SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79

Length: 2456 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene79
CACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGAGTAAAACAAAGGGTATCATATCAGCTCCTGTTGTTGGGTGGTCCATTAAAAGGGCCTCAAGCTTCTATGGAGTTTTAGGTAGCAAAGACAGGGCTTCTCTGGAGGCCCCATCGGTTAGAATAGAATTGTATGAAATTGGATCCAGCAGTGTGATTGTTTTTTTCTATTTGAGACCCCTTTATTTGTTTGGCCCAGTACCTAGGCTTTTTAAGGTCCGATCCAGGAGAAGCTCTCTGTCATGCATTCGGGATCTTTTGAAGTTGTCGTTTCATTGTGTTTTTCTGCTTTGTTGCTCTACAATAATACCATTTCATCCATTGTTTTGCTGAGCTAAATACCATCTATGAACGTTTGAAAAGCTCTTATCTGAGCATAAGGGAGGCACTACAATGAACTGGGAGGAACCTAGCTGGAGATTGTGGCTGAATTCCCCATTAGTTGAGATTGTTTCAGTACCTCGATTCTTTGTTTTAGGGCTAATGGCAGAGGATTCTATAATGGGTGCCTTGCTGATCAGGTTTTACCTTTGATTTGTGTGTTGAGAATTCTTTGGTAGGCGCAAAGATCTGACTGGTTTTTTAATATGGGTGCCAAAACCCTAATGGATGCACAATGTATGTCTATCTTATTGCTCAAATCTAATAAATATAGAATGCGTAGTTGAAATTCTTGCTGTGTAGATTCAGACAAGCAGGTAGATCTGGAAAATGCCTGAACCATTTCCTTCTTGTTTTGGAGAATCCGGAGGTGCCCACTTGACAGATAAGTCTTCTTCTTCTACTGGCAGCAGAATGACACAGAACTTGATAACTTGCCTCTATCAGACCACACTAGCAGAAATCTGCAAATTTGTGACCATAACATGGTGCAAGAATCTAATGGGCCATGGTCTCAGTGTCCATGTCAATGATTCAAGGTGCCATTATATGTGCAAGGTTGAGATGAAGCCATGGTCCTTCTGGAAGAAGCACGGATCCAAGAGCTTTGATGTCAAGGGGAAGAAGATGGAAGTGTTCTGGGATGTGAGCAATGCTAAATATGTATGTGGGCCTGAACCACAGGAAGGCTTTTACGTGGCCCTTGTATGTGAAAAGGAGATAGTACTGTTGTTGGGAGATATGCAGGAGGAGGCCTACAAGAAAACCCATGCAAGGAAGGCATTCACTGAGCCCACATTGCTGTCTAGAAGAGAGCATGTGTTTGGGAAGAGATATTACACAACAAAGGCACAGTTTGGTGAAAGTGGCAGGACTCATGACATCGTGATTGAATGCCACACAGGGGGATCCAAGGAACCAAGATTGGATGTGAGAGTTGACAAGAAGGTGGTGTTGCAGGTCAAGCACCTGATGTGGAAGTTCAGGGGCAATCAGACAATTGAGGTTGATGGAGCCTCAATACAAATCTTCTGGGATGTGCACAATTGGCTCTTCAATCCCACCCATGGCCATGCTGTCTTCATGTTCCAGACTTCAGGCGATCGCATATCAAACAGTGCTAGAAGAACTGATAATGCTGCTGCTGTCCCCTGCCAACCGCTGCCACCATCTGTCTTGCAGTGGCCTCCTCCATCTGTATTCAATATCAGAGGCCATGATAAGACCTTCTTCAAGACCAGCTCCTCTTCCTCTTCCTCTTCAAATTCAAGCTCTTCAGTATTGCAATGGGCAAGCATGGAGACTGAAACTGGTAGCCCATCTGGCTTCTCATTGTTGCTGTATGCATGGAAGAGTGAATAGGGAACTCATTAGTATTACTATTTCAGTCCAAGTACTAGTAGTAGCATTACCAGTATTTCTTTCTAGTTATTGAGTCATGTACATATAAGGGAGAGAATAGCACTGGCTAGGCTGCATTCTGTGTTTTTATTTCAATTCTGACATGTATATGATTGATTAATCGAGGCCTCATTATATGGGAGCTTCTGAGACACGAATAAATCCATTCTCCAGATTTCTTTCAGGACTAGTACTGGTGCTCCTGCCACTGCTTAAGCTAATGCCAGCTAAAGGCCAATAAATGACTTCATCTGATTAAATGCCCTATTTTACAAATGAAACACACCCTCTATTGAAGTTGGGTACAAAAGTGGAGTTAGCCTCTTCATGCTTTTTGAGCTGGCCAAGCCCAGAGCTGAAACCTCTATCTCCATGTTTATCAGGCACCTACATTCTTACCATCGCCTGACAGCCAGTGGCCCATACAGACCTAATGCAAGTCCTGAGAGGTCCACACAGACCTAATGCAGCAAACATGGCATAGTTTTCCACAAGACCAAACCCACTCTGTTCATGGTGGCGAGCAATATTTATGTTTTGTAATGCATTACAAAGACCAAGATTCTGAAATCTTACTACCGGCGTGCATTGTGTTATTTGGATTCTCCATAACTTGTGTGCCCTCTGCTATTTAGATG

Ace file of the UniGene sp_v3.0_unigene79 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF868 domain containing protein	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%

Source	Gene names
Sma3	At2g04220; At3g04860; At5g28150; GSVIVT00015969001; GSVIVT00019979001; GSVIVT00021666001; GSVIVT00022079001; GSVIVT00023730001; GSVIVT00029057001; GSVIVT00030761001; GSVIVT00031134001; GSVIVT00032713001; LOC_Os03g59200; OJ1121_A05.24; OSJNBa0059E14.19; Os

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L24e-related	IPR000988	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Protein of unknown function DUF868, plant	IPR008586	-	-
Sma3	TRASH	IPR011017	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G28150.1	Plant protein of unknown function (DUF868) chr5:10135826-10136695 FORWARD LENGTH=289	51%
RefSeq	Arabidopsis thaliana	NP_198167.1	uncharacterized protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002319062.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNS3

Fln msg: your sequence is longer than subject: 344 - 270

Fln protein: MPEPFPSCFGESGGAHLTDKSSSSTGSRMTQNLITCLYQTTLAEICKFVTITWCKNLMGHGLSVHVNDSRCHYMCKVEMKPWSFWKKHGSKSFDVKGKKMEVFWDVSNAKYVCGPEPQEGFYVALVCEKEIVLLLGDMQEEAYKKTHARKAFTEPTLLSRREHVFGKRYYTTKAQFGESGRTHDIVIECHTGGSKEPRLDVRVDKKVVLQVKHLMWKFRGNQTIEVDGASIQIFWDVHNWLFNPTHGHAVFMFQTSGDRISNSARRTDNAAAVPCQPLPPSVLQWPPPSVFNIRGHDKTFFKTSSSSSSSSNSSSSVLQWASMETETGSPSGFSLLLYAWKSE*

Protein Length: 345

Fln nts: CACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGAGTAAAACAAAGGGTATCATATCAGCTCCTGTTGTTGGGTGGTCCATTAAAAGGGCCTCAAGCTTCTATGGAGTTTTAGGTAGCAAAGACAGGGCTTCTCTGGAGGCCCCATCGGTTAGAATAGAATTGTATGAAATTGGATCCAGCAGTGTGATTGTTTTTTTCTATTTGAGACCCCTTTATTTGTTTGGCCCAGTACCTAGGCTTTTTAAGGTCCGATCCAGGAGAAGCTCTCTGTCATGCATTCGGGATCTTTTGAAGTTGTCGTTTCATTGTGTTTTTCTGCTTTGTTGCTCTACAATAATACCATTTCATCCATTGTTTTGCTGAGCTAAATACCATCTATGAACGTTTGAAAAGCTCTTATCTGAGCATAAGGGAGGCACTACAATGAACTGGGAGGAACCTAGCTGGAGATTGTGGCTGAATTCCCCATTAGTTGAGATTGTTTCAGTACCTCGATTCTTTGTTTTAGGGCTAATGGCAGAGGATTCTATAATGGGTGCCTTGCTGATCAGGTTTTACCTTTGATTTGTGTGTTGAGAATTCTTTGGTAGGCGCAAAGATCTGACTGGTTTTTTAATATGGGTGCCAAAACCCTAATGGATGCACAATGTATGTCTATCTTATTGCTCAAATCTAATAAATATAGAATGCGTAGTTGAAATTCTTGCTGTGTAGATTCAGACAAGCAGGTAGATCTGGAAA_-_ATGCCTGAACCATTTCCTTCTTGTTTTGGAGAATCCGGAGGTGCCCACTTGACAGATAAGTCTTCTTCTTCTACTGGCAGCAGAATGACACAGAACTTGATAACTTGCCTCTATCAGACCACACTAGCAGAAATCTGCAAATTTGTGACCATAACATGGTGCAAGAATCTAATGGGCCATGGTCTCAGTGTCCATGTCAATGATTCAAGGTGCCATTATATGTGCAAGGTTGAGATGAAGCCATGGTCCTTCTGGAAGAAGCACGGATCCAAGAGCTTTGATGTCAAGGGGAAGAAGATGGAAGTGTTCTGGGATGTGAGCAATGCTAAATATGTATGTGGGCCTGAACCACAGGAAGGCTTTTACGTGGCCCTTGTATGTGAAAAGGAGATAGTACTGTTGTTGGGAGATATGCAGGAGGAGGCCTACAAGAAAACCCATGCAAGGAAGGCATTCACTGAGCCCACATTGCTGTCTAGAAGAGAGCATGTGTTTGGGAAGAGATATTACACAACAAAGGCACAGTTTGGTGAAAGTGGCAGGACTCATGACATCGTGATTGAATGCCACACAGGGGGATCCAAGGAACCAAGATTGGATGTGAGAGTTGACAAGAAGGTGGTGTTGCAGGTCAAGCACCTGATGTGGAAGTTCAGGGGCAATCAGACAATTGAGGTTGATGGAGCCTCAATACAAATCTTCTGGGATGTGCACAATTGGCTCTTCAATCCCACCCATGGCCATGCTGTCTTCATGTTCCAGACTTCAGGCGATCGCATATCAAACAGTGCTAGAAGAACTGATAATGCTGCTGCTGTCCCCTGCCAACCGCTGCCACCATCTGTCTTGCAGTGGCCTCCTCCATCTGTATTCAATATCAGAGGCCATGATAAGACCTTCTTCAAGACCAGCTCCTCTTCCTCTTCCTCTTCAAATTCAAGCTCTTCAGTATTGCAATGGGCAAGCATGGAGACTGAAACTGGTAGCCCATCTGGCTTCTCATTGTTGCTGTATGCATGGAAGAGTGAATAG___GGAACTCATTAGTATTACTATTTCAGTCCAAGTACTAGTAGTAGCATTACCAGTATTTCTTTCTAGTTATTGAGTCATGTACATATAAGGGAGAGAATAGCACTGGCTAGGCTGCATTCTGTGTTTTTATTTCAATTCTGACATGTATATGATTGATTAATCGAGGCCTCATTATATGGGAGCTTCTGAGACACGAATAAATCCATTCTCCAGATTTCTTTCAGGACTAGTACTGGTGCTCCTGCCACTGCTTAAGCTAATGCCAGCTAAAGGCCAATAAATGACTTCATCTGATTAAATGCCCTATTTTACAAATGAAACACACCCTCTATTGAAGTTGGGTACAAAAGTGGAGTTAGCCTCTTCATGCTTTTTGAGCTGGCCAAGCCCAGAGCTGAAACCTCTATCTCCATGTTTATCAGGCACCTACATTCTTACCATCGCCTGACAGCCAGTGGCCCATACAGACCTAATGCAAGTCCTGAGAGGTCCACACAGACCTAATGCAGCAAACATGGCATAGTTTTCCACAAGACCAAACCCACTCTGTTCATGGTGGCGAGCAATATTTATGTTTTGTAATGCATTACAAAGACCAAGATTCTGAAATCTTACTACCGGCGTGCATTGTGTTATTTGGATTCTCCATAACTTGTGTGCCCTCTGCTATTTAGATG

Fln Alignment:

Contig79___MTQNLITCLYQTTLAEICKFVTITWCKNLMGHGLSVHVNDSRCHYMCKVEMKPWSFWKKHGSKSFDVKGKKMEVFWDVSNAKYVCGPEPQEGFYVALVCEKEIVLLLGDMQEEAYKKTHARKAFTEPTLLSRREHVFGKRYYTTKAQFGESGRTHDIVIECHTGGSKEPRLDVRVDKKVVLQVKHLMWKFRGNQTIEVDGASIQIFWDVHNWLFNPTHGHAVFMFQT
B8LNS3____________MMQNMVTCLYLTTLSGQTRLITVTWCKNLMGQGLSVNVDDPSYQCLCRVDMKSWLFWKKKGSKRFELGTTKVDVFWDLSSARYGSAPEPLEGYFVAVVSNEEVALLLGDMCKEAFKKTHAKPP-AETVLISRKEHVFGKNCYTTKAQFCNSGRIHDIVIECQTGGPREPKLCVRIDKQLVVQVKHLIWKFRGNQTISVDGLPIEMFWDVHDWLFNPSLGHAVFMFKT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
118	25		75		0.996473
225			75	25	0.996473

SSRs (tot: 2)

Start position	End position	Sequence	Length
778	797	GAAGAG GAAGAG GAAGAG GA	20
1638	1649	AGA AGA AGA AGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain