SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene70

Length: 3486 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene70
TGCATTCCTTCAATAGGAAGAATATTGCATTTGACTATCTATGGATGTTCCTGCCAAGTTGTGAGCTTGGCTGTCCGTCTTGCCTTCTTTACAAATTCTCTTTTCATGGATATGCCCAATGCTCCCAAAGTCCGAAATATGCTGTCTTTCAGTGTCTTAACTCCTTATTATAAAGAAGAAGTTCTGTATTCACTGCATGAACTTCAGCTGGAGAATGAAGATGGCGTTTCCATAGTTTTCTATTTGCAGAAGATTTATCCAGATGAATGGAAAAATTTTCTAGAACGTGTACAATGCGATAGTGAGGATCAGGTCTTGAATGACCCTGATAAAATAGAAGATCTTCGTCACTGGGCATCTAATCGAGGGCAAACTCTCACGAGGACAGTCAGAGGAATGATGTACTATAGAAAGGCCTTGGAACTGCAATCTTTTCTAGATATGGCAAAACCAGATGATATTTTGAAAGGCTACAAGGCTGTTGCTTTTGCGCCTAAGGAGCAAGACAAGAACCAACGATCAATGGGGGCACAGCTAGAGGCAGTTGCTGACATGAAATTTACATATGTTGTTTCCTGTCAAAATTACGGTGCACAGAAGAGATCTAATGAGCGGAATTACGCAGACATTTTAAACCTTATGAGGACATACCCATCTCTACGTGTTGCCTACATTGATGAAGTAGAAGAGAGGGAGAAGGATAAACCTCATAAGGTTTATTATTCTGTGCTTGTCAAAGCAGTTGATGGTTTTGACCAGATAATATACCGTATCAAGCTGCCTGGTCCTGCTATTCTTGGTGAGGGGAAGCCAGAGAATCAGAATCATGCGATTATTTTCACTCGTGGAGAGGCTCTTCAGACAATTGATATGAATCAGGACAACTATCTAGAAGAAGCTTTCAAAATGCGAAACTTGTTGGAAGAATTTCTTAAGAAACATGGTGTACGACGCCCGACAATACTTGGTCTTAGAGAACATATTTTTACTGGCAGTGTTTCGTCGCTTGCTTGGTTCATGTCAAATCAAGAAACTAGTTTTGTTACCATTGGACAGCGTCTGCTAGCAAGCCCGCTTAAGGTGCGCTTTCATTATGGGCATCCTGATGTATTTGATAGATTGTTTCACCTCACAAGAGGTGGGATAAGCAAAGCTTCAAAAGGTATCAACTTAAGTGAGGACATTTTTGCAGGATTCAATTCTACACTACGGCAAGGAAATGTAACTCATCATGAATACATGCAAGTTGGTAAAGGTCGTGATGTGGGACTCAATCAAATATCACAATTTGAGGCAAAGGTGGCAAATGGGAATGGTGAACAGACTTTGAGTCGTGATATTTATCGACTTGGACACCGCTTTGACTTTTTCCGGATGCTGTCTTGCTATTTCACTACCGTTGGGTTTTATTTCAGTTCCCTGGTGACAGTGCTTACAGTGTATATTTTTCTGTATGGTCGATTGTATTTGGTTTTGAGTGGACTTGAAGAGGCAATGTTACATGAAGCTGCTGTACAACATAATACTTCTCTGGAAGCAGCCCTTGCTTCACAATCATTTGTCCAGCTTGGTTTTTTATTGGCCTTACCTATGGTGATGGAGATTGGCCTAGAACGAGGATTCCGCAAAGCCTTAAGTGACTTTGTGATCATGCAGCTGCAGATGGCAGCAGTTTTCTTTACTTTCTCTCTTGGGACGAAGACACATTATTATGGCCGCACATTACTTCATGGTGGAGCAAAATACAGAGCTACTGGGCGTGGATTTGTTGTCTTTCATGCTAAGTTTGCAGAAAACTACCGCTTCTATTCACGCAGTCACTTTGTCAAAGGACTTGAGTTGATGTTGCTCTTGATTGTGTACACTGTCTATAGCCAGTCATCTCGTAAGACTGTTGTCTATATCTTAATCACTTATTCCATGTGGTTTATGGTTGGGACATGGCTATTTGCACCTTTCCTGTTCAATCCTTCTGGATTCGAATGGCAAAAAATTGTGGATGACTGGACAGATTGGAATAAGTGGATCAACAATCGAGGAGGTATTGGTGTGCTACAGGAAAAGAGTTGGGAATCCTGGTGGGATGAGGAACAGGAGCATCTCAAGCATTCGGGATTGCGGGGACGGATTTGGGAGATATTGTTATCACTCAGATTTTTCCTCTATCAATATGGATTGGTTTATCACCTAAATATTGCACATGAACACAGGAGTGTTCTGGTATATGGGCTATCTTGGGTTGTTATTGCAGTCGTTTTATTGGTATTGAAGGTTGTATCCATGGGAAGGCGGAGGTTCAGTGCAGATTTTCAGCTCATGTTCCGACTTCTGAAGGGGCTTCTTTTCATTGGCTTCTTATCAGTTCTTATTATTCTCATAGTTGTCTGTGGTTTAACCATATCAGACTTGTTTGCATGTTTCCTTGCATTCATGCCTACTGGATGGGCTTTCCTGCAGATTGCACTAGCCTGCAGGCCTCTATTACAGCACGCTGGATTTTGGGATTCTGTTCGTGCCCTTGCTCGGAGTTATGATTATGTAATGGGACTCCTACTTTTTACACCAGTTGCTATATTGGCTTGGTTTCCATTTGTATCTGAGTTCCAGACCCGTTTGCTCTTCAATCAGGCCTTCAGTAGAGGCCTGCAAATTTCACGTATTCTTGCTGGTAGGAAAAAAGATTGGTCTTCCACAAGCACAGAATAATATGCTGCACTATCGTGTTATGTTCATCTGATAAGATGCCGGGTCTTACATGAATTTGTTTTCATGGCCCGCTTGTCTACCTAAGTTGAGAAATCTATAGATAGTCAAATGCAATATTCTTCCTATTGAAGGAATGCACTATCTTCACAACATTTGTGGATTCCTTCTTTGATAACAATCATGACAATGTATTACCTAATATTGCAGTCTTTGTGATCTCAAGAATGGTGGATGAGCAAGATGATGTTCAACTCATTTTCTATCCGATATTTGGATAAAATATCAGTATCTCTGTGAAGTTGACATTATTGCAGATGTATGCTTCGTAGAATGGAGGTAACACTGAAGTCATTTTCTCATGTAAAGTAAGGAGTTAGCAATTAAGATGTAATATCATTGGTCTTAAACATTATGTTTTAACTTGTAAATATTGGAACTGGAAATAGCTTTATTCGTCCATTGTAAAATATTTTTTCTTGCTAGAGTGCATCCCATTTCAAACAATTCTATTTTGGAAACATAAAAATCATGTTATAAATTTTCTAGTGCTCCACGGGCATGCATCTCCAAAGCACATTCACTGTGTTTGGAACAAGGGTAGTACAGTGGCAAGGTGCCCAGCTGTGGTTGGTATGTGGGAGAAGGCATGAAACATTGTTGGGAATATACCCTGAACATGGAGATTATTTCCTTCCGAAAATGACATTTTAAGGATGCTTATAAATTTTCTGAAGCACGGCCTACTTCTATACGCTCGCTTCCCAAAAAAGCGTACCAGAT

Ace file of the UniGene sp_v3.0_unigene70 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02364, Glucan_synthase, 1,3-beta-glucan synthase component	-	-	0.0	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	1,3-beta-glucan synthase	-	-	2.792e-37	-

Source	ECs	Term	Type	e value	Identity
Sma3	1,3-beta-glucan synthase.	EC:2.4.1.34	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	At1g05570; At1g06490; At2g13680; At2g31960; At2g36850; At3g07160; At3g14570; At3g59100; At4g03550; At4g04970; At5g13000; At5g36870; CALS1; CALS10; CALS11; CALS12; CALS2; CALS3; CALS4; CALS5; CALS6; CALS7; CALS8; CALS9; CFL1; CHLREDRAFT_123118; CalS3; CalS

Source	GOs	Term	Type	Identity
Sma3	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-
Sma3	regulation of cell shape	GO:0008360	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	response to fungus	GO:0009620	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	defense response signaling pathway, resistance gene-dependent	GO:0009870	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	pollen wall assembly	GO:0010208	Biological Process	-
Sma3	developmental growth	GO:0048589	Biological Process	-
Sma3	defense response by callose deposition	GO:0052542	Biological Process	-
Sma3	callose deposition in cell wall	GO:0052543	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycosyl transferase, family 48	IPR003440	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR015706	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13000.1	ATGSL12, gsl12 glucan synthase-like 12 chr5:4110445-4121202 REVERSE LENGTH=1955	75%
RefSeq	Arabidopsis thaliana	NP_196804.6	callose synthase [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002299147.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A848

Fln msg: your sequence is longer than subject: 867 - 248

Fln protein: MDMPNAPKVRNMLSFSVLTPYYKEEVLYSLHELQLENEDGVSIVFYLQKIYPDEWKNFLERVQCDSEDQVLNDPDKIEDLRHWASNRGQTLTRTVRGMMYYRKALELQSFLDMAKPDDILKGYKAVAFAPKEQDKNQRSMGAQLEAVADMKFTYVVSCQNYGAQKRSNERNYADILNLMRTYPSLRVAYIDEVEEREKDKPHKVYYSVLVKAVDGFDQIIYRIKLPGPAILGEGKPENQNHAIIFTRGEALQTIDMNQDNYLEEAFKMRNLLEEFLKKHGVRRPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLASPLKVRFHYGHPDVFDRLFHLTRGGISKASKGINLSEDIFAGFNSTLRQGNVTHHEYMQVGKGRDVGLNQISQFEAKVANGNGEQTLSRDIYRLGHRFDFFRMLSCYFTTVGFYFSSLVTVLTVYIFLYGRLYLVLSGLEEAMLHEAAVQHNTSLEAALASQSFVQLGFLLALPMVMEIGLERGFRKALSDFVIMQLQMAAVFFTFSLGTKTHYYGRTLLHGGAKYRATGRGFVVFHAKFAENYRFYSRSHFVKGLELMLLLIVYTVYSQSSRKTVVYILITYSMWFMVGTWLFAPFLFNPSGFEWQKIVDDWTDWNKWINNRGGIGVLQEKSWESWWDEEQEHLKHSGLRGRIWEILLSLRFFLYQYGLVYHLNIAHEHRSVLVYGLSWVVIAVVLLVLKVVSMGRRRFSADFQLMFRLLKGLLFIGFLSVLIILIVVCGLTISDLFACFLAFMPTGWAFLQIALACRPLLQHAGFWDSVRALARSYDYVMGLLLFTPVAILAWFPFVSEFQTRLLFNQAFSRGLQISRILAGRKKDWSSTSTE*

Protein Length: 868

Fln nts: TGCATTCCTTCAATAGGAAGAATATTGCATTTGACTATCTATGGATGTTCCTGCCAAGTTGTGAGCTTGGCTGTCCGTCTTGCCTTCTTTACAAATTCTCTTTTC_-_ATGGATATGCCCAATGCTCCCAAAGTCCGAAATATGCTGTCTTTCAGTGTCTTAACTCCTTATTATAAAGAAGAAGTTCTGTATTCACTGCATGAACTTCAGCTGGAGAATGAAGATGGCGTTTCCATAGTTTTCTATTTGCAGAAGATTTATCCAGATGAATGGAAAAATTTTCTAGAACGTGTACAATGCGATAGTGAGGATCAGGTCTTGAATGACCCTGATAAAATAGAAGATCTTCGTCACTGGGCATCTAATCGAGGGCAAACTCTCACGAGGACAGTCAGAGGAATGATGTACTATAGAAAGGCCTTGGAACTGCAATCTTTTCTAGATATGGCAAAACCAGATGATATTTTGAAAGGCTACAAGGCTGTTGCTTTTGCGCCTAAGGAGCAAGACAAGAACCAACGATCAATGGGGGCACAGCTAGAGGCAGTTGCTGACATGAAATTTACATATGTTGTTTCCTGTCAAAATTACGGTGCACAGAAGAGATCTAATGAGCGGAATTACGCAGACATTTTAAACCTTATGAGGACATACCCATCTCTACGTGTTGCCTACATTGATGAAGTAGAAGAGAGGGAGAAGGATAAACCTCATAAGGTTTATTATTCTGTGCTTGTCAAAGCAGTTGATGGTTTTGACCAGATAATATACCGTATCAAGCTGCCTGGTCCTGCTATTCTTGGTGAGGGGAAGCCAGAGAATCAGAATCATGCGATTATTTTCACTCGTGGAGAGGCTCTTCAGACAATTGATATGAATCAGGACAACTATCTAGAAGAAGCTTTCAAAATGCGAAACTTGTTGGAAGAATTTCTTAAGAAACATGGTGTACGACGCCCGACAATACTTGGTCTTAGAGAACATATTTTTACTGGCAGTGTTTCGTCGCTTGCTTGGTTCATGTCAAATCAAGAAACTAGTTTTGTTACCATTGGACAGCGTCTGCTAGCAAGCCCGCTTAAGGTGCGCTTTCATTATGGGCATCCTGATGTATTTGATAGATTGTTTCACCTCACAAGAGGTGGGATAAGCAAAGCTTCAAAAGGTATCAACTTAAGTGAGGACATTTTTGCAGGATTCAATTCTACACTACGGCAAGGAAATGTAACTCATCATGAATACATGCAAGTTGGTAAAGGTCGTGATGTGGGACTCAATCAAATATCACAATTTGAGGCAAAGGTGGCAAATGGGAATGGTGAACAGACTTTGAGTCGTGATATTTATCGACTTGGACACCGCTTTGACTTTTTCCGGATGCTGTCTTGCTATTTCACTACCGTTGGGTTTTATTTCAGTTCCCTGGTGACAGTGCTTACAGTGTATATTTTTCTGTATGGTCGATTGTATTTGGTTTTGAGTGGACTTGAAGAGGCAATGTTACATGAAGCTGCTGTACAACATAATACTTCTCTGGAAGCAGCCCTTGCTTCACAATCATTTGTCCAGCTTGGTTTTTTATTGGCCTTACCTATGGTGATGGAGATTGGCCTAGAACGAGGATTCCGCAAAGCCTTAAGTGACTTTGTGATCATGCAGCTGCAGATGGCAGCAGTTTTCTTTACTTTCTCTCTTGGGACGAAGACACATTATTATGGCCGCACATTACTTCATGGTGGAGCAAAATACAGAGCTACTGGGCGTGGATTTGTTGTCTTTCATGCTAAGTTTGCAGAAAACTACCGCTTCTATTCACGCAGTCACTTTGTCAAAGGACTTGAGTTGATGTTGCTCTTGATTGTGTACACTGTCTATAGCCAGTCATCTCGTAAGACTGTTGTCTATATCTTAATCACTTATTCCATGTGGTTTATGGTTGGGACATGGCTATTTGCACCTTTCCTGTTCAATCCTTCTGGATTCGAATGGCAAAAAATTGTGGATGACTGGACAGATTGGAATAAGTGGATCAACAATCGAGGAGGTATTGGTGTGCTACAGGAAAAGAGTTGGGAATCCTGGTGGGATGAGGAACAGGAGCATCTCAAGCATTCGGGATTGCGGGGACGGATTTGGGAGATATTGTTATCACTCAGATTTTTCCTCTATCAATATGGATTGGTTTATCACCTAAATATTGCACATGAACACAGGAGTGTTCTGGTATATGGGCTATCTTGGGTTGTTATTGCAGTCGTTTTATTGGTATTGAAGGTTGTATCCATGGGAAGGCGGAGGTTCAGTGCAGATTTTCAGCTCATGTTCCGACTTCTGAAGGGGCTTCTTTTCATTGGCTTCTTATCAGTTCTTATTATTCTCATAGTTGTCTGTGGTTTAACCATATCAGACTTGTTTGCATGTTTCCTTGCATTCATGCCTACTGGATGGGCTTTCCTGCAGATTGCACTAGCCTGCAGGCCTCTATTACAGCACGCTGGATTTTGGGATTCTGTTCGTGCCCTTGCTCGGAGTTATGATTATGTAATGGGACTCCTACTTTTTACACCAGTTGCTATATTGGCTTGGTTTCCATTTGTATCTGAGTTCCAGACCCGTTTGCTCTTCAATCAGGCCTTCAGTAGAGGCCTGCAAATTTCACGTATTCTTGCTGGTAGGAAAAAAGATTGGTCTTCCACAAGCACAGAATAA___TATGCTGCACTATCGTGTTATGTTCATCTGATAAGATGCCGGGTCTTACATGAATTTGTTTTCATGGCCCGCTTGTCTACCTAAGTTGAGAAATCTATAGATAGTCAAATGCAATATTCTTCCTATTGAAGGAATGCACTATCTTCACAACATTTGTGGATTCCTTCTTTGATAACAATCATGACAATGTATTACCTAATATTGCAGTCTTTGTGATCTCAAGAATGGTGGATGAGCAAGATGATGTTCAACTCATTTTCTATCCGATATTTGGATAAAATATCAGTATCTCTGTGAAGTTGACATTATTGCAGATGTATGCTTCGTAGAATGGAGGTAACACTGAAGTCATTTTCTCATGTAAAGTAAGGAGTTAGCAATTAAGATGTAATATCATTGGTCTTAAACATTATGTTTTAACTTGTAAATATTGGAACTGGAAATAGCTTTATTCGTCCATTGTAAAATATTTTTTCTTGCTAGAGTGCATCCCATTTCAAACAATTCTATTTTGGAAACATAAAAATCATGTTATAAATTTTCTAGTGCTCCACGGGCATGCATCTCCAAAGCACATTCACTGTGTTTGGAACAAGGGTAGTACAGTGGCAAGGTGCCCAGCTGTGGTTGGTATGTGGGAGAAGGCATGAAACATTGTTGGGAATATACCCTGAACATGGAGATTATTTCCTTCCGAAAATGACATTTTAAGGATGCTTATAAATTTTCTGAAGCACGGCCTACTTCTATACGCTCGCTTCCCAAAAAAGCGTACCAGAT

Fln Alignment:

Contig70___APFLFNPSGFEWQKIVDDWTDWNKWINNRGGIGVLQEKSWESWWDEEQEHLKHSGLRGRIWEILLSLRFFLYQYGLVYHLNIAHEHRSVLVYGLSWXXXXXXXXXXXXVSMGRRRFSADFQLMFRLLKGLLFIGFLSVLIILIVVCGLTISDLFACFLAFMPTGWAFLQIALACRPLLQHAGFWDSVRALARSYDYVMGLLLFTPVAILAWFPFVSEFQTRLLFNQAFSRGLQISRILAGRKKD
D5A848____________APFLFNPSGFDWLKTVDDFDDFMNWIWYRGGILTKSEQCWEVWWTEEHDHLRNTGLWGIVLEILLDLRFFFFQYGIVYQLGISGGSKSIVVYLLSWIYVVVVLAIYIVILYAHDKYAAKQHIYYRAIQALVISCTILAILLLLQLTKLKLVDLVTSLLAFVPTGWGLILIAQVLKPFLQSSIVWEMVIAVARLYEVTFGIIVMIPMAILSWLPGFQSMQTRILFNEAFSRGLQISRILAGKKSN

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
784		40		60	1.0
3407	40			60	1.0
3408			60	40	1.0
3410		20	60		0.99255
3411		20	20	60	0.99255
3413	60	20	20		0.99255
3419	60		40		1.0
3420	60			40	1.0
3422		40	60		1.0
3424		60		20	0.99255
3425	60	20		20	0.99255
3426		80		20	0.995493
3427	20		80		0.995493
3430	20	60	20		0.99255

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain