SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene39

Length: 1843 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene39

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S0D8_RICCO	-	-	0.0	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	CHY zinc finger family protein, expressed	-	-	3.957e-24	-

Source	Gene names
Sma3	At3g62970; At5g18650; At5g22920; At5g25560; CHLREDRAFT_123572; GSVIVT00000606001; GSVIVT00019811001; GSVIVT00022148001; GSVIVT00023586001; LOC_Os03g05270; LOC_Os03g22680; LOC_Os10g31850; LOC_Os12g35320; OSJNBa0067N01.18; OSTLU_44133; Os01g0719100; Os03g01

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CHY-type	IPR008913	-	-
Sma3	Zinc finger, CTCHY-type	IPR017921	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G22920.1	CHY-type/CTCHY-type/RING-type Zinc finger protein chr5:7665143-7667031 FORWARD LENGTH=291	69%
RefSeq	Arabidopsis thaliana	NP_197683.1	ring finger and CHY zinc finger domain-containing protein 1 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002314304.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9X0

Fln msg:

Fln protein: MEVECCSPRSSAQGCEIDLKPTMVVEDTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRKVICSLCRTEQDVQQTCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGNDNFFHCYKCGCCYSIQLKDCHPCVEKAMHHNCPVCFEYLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVALTPMPEAYQHKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQTRGGPSASSCRSHL*

Protein Length: 296

Fln nts: ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCTGAGGGTGGCGGTTTCAATGGGCTGCCCCGAATGGTTTTGAGTTGAGTAGCGGGTTTATAAGTCCGGGATTTGGTGGTTTTTTAATGGGGCTAAGCTATTCTTAATTTTGTTCTGTTGGGTAGGTTGGATATTCTGGTGTGCGTTGCAGTTCTGGCCATGAATTTTGGCAGAATGTGCGATTAGGGTTTGATTCTGGGTGTTCTTTTCAGGTACATTGTGAGAAAGCAGAGATTTGAAGGGGATTTGAATTTGAATC_-_ATGGAAGTTGAGTGCTGCAGCCCTCGGTCTTCTGCTCAGGGGTGTGAAATTGACCTCAAGCCAACGATGGTGGTGGAAGATACGCTTAATCAAGGATGCATGCAATATGGATGTTCACACTACCGCCGGAGATGCCAAATAAGGGCTCCGTGTTGTAATGAAGTCTTTGACTGTAGGCATTGTCATAATGAGGCCAAAAATTCAATGGATGTCCATCCACTTGACAGACATGATGTACCACGCCATGAAGTTCGAAAGGTTATCTGTTCACTTTGTAGAACTGAACAAGATGTTCAGCAAACCTGCGTTACTTGTGGTGTTTGTATGGGAAAGTACTTTTGTGAAAAATGCAATTTTTTTGATGACGAGGACTCAAAACAGCAATACCACTGTGATGGATGTGGAATTTGCAGAACTGGTGGCAACGATAATTTCTTCCACTGTTATAAATGTGGATGTTGCTATTCTATACAATTGAAGGATTGCCACCCTTGTGTGGAAAAAGCAATGCACCACAACTGCCCTGTGTGTTTCGAGTATTTATTCGACTCTACAAAGCTTATCAGCGTATTGCCTTGTGGTCACACTATTCACATGCATTGCTTGAAAGAGATGCACGAGCATCTTCAATTTGCTTGTCCAGTGTGCTCCAAATCTGTCTGTGATATGTCTAAATTATGGGAGAAACTTGACCGAGAGGTTGCTTTGACTCCAATGCCTGAAGCTTACCAGCACAAAATGGTTTGGATCTTATGCAATGACTGTGGAGTAACTTCTGAAGTAAATTTTCACATTGTTGCACACAAGTGTCAAAGTTGCAATTCTTATAACACCCGGCAGACCAGGGGAGGTCCTTCTGCAAGTTCATGTAGATCGCATCTTTGA___TATTCAAGTTGCAATTCTTATAACACCCGGCAGACCAGGGGAGGTCCTTCTGCAAGTTCATGTAGATCGCATCTTTGATATTCTCAATGTTCAGATTCATGTATCCCTCTTTGCCACTTGTAAGGTTGTTTTAGCACTGCTTATGTGGCATGAAAAACAGCTGTACTGCAAATTGCTATGCAGTGGCATTACTGTAAGAATTCATTGCATTGTAACCGCTGAGTTCTTGTGGCACTACTCTACGGTTGTTAACATCATAACAGAGTTGATGCTCTGTGCCCATTTCAACAAAGACCACAAGAAGGGAATTTTTTTATCCTGCAGCTCTCACGCCACGACAAAACGAGTATCAAATTCTGTCTCTGCAAATCTGCAGATCATGAATTACAATGGATTGAAGGTCTCTTTTTCTGTATGTGACTCTAGTCTGACCAGGTACGTGCAGGATTTATTTTCCTGTGAAGTGAAGATGTATTTTCCCTTTTTAAATGGCATGTTATTTCTCAAGCAATTTACTGGTTTAGCGATTTCAATTTTTGTCAAGTGCTTGTTGAAATATTTTTCTTCGGCTGCACTGAGAAGAATGCAAATAAATTTGAATGCTATTCTCTTAAGAGAATGGTAGAAGAAACCAGATATATCCATCTCAAGCCTAA

Fln Alignment:

Contig39___DTLNQGCMQYGCSHYRRRCQIRAPCCNEVFDCRHCHNEAKNSMDVHPLDRHDVPRHEVRKVICSLCRTEQDVQQTCVTCGVCMGKYFCEKCNFFDDEDSKQQYHCDGCGICRTGGNDNFFHCYKCGCCYSIQLKDCHPCVEKAMHHNCPVCFEYLFDSTKLISVLPCGHTIHMHCLKEMHEHLQFACPVCSKSVCDMSKLWEKLDREVALTPMPEAYQHKMVWILCNDCGVTSEVNFHIVAHKCQSCNSYNTRQTRG
D5A9X0____________DRLNTGKMEHGCDHYRRRCRIRAPCCNEIYDCRHCHNEAMSHLK-DPKQRHELPRYKVERVICSLCDTEQNVNQVCENCGVKMGEYFCSKCKFFDDDISKKQYHCDDCGICRVGGRDNFFHCQKCGCCYTVGLQKAHSCVENSMRHNCPVCFEYLFDSLKPIAVLRCGHTMHGDCLSEMQMHSQYSCPMCSKSVCDMSLIWEQLDQEIAATPMPNDYQDKMVWILCNDCDTFSEVQFHIVAQKCLKCKSYNTRQTRG

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
133		20	80		0.995493
135			80	20	0.995493
139	80		20		0.995493
141		20	80		0.995493
144	80			20	0.995493
145			20	80	0.995493
146			20	80	0.995493
151	80	20			0.995493
153		20		80	0.995493
155		20		80	0.995493
156	20			80	0.995493
157	20		80		0.995493
190	20		80		0.995493
196	20		80		0.995493
228	12			87	0.992554
416	70	30			1.0
419	30			70	1.0
420	30			70	1.0
422	66		33		1.0
662		33		66	0.997452
1002	25		75		0.996473
1040	25	75			0.996473
1141	12	87			0.992554
1142	11	77		11	0.968132
1143			88	11	0.923564
1145		77	22		0.999999
1146	88		11		0.923564
1184		90		10	0.90298
1499	87			12	0.992554
1675	14			85	0.993533
1679			14	85	0.993533
1680	85		14		0.993533
1744	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain