SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene205865

Length: 508 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene205865
AGGAGAAATCATGTCATTGAGAACTAAATTATACATAATGAAGGTATCAAAGGAAGAAGGGATAACCTCATAACTTATGAGGGTGTCACAATAAGAGGTCAACTACAAGAACTAGGAGAAATAATGTCTGTTAAAGAATGACCACCGTTGTGCTCAATGCACTACCCGATGAATGGGGCAACTTTGTATCAAGTATCTATGGAAAGAAGGAAGCCACTCCATTCAGTGAACTTTGGTCATTATGTAAGATTGAAGAAACTAGGTTGAAGGCAAAAAGCGATGTTGGATCAAATGAACAAGTTCAAGCATATGCTGCCATGGCTAAGAGAAAAGGAAAGTTTGGAAAGTTTGATCCTTGGAAAAAGAAGAAGATCGATATGTCAAAGATACAATGCTATGAGTGTAATGAATATGGGCACTTTAAAAGGAATTGTCCTAAACTCAAGAAGGACAATAAGAACAGAAAGGAAAGAAATGAAGCCCATGTTACCGAAGAAGTAGAAGAGTC

Ace file of the UniGene sp_v3.0_unigene205865 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0001	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8Y5

Fln msg: Separated hits, possible frame ERROR between 91 and 153, STOP codon was not found. Distance to subject end: 75 aas, your sequence is longer than subject: 169 - 133

Fln protein: GEIMSLRTKLYIMKVSKEEGITS*LMRVSxxxxxxxxxxxxxxxxxxxxxxLNALPDEWGNFVSSIYGKKEATPFSELWSLCKIEETRLKAKSDVGSNEQVQAYAAMAKRKGKFGKFDPWKKKKIDMSKIQCYECNEYGHFKRNCPKLKKDNKNRKERNEAHVTEEVEE

Protein Length: 170

Fln nts: AGGAGAAATCATGTCATTGAGAACTAAATTATACATAATGAAGGTATCAAAGGAAGAAGGGATAACCTCATAACTTATGAGGGTGTCACAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCTCAATGCACTACCCGATGAATGGGGCAACTTTGTATCAAGTATCTATGGAAAGAAGGAAGCCACTCCATTCAGTGAACTTTGGTCATTATGTAAGATTGAAGAAACTAGGTTGAAGGCAAAAAGCGATGTTGGATCAAATGAACAAGTTCAAGCATATGCTGCCATGGCTAAGAGAAAAGGAAAGTTTGGAAAGTTTGATCCTTGGAAAAAGAAGAAGATCGATATGTCAAAGATACAATGCTATGAGTGTAATGAATATGGGCACTTTAAAAGGAATTGTCCTAAACTCAAGAAGGACAATAAGAACAGAAAGGAAAGAAATGAAGCCCATGTTACCGAAGAAGTAGAAGAGTC

Fln Alignment:

AllPine_b_rep_c62621___GEIMSLRTKLYIMKVSKEEGITS*LMRVSQxxxxxxxxxxxxxxxxxxxxxLNALPDEWGNFVSSIYGKKEATPFSELWSLCKIEETRLKAK
D5A8Y5________________GLVMSLKNEPRDMKMNEDDIITSYFVRISQxxxxxxxxxxxxxxxxxxxxxLNGLPKTWDAFAASMNTRKEYLTFEELWTCCAQEESRINAK

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
72	75		25		0.996473
87	66		33		0.997452
90	25		75		0.996483
109	25			75	0.996473
112		25		75	0.996473
113	75		25		0.996473
120	25			75	0.996473
148		33		66	0.997476
150		66		33	0.997453
152	66		33		0.997454
159	66		33		0.997476
178		33		66	0.997476
184		33		66	0.997476
186	66		33		0.997459
188		75		25	0.996476
190	75		25		0.996474
196	25		75		0.996474
203		75		25	0.996473
211	25			75	0.996473
214		33		66	0.997452
236		50		50	1.0
241		75		25	0.996473
251	66		33		0.997457
271	66		33		0.997452
287	33		66		0.997452
304		33		66	0.997453
308		33		66	0.997453
309		66		33	0.997452
314		33	66		0.997452
320		33		66	0.997476
329	33		66		0.997453
333		66	33		0.997461
344	33		66		0.997459
365	33		66		0.997452
369		33	66		0.997476
374		33		33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain