SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11

Length: 1405 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S15a-1 n=32 Tax=Tracheophyta RepID=R15A1_ARATH	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8	IPR000630	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G59850.1	Ribosomal protein S8 family protein chr5:24112499-24113084 REVERSE LENGTH=130	91%
RefSeq	Arabidopsis thaliana	NP_172256.1	40S ribosomal protein S15a-1 [Arabidopsis thaliana]	91%
RefSeq	Populus trichocarpa	XP_002304434.1	predicted protein [Populus trichocarpa]	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN71

Fln msg:

Fln protein: MVRISVLNDALRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRFNIGVKEIESWTARLLPSRQFGFIVLTTSAGIMDHDEARRKNAGGKILGFFY*

Protein Length: 132

Fln nts: TCTGAAAGAGTCTACGTGAAACCACATCAAGATTTGTGCATGGCCACCTTATGTGCTTAGAAATCTAATTTGTGTTTTTTTTTCACAGATGTAAGAAAAACCATAAACGCAGAGTACTGTGGCTGCTCCAAACCCTAATCAAGGACTATACATTTTTCTCCTTACTTCTAACCCTAAATCGGAAACCCTAAATCCATCGGTGGTTTTATCTGCTTCTGACATTTTACCTCTCGCTCTTGTTCAAGCGTTTTTACCCCAGTTTGTGATCTGGATGCGTACTTGCGCAAATTTTGGACTCCCGGAGACGCGAGGATTAAGTAAGTCACA_-_ATGGTTAGGATTAGTGTTTTGAATGATGCTCTCAGGAGCATGTATAATGCAGAAAAGCGTGGAAAGCGGCAAGTGATGATCAGGCCATCATCGAAAGTTATCATCAAGTTCCTCCAAGTCATGCAAAAGCATGGTTATATTGGAGAGTTTGAGCTAGTTGATGATCATAGAGCAGGTAAAATTGTTGTAGAGCTAAATGGAAGGCTCAACAAGTGTGGAGTAATCAGTCCTCGTTTTAATATTGGGGTGAAAGAAATAGAGTCGTGGACTGCTCGCTTGCTTCCTTCTAGACAGTTTGGTTTCATTGTTCTCACAACATCTGCTGGGATCATGGATCATGATGAAGCCAGGAGAAAGAATGCAGGTGGAAAAATCTTAGGATTTTTCTATTAG___AGATATCGTAATTAGGCATTGGTGCCATAAATGAAGAATATATAATCCAACATTATCTCCTAAAGCCTCGTTGAGTTTTCCAACCTGTCATTGTCTTTATATTCAAGACAAACATCATTTTTGAGGTGTATCGTGATTGGTTTCTTGTACTTTCACTATAGTGTACCATGTATTGTTTCCTTTTTATCCAGTCAGTTGCAAGTGGTATGCAGTGCAAATTTTTAAATCTGCCAAATGAGGTAAAAGAACGTATATAGTACTTTCATTTGGAAAGTTCAAATCTGGTGGAGCTTACGTTTAGCTCTTCATGTAGCTTCCATGGAATTCGCAAAGGATAATAAATAACTTAAAAGTTGATAATGCATTTATTGAAAGGTTCAATGACATGGACAGTGCCAATAGTTAAGATGGCCCTATAGTTGGGAGCAACGGATTATCTTTTTTTCTAGGAGTCATTAGGTTTGTCTCCCAGTATGGCATGTTTAAAGCATGAGAGCAGTTTAGAGATGAAGTGGTGTATTGAGGAATATCCATATTTGAGAGAACCATAACAAATTATTGTTGTTATTCTAATGATTACAGCGTGAGCTTGATGCTTATCAAAGTCAACATCGTAAACAATGACAGATGATGACTTGTTGTTCTCTTGAATTTCTCTTTATAGTCTAATGGTTCTCTTAGTGCA

Fln Alignment:

Contig11___MVRISVLNDALRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRFNIGVKEIESWTARLLPSRQFGFIVLTTSAGIMDHDEARRKNAGGKILGFFY
A9NN71____________MVRISVLNDALRSMYNAEKRGKRQVMIRPSSKVIIKFLQVMQKHGYIGEFELVDDHRAGKIVVELNGRLNKCGVISPRFNIGVKEIESWTARLLPSRQFGFIVLTTSAGIMDHDEARRKNAGGKILGFFY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1083	8		91		1.0
1086	7	3		88	0.999079
1087	8			91	0.999766
1088	8			91	0.999766

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain