SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene43

Length: 867 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene43

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B	-	-	85%
FL-Next	sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Sma3	Histone H3	-	-	-

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H3	IPR000164	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65360.1	Histone superfamily protein chr5:26120099-26120509 REVERSE LENGTH=136	100%
RefSeq	Arabidopsis thaliana	NP_563838.1	histone H3 [Arabidopsis thaliana]	100%
RefSeq	Populus trichocarpa	XP_002299242.1	histone H3 [Populus trichocarpa]	100%

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
264			83	16	0.994512
265	83		16		0.994512
266			16	83	0.994512
267		83	16		0.994512
295		16		83	0.994512
315		85		14	0.993533
422		12		87	0.992554
689		13		86	1.0
716		4	95		1.0
736	91		8		1.0
738	96			2	0.997091
747	7	11		77	1.0
748		80	1		1.0
749	84	7	5	2	0.999993
759		62	37		1.0
769	38		61		1.0
782		81		18	0.999994
783		81		18	0.999994
784	81			18	0.999994
788		54	45		1.0
790			27	72	1.0
821		25		75	1.0
830		37		62	1.0
834	37			62	1.0
848		12		87	0.992554
853			20	80	0.995493
860	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain