SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene12355

Length: 797 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene12355

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Carbohydrate transporter/ sugar porter/ transporter n=1 Tax=Zea mays RepID=B6SYQ6_MAIZE	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Major facilitator superfamily antiporter	-	-	2.016e-16	-

Source	Gene names
Sma3	AT5G13750; At3g43790; At5g13740; At5g13750; At5g13750/MXE10.2; GSVIVT00023334001; GSVIVT00033966001; GSVIVT00033971001; GSVIVT00033972001; GSVIVT00033975001; LOC_Os11g04020; LOC_Os11g04030; LOC_Os11g04060; LOC_Os11g04104; LOC_Os11g04150; LOC_Os12g03830; L

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	tetracycline:hydrogen antiporter activity	GO:0015520	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	tetracycline transport	GO:0015904	Biological Process	-
Sma3	response to antibiotic	GO:0046677	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tetracycline resistance protein, TetA/multidrug resistance protein MdtG	IPR001958	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G43790.3	ZIFL2 zinc induced facilitator-like 2 chr3:15655443-15658848 FORWARD LENGTH=484	65%
RefSeq	Arabidopsis thaliana	NP_974382.1	zinc induced facilitator-like 2 protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002310957.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
362		50	50		1.0
364			50	50	1.0
369	50			50	1.0
370		50		50	1.0
371		50		50	1.0
375	50		50		1.0
381	50			50	1.0
453			12	87	0.992554
454			87	12	0.992554
466		71		28	1.0
482		85		14	0.993533
498	12	25		62	1.0
499	75		25		1.0
501			11	88	0.923564
516		55		44	1.0
524			55	44	1.0
525		55		33	1.0
532	11		88		0.923564
533		11	88		0.923564
534	11	44		44	1.0
535		44		55	1.0
550	87	12			0.992554
570	50	50			1.0
624	55		44		1.0
631		44		55	1.0
648	62			37	1.0
652	12		87		0.992554
665		85		14	0.993533
666	85		14		0.993533
688	66		33		1.0
690			33	66	1.0
697		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain