SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210510

Length: 184 nt

UniGene Fasta

>sp_v3.0_unigene210510
CCACTTATGGCGGAGAAATTGGGAGAGCGTGAATTCATGGTGGAGCTCTGTAACGGTTTTCGTCTTCTGGCAGATCCCCGACTGGGCTTGATAACTTTGGAGAGCTTGAAAAGGAATGGATTCCCTGAATGAACATGAATTCTGCGTTCTGATGTTGAGATTGAGCCCTTCGTTGATGGATGAG

Ace file of the UniGene sp_v3.0_unigene210510

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding protein with EF-hand motif (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9S2_PSEMZ	-	-	2.0e-16	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	Gene names
Sma3	GSVIVT00026121001; POPTRDRAFT_572427; POPTRDRAFT_582064; RCOM_1096900;

Source	GOs	Term	Type	e value	Identity
Sma3	calcium ion binding	GO:0005509	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G46600.1	Calcium-binding EF-hand family protein chr2:19136070-19136477 FORWARD LENGTH=135	2.0e-12	64%
RefSeq	Arabidopsis thaliana	NP_566082.1	calcium-binding EF-hand-containing protein [Arabidopsis thaliana]	3.0e-12	64%
RefSeq	Populus trichocarpa	XP_002320212.1	predicted protein [Populus trichocarpa]	1.0e-13	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ27

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 20 aas, atg_distance in limit (1-15): atg_distance = 9, your sequence is shorter than subject: 60 - 115

Fln protein: MAEKLGEREFMVELCNGFRLLADPRLGLITLESLKxxxDSLNEHEFCVLMLRLSPSLMDE

Protein Length: 61

Fln nts: CCACTT_-_ATGGCGGAGAAATTGGGAGAGCGTGAATTCATGGTGGAGCTCTGTAACGGTTTTCGTCTTCTGGCAGATCCCCGACTGGGCTTGATAACTTTGGAGAGCTTGAAAxxxxxxxxxGATTCCCTGAATGAACATGAATTCTGCGTTCTGATGTTGAGATTGAGCCCTTCGTTGATGGATGAG

Fln Alignment:

Tall_8m_euler_1656___PLMAEKLGEREFMVELCNGFRLLADPRLGLITLESLKRNxxxxxxxxxxxxxxxxxxxxxxxxGMDSLNEHEFCVLMLRLSPSLMDE
A9NQ27________________PIMAEKLGERDFMAELCNGFRLLADPRLGLITLESLRRNxxxxxxxxxxxxxxxxxxxxxxxxGDGALNEHEFCVLMIRLSPSFMAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain