SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene210503

Length: 284 nt

UniGene Fasta

>sp_v3.0_unigene210503
GAAGAAAGTCTGCGACTCCTTTATGATAAATGGGCACTTCGGCATCGCACCACCAGAAGTTTGGATTCGGATGAGCATGCCAAACGATTCGAGATATTCAAAGATAATGTGAAATACATCGACTCCGTGAATCAGAAGGATGGTACATACAAGCTTGGATTGAATAAATTTGCAGATCTGAGTAACGAAGAATTCAAAGCCATGCATATGACAACCACGATGGAGAACCACAGGAGTTTGCGCAGAGACAGAGGAGTGCAGAGTGGATCATTCATGTATCAAAA

Ace file of the UniGene sp_v3.0_unigene210503

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cysteine proteinase C1A n=1 Tax=Dactylis glomerata RepID=D0VEB8_DACGL	-	-	3.0e-16	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	Gene names
Sma3	SPG31;

Source	GOs	Term	Type	e value	Identity
Sma3	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	0.0	-
Sma3	proteolysis	GO:0006508	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMA7

Fln msg: Distance to subject end: 240 aas, your sequence is shorter than subject: 94 - 372

Fln protein: EESLRLLYDKWALRHRTTRSLDSDEHAKRFEIFKDNVKYIDSVNQKDGTYKLGLNKFADLSNEEFKAMHMTTTMENHRSLRRDRGVQSGSFMYQ

Protein Length: 95

Fln nts: GAAGAAAGTCTGCGACTCCTTTATGATAAATGGGCACTTCGGCATCGCACCACCAGAAGTTTGGATTCGGATGAGCATGCCAAACGATTCGAGATATTCAAAGATAATGTGAAATACATCGACTCCGTGAATCAGAAGGATGGTACATACAAGCTTGGATTGAATAAATTTGCAGATCTGAGTAACGAAGAATTCAAAGCCATGCATATGACAACCACGATGGAGAACCACAGGAGTTTGCGCAGAGACAGAGGAGTGCAGAGTGGATCATTCATGTATCAAAA

Fln Alignment:

Root_euler_9635___EESLRLLYDKWALRHRTTRSLDSDEHAKRFEIFKDNVKYIDSVNQKDGTYKLGLNKFADLSNEEFKAMHMTTTMENHRSLRRDRGVQSGSFMYQ
B8LMA7________________DESLRGLYDKWALQHRSTRSLDSDEHARRFEIFKENVKHIDSVNKKDGPYKLGLNKFADLSNEEFKAMHMTTKMEKHKSLRGDRGVESGSFMYQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain