKSPRCKYTWTGFSLQAFHGLPSFLKLSAASAVMLCLETWYFQILVLLAGLLDNPEIALDSLSICMSVLGWLFMISVGFNAAASVRVSNELGAGNPRAASFSVKIVTLMSFIISVIFGIVIILLRNVMSYAFTEGTEVADAVAELSPFLAFSIILNGVQPVLSGVAVGCGWQALVAYINVGCYYVIGIPLGCLLGFKFDFGVKGIWSGMLGGTCLQTIILLIITYRTNWNKEVEKASHRL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1989	25	25	50		0.995533
1991		50	25	25	0.995533
1992		25	25	50	0.995533
1994	25			75	0.996473
1995	25	50	25		0.995533
1997		75		25	0.996473
1999		75		25	0.996473
2000	50			50	1.0
2006			25	75	0.996473
2013	75	25			0.996473
2014	25			75	0.996473
2194	28		71		1.0
2195	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain