SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106

Length: 1490 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene106

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor TF2 [Gossypium hirsutum]	-	-	2.0e-35	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Transcription factor GT-3b	-	-	1.158e-08	-

Source	Gene names
Sma3	At2g38250; At5g01380; B0403H10-OSIGBa0105A11.17; GSVIVT00007624001; GSVIVT00038882001; GT-3a; GT1L; GT3A; GT3B; OJ1218_D07.7; OSJNBa0041A02.12; Os02g0702100; Os04g0602300; OsI_08599; OsI_17269; OsJ_08061; OsJ_16045; PHYPADRAFT_133013; PHYPADRAFT_149607; P

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR014778	-	-
Sma3	Myb-like domain	IPR017877	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G01380.1	Homeodomain-like superfamily protein chr5:155784-157451 REVERSE LENGTH=323	2.0e-30	58%
RefSeq	Arabidopsis thaliana	NP_195758.1	transcription factor [Arabidopsis thaliana]	3.0e-30	58%
RefSeq	Populus trichocarpa	XP_002326589.1	predicted protein [Populus trichocarpa]	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2A3

Fln msg: Separated hits, possible frame ERROR between 821 and 866, your sequence is shorter than subject: 270 - 292

Fln protein: MQGDNMTTVAALPLQSPSMEAEMNQAQLKRKDDRIPQWGHQETREFIAIRAELEKDFTQTKRNKTLWEIIAGKMKAKGYRRSAEQCKCKWKNLVNRYKGKETSEPDNGRQCPFFEELDAIFKERERNMDRLLLESKAGMKPKEKVKRFKRLLGEKSSDDSSEDEEEEEDDSEDEKTIKRKKSKADKERQRVTADKYRENxxxxxxxxxxxxxxxxIAMEKLEKERVMKEQAWCEREDQRQAREEARAERRDELFAALVNKLTQEERSHI*

Protein Length: 271

Fln nts: TGATTTGATATGAGCATCCACTGACCCTGACACCTGCGTCCATTATTAAATTGTCGACCAATCTACAGAGATTTAAATCTGATATTTGCAACGTTAATTGTCTGTAATTGATATTAATCCATTACAGAGCTTTGCGTGGAATCTTGTGTTGTGTTAAAGAAGAGGATTCAAACACGGGAGTATTGTGCTTTTCTTAAAGCAGGACGAGTAGCGGAGGTGAA_-_ATGCAAGGGGACAACATGACTACAGTGGCAGCATTGCCACTGCAGTCACCTTCAATGGAGGCAGAGATGAATCAAGCTCAATTGAAGAGGAAAGATGACAGAATCCCTCAATGGGGTCATCAGGAGACGAGGGAATTCATCGCAATCAGGGCAGAGCTGGAGAAGGATTTCACACAGACAAAAAGAAATAAGACCCTGTGGGAGATTATCGCGGGGAAAATGAAGGCCAAGGGATACAGAAGAAGCGCAGAGCAGTGTAAATGCAAGTGGAAAAATCTCGTTAACCGTTACAAGGGCAAAGAAACCTCAGAGCCGGATAATGGAAGACAATGCCCTTTCTTTGAAGAACTGGATGCGATATTTAAGGAACGGGAGAGAAATATGGACAGATTGCTATTAGAGTCAAAGGCTGGTATGAAACCCAAAGAAAAAGTGAAGAGATTCAAACGCTTGTTGGGGGAAAAATCATCGGATGATTCTTCAGAAGACGAGGAAGAGGAAGAGGATGATAGTGAAGATGAGAAGACTATTAAGAGAAAGAAAAGTAAGGCCGATAAAGAAAGACAGAGAGTTACGGCTGATAAATACCGTGAAAATAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATAGCAATGGAGAAATTGGAAAAGGAACGGGTGATGAAAGAGCAGGCTTGGTGCGAGAGGGAAGATCAAAGACAAGCACGAGAAGAAGCTCGGGCTGAGAGAAGAGATGAGCTCTTTGCTGCTTTAGTTAACAAACTCACTCAAGAAGAAAGGTCTCACATCTAA___ACATGGTAATTGGCGGAATATCCTCCAACGTTTTGTTTCAAAAGTTGTTTTGGAATATGAACAGAAAATGTAAGGATTGCCTACTGATATTTCACATGCAAGGAGTGCAATTAGATTATTGATTTTAGTTTTGCCTCGACAAAAAGTCAAGGGATAGATGGATGCAGATGGATGTAATTACTTGAACATGATGATTTAGAAAACTCTGGATTGAAGTCAGTTGCAGCTGGATTCAGTGGTGTATTCATGTAGAGAAATATTTAAATATGGTGCTGATCTTTTCATAGAACGTGTGGAAATTCAAAGGCTCTTATCCAAAAGAGTCTGTTTATTGGATTGGTGATTACCTGTTCATTCATGCTTTAAACAAATTGGGTGAATATATTATTGTTGCTTCCAGGTCCTCTTGTTGAAAATTAAACATGATAATATCAGAGTAGCCTGACATATGCCTACCTCC

Fln Alignment:

Contig106___MQGDNMTTVAALPLQSPSMEAEMNQAQLKRKDDRIPQWGHQETREFIAIRAELEKDFTQTKRNKTLWEIIAGKMKAKGYRRSAEQCKCKWKNLVNRYKGKETSEPDNGRQCPFFEELDAIFKERERNMDRLLLESKAGMKPKEKVKRFKRLLGEKXXXXXXXXXXXXXXXXXXXKTIKRKKSKADKERQRVTADKYRENSxxxxxxxxxxxxxxxIAMEKLEKERVMKEQAWCXXXXXXXXXXXXXXXXXXXLFAALVNKLTQEERSHI
A9P2A3_____________MQGDNMTAMAALPLQSPSMDAEMNQSQLKRKDDRIPQWGHQETREFIAIRAELEKDFTQTKRNKTLWEIIAGKMKSKGYRRSAEQCKCKWKNLVNRYKGKETSEPDNGRQCPFFEELDAIFKERERNMDRLLLESKAGMKPKEKVRRFKRLLGEKSSDDYSEDEEDEEDDSEEEKIIKRKKSKADKERQRVTADKYRANSxxxxxxxxxxxxxxxIAMEKLEKERVMKEQAWREREDQRRAREEVRAERRDELFAALINKLTQEERSHI

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
376	33		66		1.0
383	33		66		0.997452
423		20	80		0.995493
431		60		40	1.0
536			50	50	1.0
551	66		33		0.997452
975	33		33	33	0.997753
978	33			66	1.0
980		33		66	0.997452
981	33			66	0.997452
983	33		66		0.997452
986			66	33	0.997452
989	33		33	33	0.997753
991	33	33			0.997753
992		33	66		1.0
993	33			66	0.997452
994		33		66	1.0
995	33		33	33	0.997753
996	33	66			1.0
997	33	66			0.997452
998	66	33			0.997452
1000	66			33	0.997452
1004	66			33	0.997452
1005		66		33	0.997452
1006			33	66	0.997452
1007	33	66			0.997452
1010			66	33	0.997452
1013		33	66		0.997452
1014	66			33	0.997452
1015	66	33			0.997452
1250			75	25	1.0
1265	57	42			1.0
1307	25			75	0.996473
1362	33			66	0.997452
1393		33		66	0.997452
1406		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain