SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205891

Length: 583 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene205891 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Membrane protein n=1 Tax=Zea mays RepID=B6UFS0_MAIZE	-	-	1.0e-09	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Membrane protein	-	-	4.865e-16	-

Source	Gene names
Sma3	At1g27330; At1g27350; GSVIVT00002796001; J10-2; LOC_Os11g41870; LOC_Os12g32950; OJ1127_E01.101; OJ1301_C12.31; Os07g0583000; Os11g0637400; Os12g0514100; OsI_26633; OsI_36788; OsI_38508; OsJ_24895; OsJ_34547; OsJ_36275; PHYPADRAFT_115190; PHYPADRAFT_205447

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	Protein of unknown function DUF1423, plant	IPR004082	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Endoplasmic reticulum, stress-associated Ramp4	IPR010580	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
390		40		60	1.0
391	40	60			1.0
392			50	50	1.0
394	50		50		1.0
399		50		50	1.0
401	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain