SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene72

Length: 2622 nt

UniGene Fasta

>sp_v3.0_unigene72
GAGGATCTTGCGCGCAAAGAGGGACACAGGCCAAAAGTTTGAGAGTTTGGACTGAATAATTGATTTATTACAGATGGATACGAAAATAGGTGATGTGAACTCGGAATGGCCTGCAAACAATAACTTGGGGTGCTCGCCCTCCAACAAATCAGTGGCCTGCCCATCGCCGAATGGTCACGCAGGAGCAGTAGCTCCGAAGAATTCCTCCTCCACTTTGGGCGGCCATTTGGCGCGGAGGCTCGTTGAAATTGGCGTCACGGACGTATTCTCTGTTCCTGGGGACTTCAATCTCACCTTGCTGGACCATCTGCTAGCAGAGCCTGGTCTCAATCTCGTGGGCTGCTGCAATGAGCTCAACGCTGGCTACGCGGCCGATGGTTACGCGCGGTCCAGAGGCGTGGGGGCTTGTGTGGTTACGTTCACAGTCGGAGGGCTCAGCATCATCAATGCGATCGCGGGGGCTTACAGCGAGAATCTGCCCGTCATCTGTATCGTTGGGGGGCCTAATTCTAATGACTATGGGACCAACCGTATCCTGCATCATACCATTGGCGTGCCAGATTTTAGCCAGGAGTATCGCTGCTTCCAGACGGTCACATGCGCTCAGGCTATTGTGAATCACTTGGATGATGCCCACGAGCTCATTGACTATGCGATTTCAACGGCACTGCTAGAGAGCAAACCTGTGTATATCAGCGTCAGTTGTAATCTTCCTACCATTCAACACCCTTCTTTCAGCCGGCAACCCGTTCCATATAGTCTATCACCCAGGCTAAGCAATCCCAAAAGTTTGGAAGCGGCAGTGAACATGACAGCAGAATTTCTAAATGCAGCAGTGAAGCCAGTGATGGTAGGTGGGCCAAAGATGAGAGTTGGTAAGGCAAAAAGTGCATTTGTGGAATTAGCAGATGCATCGGGTTATCCCGTGGCTGTAATGCCCTCTGCTAAGGGACAGGTTCCAGAGACTCATCCACATTTCATAGGCACTTACTGGGGTGCAACAAGTACTGCATTCTGTTCTGAGATAGTTGAGTCTGCAGATGCATATTTATTTGCAGGGCCTATTTTTAATGACTATAGTTCGGTGGGATATTCATTGCTTTTGAAGAAGGAGAAAGCCGTAATTGTGCAGCCTAACAGGGTGACTGTGGGAAATGGGCCTACTTTTGGGTGTGTATTGATGAAAGATTTCTTAGAAGCCCTTGCCAAGAAAGTGAAGCACAACCCAACATGTTTGGAAAATTATCGGCGTATTTTTGTACCTGAAGGTGTTCCCTTGAAAAGTGAACAATATGATCCCTTAAGGGTCAATGTGCTATTCAAACACATTCAGAGCATGCTATCAAATGAAACTGCTGTAATTGCTGAAACCGGTGACTCTTGGTTCAATTGCCAGAAGCTTAAATTGCCAGAAAAGTGTGGGTATGAGTTCCAAATGCAGTATGGATCAATTGGCTGGTCTGTGGGAGCAACACTGGGATATGCGCAAGCAACACCAGACAAGCGTGTGATTGCATGCATTGGTGATGGAAGCTTCCAGGTCACAGCCCAGGATGTGTCTACCATGATTAGACAAGGCCAGAATGCTATCATTTTTCTGATTAATAATGGAGGATACACAATAGAGGTCGAAATTCATGATGGGCCATACAATGTCATTAAGAATTGGAACTACACCGGTTTAGTAGATGCCATTCATAACGGGGAAGGGAAATGCTGGACTGTCAAGGTTAAAACGGAAGAAGGGCTTGAAGAGGCTATTAAAACTGCCCGAGGACCCAAAAAGGATTGTTTATGCTTTATTGAAGTTATTGTACACAAGGATGACACAAGCAAAGAGTTGCTTGAGTGGGGGTCCAGAGTCTCGGCAGCAAACAGCAGGCCGCCAAATCCTCAGTAGGGAGGTTTTGTAAAGATGAGCAATTGGAAATAGCTTCTGCGGCTCATGTTTGGGTTTTCATTGCTTTTCTGGTCATCTTGAAGGATTATATGTTCTGATCACCCAGATATCTGAATTTGATATTCCCTAGATATGAGGTCGAACTGTACCTCTCACTGAAGTGCATAGTGTACTGCTACTGCTATTTTATTGTGTGTGGGTAGCATGTTTAGTGTCAAACGTTGCATGAGCAGTCTGTCAGCCTTTTTTTGGGAGCGTGAATAAAATAAAAAATATACCTGGCTACAGTTTCCGTTGAGATATTGCCAATCACGTGATTTGCATAACTAGCAGTGTCCATTTGTACAGGGAATGTCTAAAGAAATATCTAGATTGCATTGTTTTGTTTTAAATACGGAACTTTTTCCCAATTGCATTCCCAAAAACAAATTGCGGCACTGCTGTTTTTACGTTTGTAGGTTCTTCATAAAAGAGAAAAAGCCGTGGTGGTGGGCAATCATTTGCCCCTACTGAGAAAAATGAAAAACGTCTTTGTTGTTGTGTATGTTTCTTTCTTATGGTTGTTCAATTTTTCTGAACTTCCTGTTTATATTGAACATCTTTGTGTTGTAAGTTCTTTTCCATTAGCTGCATGTTGCTCTGGAGGGTTAAGAACTGTTATCAGAGCATTTTGTGGTTCCAAACTGTTGTTTTGCCAACTCATCAAAGAAACTTTGTTTAGT

Ace file of the UniGene sp_v3.0_unigene72

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate decarboxylase 1 n=1 Tax=Lotus corniculatus RepID=Q84V95_LOTCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Pyruvate decarboxylase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pyruvate decarboxylase.	EC:4.1.1.1	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT4g33070; At4g33070; At5g01320; At5g01330; At5g54960; CHLREDRAFT_127786; GSVIVT00001355001; GSVIVT00003899001; GSVIVT00024065001; GSVIVT00027362001; GSVIVT00035905001; GSVIVT00035906001; GSVIVT00035907001; GSVIVT00036421001; H0515C11.12; LOC_Os10g33980;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	pyruvate decarboxylase activity	GO:0004737	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	carboxy-lyase activity	GO:0016831	Molecular Function	-
Sma3	thiamine pyrophosphate binding	GO:0030976	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	SRA-YDG	IPR003105	-	-
Sma3	Pre-SET domain	IPR007728	-	-
Sma3	Thiamine pyrophosphate enzyme, C-terminal TPP-binding	IPR011766	-	-
Sma3	Thiamine pyrophosphate enzyme, central domain	IPR012000	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	Pyruvate decarboxylase/indolepyruvate decarboxylase	IPR012110	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33070.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein chr4:15952519-15954676 REVERSE LENGTH=607	79%
RefSeq	Arabidopsis thaliana	NP_195033.1	pyruvate decarboxylase [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002322997.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQQ0

Fln msg: your sequence is longer than subject: 609 - 409

Fln protein: MDTKIGDVNSEWPANNNLGCSPSNKSVACPSPNGHAGAVAPKNSSSTLGGHLARRLVEIGVTDVFSVPGDFNLTLLDHLLAEPGLNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSIINAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGVPDFSQEYRCFQTVTCAQAIVNHLDDAHELIDYAISTALLESKPVYISVSCNLPTIQHPSFSRQPVPYSLSPRLSNPKSLEAAVNMTAEFLNAAVKPVMVGGPKMRVGKAKSAFVELADASGYPVAVMPSAKGQVPETHPHFIGTYWGATSTAFCSEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAVIVQPNRVTVGNGPTFGCVLMKDFLEALAKKVKHNPTCLENYRRIFVPEGVPLKSEQYDPLRVNVLFKHIQSMLSNETAVIAETGDSWFNCQKLKLPEKCGYEFQMQYGSIGWSVGATLGYAQATPDKRVIACIGDGSFQVTAQDVSTMIRQGQNAIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTVKVKTEEGLEEAIKTARGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ*

Protein Length: 610

Fln nts: GAGGATCTTGCGCGCAAAGAGGGACACAGGCCAAAAGTTTGAGAGTTTGGACTGAATAATTGATTTATTACAG_-_ATGGATACGAAAATAGGTGATGTGAACTCGGAATGGCCTGCAAACAATAACTTGGGGTGCTCGCCCTCCAACAAATCAGTGGCCTGCCCATCGCCGAATGGTCACGCAGGAGCAGTAGCTCCGAAGAATTCCTCCTCCACTTTGGGCGGCCATTTGGCGCGGAGGCTCGTTGAAATTGGCGTCACGGACGTATTCTCTGTTCCTGGGGACTTCAATCTCACCTTGCTGGACCATCTGCTAGCAGAGCCTGGTCTCAATCTCGTGGGCTGCTGCAATGAGCTCAACGCTGGCTACGCGGCCGATGGTTACGCGCGGTCCAGAGGCGTGGGGGCTTGTGTGGTTACGTTCACAGTCGGAGGGCTCAGCATCATCAATGCGATCGCGGGGGCTTACAGCGAGAATCTGCCCGTCATCTGTATCGTTGGGGGGCCTAATTCTAATGACTATGGGACCAACCGTATCCTGCATCATACCATTGGCGTGCCAGATTTTAGCCAGGAGTATCGCTGCTTCCAGACGGTCACATGCGCTCAGGCTATTGTGAATCACTTGGATGATGCCCACGAGCTCATTGACTATGCGATTTCAACGGCACTGCTAGAGAGCAAACCTGTGTATATCAGCGTCAGTTGTAATCTTCCTACCATTCAACACCCTTCTTTCAGCCGGCAACCCGTTCCATATAGTCTATCACCCAGGCTAAGCAATCCCAAAAGTTTGGAAGCGGCAGTGAACATGACAGCAGAATTTCTAAATGCAGCAGTGAAGCCAGTGATGGTAGGTGGGCCAAAGATGAGAGTTGGTAAGGCAAAAAGTGCATTTGTGGAATTAGCAGATGCATCGGGTTATCCCGTGGCTGTAATGCCCTCTGCTAAGGGACAGGTTCCAGAGACTCATCCACATTTCATAGGCACTTACTGGGGTGCAACAAGTACTGCATTCTGTTCTGAGATAGTTGAGTCTGCAGATGCATATTTATTTGCAGGGCCTATTTTTAATGACTATAGTTCGGTGGGATATTCATTGCTTTTGAAGAAGGAGAAAGCCGTAATTGTGCAGCCTAACAGGGTGACTGTGGGAAATGGGCCTACTTTTGGGTGTGTATTGATGAAAGATTTCTTAGAAGCCCTTGCCAAGAAAGTGAAGCACAACCCAACATGTTTGGAAAATTATCGGCGTATTTTTGTACCTGAAGGTGTTCCCTTGAAAAGTGAACAATATGATCCCTTAAGGGTCAATGTGCTATTCAAACACATTCAGAGCATGCTATCAAATGAAACTGCTGTAATTGCTGAAACCGGTGACTCTTGGTTCAATTGCCAGAAGCTTAAATTGCCAGAAAAGTGTGGGTATGAGTTCCAAATGCAGTATGGATCAATTGGCTGGTCTGTGGGAGCAACACTGGGATATGCGCAAGCAACACCAGACAAGCGTGTGATTGCATGCATTGGTGATGGAAGCTTCCAGGTCACAGCCCAGGATGTGTCTACCATGATTAGACAAGGCCAGAATGCTATCATTTTTCTGATTAATAATGGAGGATACACAATAGAGGTCGAAATTCATGATGGGCCATACAATGTCATTAAGAATTGGAACTACACCGGTTTAGTAGATGCCATTCATAACGGGGAAGGGAAATGCTGGACTGTCAAGGTTAAAACGGAAGAAGGGCTTGAAGAGGCTATTAAAACTGCCCGAGGACCCAAAAAGGATTGTTTATGCTTTATTGAAGTTATTGTACACAAGGATGACACAAGCAAAGAGTTGCTTGAGTGGGGGTCCAGAGTCTCGGCAGCAAACAGCAGGCCGCCAAATCCTCAGTAG___GGAGGTTTTGTAAAGATGAGCAATTGGAAATAGCTTCTGCGGCTCATGTTTGGGTTTTCATTGCTTTTCTGGTCATCTTGAAGGATTATATGTTCTGATCACCCAGATATCTGAATTTGATATTCCCTAGATATGAGGTCGAACTGTACCTCTCACTGAAGTGCATAGTGTACTGCTACTGCTATTTTATTGTGTGTGGGTAGCATGTTTAGTGTCAAACGTTGCATGAGCAGTCTGTCAGCCTTTTTTTGGGAGCGTGAATAAAATAAAAAATATACCTGGCTACAGTTTCCGTTGAGATATTGCCAATCACGTGATTTGCATAACTAGCAGTGTCCATTTGTACAGGGAATGTCTAAAGAAATATCTAGATTGCATTGTTTTGTTTTAAATACGGAACTTTTTCCCAATTGCATTCCCAAAAACAAATTGCGGCACTGCTGTTTTTACGTTTGTAGGTTCTTCATAAAAGAGAAAAAGCCGTGGTGGTGGGCAATCATTTGCCCCTACTGAGAAAAATGAAAAACGTCTTTGTTGTTGTGTATGTTTCTTTCTTATGGTTGTTCAATTTTTCTGAACTTCCTGTTTATATTGAACATCTTTGTGTTGTAAGTTCTTTTCCATTAGCTGCATGTTGCTCTGGAGGGTTAAGAACTGTTATCAGAGCATTTTGTGGTTCCAAACTGTTGTTTTGCCAACTCATCAAAGAAACTTTGTTTAGT

Fln Alignment:

Contig72___LESKPVYISVSCNLPTIQHPSFSRQPVPYSLSPRLSNPKSLEAAVNMTAEFLNAAVKPVMVGGPKMRVGKAKSAFVELADASGYPVAVMPSAKGQVPETHPHFIGTYWGATSTAFCSEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAVIVQPNRVTVGNGPTFGCVLMKDFLEALAKKVKHNPTCLENYRRIFVPEGVPLKSEQYDPLRVNVLFKHIQSMLSNETAVIAETGDSWFNCQKLKLPEKCGYEFQMQYGSIGWSVGATLGYAQATPDKRVIACIGDGSFQVTAQDVSTMIRQGQNAIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTVKVKTEEGLEEAIKTARGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ
B8LQQ0____________MESKPVYISISCNLAAVQHPTFSRQPVPYSLSPRLSNPKSLEAAVNMTAEFLNAAVKPVMVGGPKMRVAKAKNAFVELADASGYPVAVMPSAKGQVPEIHPHFIGTYWGAISTSFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAVIVQPNRVTIGNGPTFGCVLMKDFLEALAKKVKHNPTSLENYRRIFVPEGVPLKSAPNEPLRVNVLFKHIQGMLTNETAVIAETGDSWFNCQKLKLPEKCGYEFQMQYGSIGWSVGATLGYAQAVPDKRVIACIGDGSFQVTVQDVSTMIRNGQNTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDALHNGEGKCWTVKVKTEEEVVEAIKTSLGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANGRPPNPQ

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
2188	87		12		0.992554
2200	12		87		0.992554
2202	12			87	0.992554
2204	12			87	0.992554
2205	12			87	0.992554
2210	85		14		0.993533
2214		85		14	0.993533
2217		14	85		0.993533
2221		11		88	0.923564
2224	88		11		0.923564
2226	87		12		0.992554
2230	75		12	12	0.975346
2233	87			12	0.992554
2236		12	87		0.992554
2237	12			87	0.992554
2249			87	12	0.992554
2284			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain