SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene32

Length: 2371 nt

UniGene Fasta

>sp_v3.0_unigene32
TGATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCAGAAGGAAGAAGCGTACAACATCACAAAAGGCCAAAGAGCAGGTCGAGGCTGCTCCCACTGAAATCTTTCGCCATTCGACTGTTAGAAAGCACAACGAAGCAGTCGTCAGCTTTTGAATACCAATTCCGTGTGCGATCGGAATCCTCCCTGCCCCTGCATCCTTTGGGCAGCTCGCGGAATAACAAGCCTCTGCTGGTTTGGGGTTCTTGGATGCAGAATTAGAAGACAGCGCCATGGAAACGGGCGCTGCGGCAGTAGACGGTCACATACAGGGAATTCTGACCCATGGCGGTCAGTATGTGCAGTATAATATCTTTGGGAACCTCTTCGAGGTCTTCTCCAAGTACATCCCCCCCATACGACCTATCGGCCGCGGCGCATATGGCATTGTCTGTTCGGCAGTGAACTCGGAGACAAATGAGGAAGTTGCAATTAAGAAAATTGGCAATGCTTTTGATAACAGAATTGATGCAAAGAGGACTCTTCGCGAAATTAAGCTTCTATGCCATATGGAACATGAAAATATCATTGCAATTAAAGACATCATTCGGCCACCTCAGAGAGAAAATTTTAATGATGTTTATATTGTATATGAGCTCATGGATACAGATCTCTACCAGATTATACGCTCCACTCAACCATTAACAGAGGATCACTGTCAGTACTTCCTATATCAACTATTGAGAGGGCTGAAGTACATACACTCAGCAAACATTCTGCATAGAGATTTAAAACCCAGTAATTTGCTTCTAAATGCAAACTGTGACCTAAAAATATGTGATTTTGGGCTTGCACGGACTACTTCAGAAACGGACTTTATGACAGAGTATGTTGTTACTCGCTGGTATCGTGCACCGGAACTACTATTGAATTGTTCCGAGTATACAGCAGCCATTGATATCTGGTCAGTGGGCTGCATTTTTATGGAGATACTAAAGCGGGAGCCCTTGTTTCCTGGTAAAGATTATGTTCAGCAATTAAGGCTCATCACTGAGTTAATTGGTTCACCAGATGACTCTGATCTTGGATTTTTACGGAGTGACAATGCTAGAAGATACATCAGGCAACTTCCACAGTTTCCTAAGCAACCTTTTTCTCAGAAATTCCCCAACATGGCTCCAGCAGCTGTAGATTTACTTGAAAAAATGCTTGTATTTGATCCAAGCAAACGCATTACAGTTCAAGAGGCCTTGAGTCACCCTTACTTGGCAAGTCTGCATGACATCAATGATGAACCCAGCTGCCCCACTCCTTTCAACTTTGATTTTGAGCAGCCCTCGTTCACCGAGGAACATATAAAAGAGCTCATTTGGAGGGAATCTCTTAACTTCAACCCAGACATGATGCAATAGCTGGAGCAGACAGGCTTGATATTTATCTTGTAATTCCTCTTTACTGGTTATGTTATTATATTTCTGCAAGGCAATCCTTCTCTTGGTTTATTATTGTCTTCTGAAGGTTTGCAGATCATTGTGCAGGTGTGGAAACTTGTTTTATTAGAGTTAGGTTTGCTTTTATTCTTTGGTGGTCTGGTAAAAGAAAAGGAATTGATGGATATGCTTACAGATCGATTGTGAAAATTGTGTATTCCTAATCTGAGCCAACTATTGGCCTTTACTTTTATTATCATTGGACATTAAAATGTAACTGGGAAACTTAATAATCTAAAGTAAATGCCGAAGGAATTTGTAAGTTGTCTTGCAAACATGATTTCATACATTTGGATTTGCAAGTGTGACAAATTAGTTGGAAATGGTGCCATCTTTGGCACTAATAACATCGCTTGGTATTTTGTACACAGCACTCTTGAAGAATTATATAATCTGGGAGTTATATCCGTAACTGGAAATTTGGAATATGGGAGTTCGCCGTATGGCTGAAAATTTCAATAATATTTTATTTGGGAGATGGTCGCAGGAGTTGGGGGTCACTTTATTGTGCTCTTCTTTATTGCAATGTATACATTGGTTTTGATGTCCTGTAATTAATTCCTTAACCAATGTATGATTTATGGTGTAGAATTCTCAGTTAATTGGTGGAAATGAACAAGGAAGATTGCTTATGAAAGATATGCCAACACATTTTAATGGTTTTGATTGTTGGGAGCAGTTTTAGTACTACTGTAATGGGCAGGCAAGGAAATTTAGGGTCTTTGGTTGTTTATGTCAACAAATTTCATGAAACTGAGAAAATATGAAAAAGTTGAGGTCATCATTGATAGTGTTACAGAAAAACCAGGATCTCAAAATGCCAACTCTGTTGAAAATATTTATAAAAGCAGGGAAACCATGGAAAACACATAAATAATGAAGTTGTGCTATTA

Ace file of the UniGene sp_v3.0_unigene32

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitogen activated protein kinase 13 n=3 Tax=Pinaceae RepID=C7ENI4_PINTA	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	MAP kinase activity	GO:0004707	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	JNK MAP kinase	IPR008351	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G01370.1	ATMPK4, MPK4 MAP kinase 4 chr4:567219-568889 FORWARD LENGTH=376	81%
RefSeq	Arabidopsis thaliana	NP_192046.1	mitogen-activated protein kinase 4 [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002298015.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXQ5

Fln msg:

Fln protein: METGAAAVDGHIQGILTHGGQYVQYNIFGNLFEVFSKYIPPIRPIGRGAYGIVCSAVNSETNEEVAIKKIGNAFDNRIDAKRTLREIKLLCHMEHENIIAIKDIIRPPQRENFNDVYIVYELMDTDLYQIIRSTQPLTEDHCQYFLYQLLRGLKYIHSANILHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCIFMEILKREPLFPGKDYVQQLRLITELIGSPDDSDLGFLRSDNARRYIRQLPQFPKQPFSQKFPNMAPAAVDLLEKMLVFDPSKRITVQEALSHPYLASLHDINDEPSCPTPFNFDFEQPSFTEEHIKELIWRESLNFNPDMMQ*

Protein Length: 374

Fln nts: TGATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGCAGAAGGAAGAAGCGTACAACATCACAAAAGGCCAAAGAGCAGGTCGAGGCTGCTCCCACTGAAATCTTTCGCCATTCGACTGTTAGAAAGCACAACGAAGCAGTCGTCAGCTTTTGAATACCAATTCCGTGTGCGATCGGAATCCTCCCTGCCCCTGCATCCTTTGGGCAGCTCGCGGAATAACAAGCCTCTGCTGGTTTGGGGTTCTTGGATGCAGAATTAGAAGACAGCGCC_-_ATGGAAACGGGCGCTGCGGCAGTAGACGGTCACATACAGGGAATTCTGACCCATGGCGGTCAGTATGTGCAGTATAATATCTTTGGGAACCTCTTCGAGGTCTTCTCCAAGTACATCCCCCCCATACGACCTATCGGCCGCGGCGCATATGGCATTGTCTGTTCGGCAGTGAACTCGGAGACAAATGAGGAAGTTGCAATTAAGAAAATTGGCAATGCTTTTGATAACAGAATTGATGCAAAGAGGACTCTTCGCGAAATTAAGCTTCTATGCCATATGGAACATGAAAATATCATTGCAATTAAAGACATCATTCGGCCACCTCAGAGAGAAAATTTTAATGATGTTTATATTGTATATGAGCTCATGGATACAGATCTCTACCAGATTATACGCTCCACTCAACCATTAACAGAGGATCACTGTCAGTACTTCCTATATCAACTATTGAGAGGGCTGAAGTACATACACTCAGCAAACATTCTGCATAGAGATTTAAAACCCAGTAATTTGCTTCTAAATGCAAACTGTGACCTAAAAATATGTGATTTTGGGCTTGCACGGACTACTTCAGAAACGGACTTTATGACAGAGTATGTTGTTACTCGCTGGTATCGTGCACCGGAACTACTATTGAATTGTTCCGAGTATACAGCAGCCATTGATATCTGGTCAGTGGGCTGCATTTTTATGGAGATACTAAAGCGGGAGCCCTTGTTTCCTGGTAAAGATTATGTTCAGCAATTAAGGCTCATCACTGAGTTAATTGGTTCACCAGATGACTCTGATCTTGGATTTTTACGGAGTGACAATGCTAGAAGATACATCAGGCAACTTCCACAGTTTCCTAAGCAACCTTTTTCTCAGAAATTCCCCAACATGGCTCCAGCAGCTGTAGATTTACTTGAAAAAATGCTTGTATTTGATCCAAGCAAACGCATTACAGTTCAAGAGGCCTTGAGTCACCCTTACTTGGCAAGTCTGCATGACATCAATGATGAACCCAGCTGCCCCACTCCTTTCAACTTTGATTTTGAGCAGCCCTCGTTCACCGAGGAACATATAAAAGAGCTCATTTGGAGGGAATCTCTTAACTTCAACCCAGACATGATGCAATAG___CTGGAGCAGACAGGCTTGATATTTATCTTGTAATTCCTCTTTACTGGTTATGTTATTATATTTCTGCAAGGCAATCCTTCTCTTGGTTTATTATTGTCTTCTGAAGGTTTGCAGATCATTGTGCAGGTGTGGAAACTTGTTTTATTAGAGTTAGGTTTGCTTTTATTCTTTGGTGGTCTGGTAAAAGAAAAGGAATTGATGGATATGCTTACAGATCGATTGTGAAAATTGTGTATTCCTAATCTGAGCCAACTATTGGCCTTTACTTTTATTATCATTGGACATTAAAATGTAACTGGGAAACTTAATAATCTAAAGTAAATGCCGAAGGAATTTGTAAGTTGTCTTGCAAACATGATTTCATACATTTGGATTTGCAAGTGTGACAAATTAGTTGGAAATGGTGCCATCTTTGGCACTAATAACATCGCTTGGTATTTTGTACACAGCACTCTTGAAGAATTATATAATCTGGGAGTTATATCCGTAACTGGAAATTTGGAATATGGGAGTTCGCCGTATGGCTGAAAATTTCAATAATATTTTATTTGGGAGATGGTCGCAGGAGTTGGGGGTCACTTTATTGTGCTCTTCTTTATTGCAATGTATACATTGGTTTTGATGTCCTGTAATTAATTCCTTAACCAATGTATGATTTATGGTGTAGAATTCTCAGTTAATTGGTGGAAATGAACAAGGAAGATTGCTTATGAAAGATATGCCAACACATTTTAATGGTTTTGATTGTTGGGAGCAGTTTTAGTACTACTGTAATGGGCAGGCAAGGAAATTTAGGGTCTTTGGTTGTTTATGTCAACAAATTTCATGAAACTGAGAAAATATGAAAAAGTTGAGGTCATCATTGATAGTGTTACAGAAAAACCAGGATCTCAAAATGCCAACTCTGTTGAAAATATTTATAAAAGCAGGGAAACCATGGAAAACACATAAATAATGAAGTTGTGCTATTA

Fln Alignment:

Contig32___METGAAAVDGHIQGILTHGGQYVQYNIFGNLFEVFSKYIPPIRPIGRGAYGIVCSAVNSETNEEVAIKKIGNAFDNRIDAKRTLREIKLLCHMEHENIIAIKDIIRPPQRENFNDVYIVYELMDTDLYQIIRSTQPLTEDHCQYFLYQLLRGLKYIHSANILHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCIFMEILKREPLFPGKDYVQQLRLITELIGSPDDSDLGFLRSDNARRYIRQLPQFPKQPFSQKFPNMAPAAVDLLEKMLVFDPSKRITVQEALSHPYLASLHDINDEPSCPTPFNFDFEQPSFTEEHIKELIWRESLNFNPDMMQ
A9NXQ5____________MEAGAAAVDGHIQGILTHGGQYVQYNIFGNLFEVSSKYIPPIRPIGRGAYGIVCSAVNTETNEEVAIKKIGNAFDNRIDAKRTLREIKLLCHMEHENIIAIKDIIRPPQRENFNDVYIVYELMDTDLYQIIRSTQPLTEDHCQYFLYQLLRGLKYIHSANILHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCIFMEILKREPLFPGKDYVQQLRLITELIGSPDDSDLGFLRSDNARRYIRQLPQFPKQPFSQKFPNMAPAAVDLLEKMLVFDPSKRITVQEALSHPYLASLHDINDEPSCPTPFNFDFEQPSFTEEHIKELIWRETLNFNPDMMQ

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
202		88		11	0.923564
573	55		44		1.0
575	44	55			1.0
576	55	44			1.0
579			55	44	1.0
582	55			44	1.0
583	33			66	1.0
585	66			33	1.0
586	33	44			1.0
588	55	44			1.0
589	44		55		1.0
591		55		44	1.0
593		44		55	1.0
599			71	28	1.0
1073		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain