SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene11860

Length: 1196 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene11860

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa Japonica Group] dbj\|BAD17631.1\| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa Japonica Group]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Putative uncharacterized protein At3g13224	-	-	3.622e-08	-

Source	Gene names
Sma3	AT4g26650; AT5g55550; At3g07810; At3g13224; At4g14300; At4g26650; At5g40490; At5g55550; B1131G07.23-1; B1131G07.23-2; F17A17.15; GSVIVT00012474001; GSVIVT00020662001; GSVIVT00027210001; GSVIVT00028534001; GSVIVT00029068001; GSVIVT00029149001; GSVIVT000334

Source	GOs	Term	Type	Identity
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Bacterial Ig-like, group 2	IPR003343	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13224.2	-	58%
RefSeq	Arabidopsis thaliana	NP_683559.2	RNA recognition motif-containing protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002327552.1	predicted protein, partial [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKC7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 76 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 273 - 371

Fln protein: MDSEKNENGAVSGSVPSKKKVGSDPKDSNTDIAGKTSGGKIFIGGLSWETTTEKLVDHFKEYGEIIDSVIMKDRGTGHPRGFGFVTYSDPSVIDAVIKDTHTLDGRTVEIKRSIPRESMDLIKGPKTKKLFVGGLPSSVADEELKNYFKKYGNVVESQIMQDHSTGRSRGFAFVTFDSEQTVEEILTLGKAHEFDGKEVEIKKAEPKNSMQDSRSLRQGRGGYGPGPGNYGYADGYGGYPGGGYGGGSYKSGGGYGSYGGRQGTGRYHPYSR*

Protein Length: 274

Fln nts: ATGGGATTATAAATTATTTTGCAAGAAAAGAAAGAATGAGACATATAAATGACATTTTAGAAGGAGATGGGGATTCATTTTGAACGGAGAAAATGCTGAGAAGTGCAAAACCCTAAAACCGTTGCCATAGACATTACCGCTGGAGACACAGAGGGGGAAGAATAAGAGGAATCCAGCAAATGGGTTTTTAGGGCGAAAATAAAGGCAGAGTTTTTAGGGCGAAAACAAAGGCAGAGTGCAGAGCAGTGAAGGCATAGACAGAAAGAACTGTTTTCTGAGGGTATAGCTACACATATCTACAGCTTCCCTTATAAGCCTTGGATAGATAGGAAGAGGGATAGAA_-_ATGGATTCTGAGAAGAATGAGAATGGTGCAGTCTCAGGTTCAGTCCCTTCTAAGAAGAAGGTAGGAAGTGACCCCAAGGACTCCAACACCGACATTGCAGGAAAGACTTCAGGAGGAAAAATTTTCATCGGAGGGCTTTCATGGGAAACCACCACAGAAAAATTGGTGGATCATTTCAAGGAATATGGAGAGATTATAGATTCGGTGATAATGAAAGATCGTGGAACTGGGCACCCTCGTGGTTTTGGGTTTGTAACTTATTCGGATCCTTCAGTTATAGATGCCGTTATAAAAGACACGCATACATTGGATGGAAGAACGGTTGAGATTAAACGTTCTATTCCAAGAGAAAGCATGGACTTAATCAAGGGTCCAAAGACAAAGAAACTGTTTGTTGGTGGCCTACCTTCATCTGTTGCAGATGAGGAATTAAAGAATTATTTCAAGAAATATGGAAATGTTGTCGAGTCACAAATTATGCAAGATCACAGCACTGGTCGGTCTCGAGGATTTGCATTTGTGACTTTTGATAGTGAGCAAACTGTTGAAGAAATCCTTACCCTAGGAAAGGCTCACGAGTTTGATGGCAAGGAGGTTGAAATCAAGAAAGCAGAACCAAAGAACTCCATGCAAGATTCTCGATCTCTTCGTCAGGGAAGAGGTGGCTATGGTCCTGGACCGGGTAATTATGGCTATGCTGATGGCTATGGAGGTTATCCAGGTGGTGGCTATGGAGGTGGGTCCTACAAATCAGGTGGAGGTTATGGAAGTTATGGAGGTAGACAAGGTACTGGAAGGTATCATCCATACAGTAGGTAGAACATCAAGGGTATGTGGGAGAGACAATACAGTG

Fln Alignment:

Contig11860___TSGGKIFIGGLSWETTTEKLVDHFKEYGEIIDSVIMKDRGTGHPRGFGFVTYSDPSVIDAVIKDTHTLDGRTVEIKRSIPRESMDLIKGPKTKKLFVGGLPSSVADEELKNYFKKYGNVVESQIMQDHSTGRSRGFAFVTFDSEQTVEEILTLGKAHEFDGKEVEIKKAEPKNSMQD
B8LKC7_______________SSPGKIFIGGLSRETSSATFTKYFSKYGELTDSVIMKDRATGNPRGFGFVTYADPSVVDKVIKDKHFIDGKMVEIKRTIPRGNA-ATKGPKTKKIFVGGIPTSITEDEFKDYFSKFGKVLEHQIMQDHGTGRSRGFGFVTFDSEEAVEEILSHGKMCELGGKQVEIKKAEPKKALPE

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
577	88			11	0.923564
579		85	14		0.993533
939	10		89		0.999919
1030	77		22		1.0
1088		11		88	0.923564
1093	12		87		0.992554
1094	87			12	0.992554
1097	14			85	0.993533
1103	20		80		0.995493
1108	80	20			0.995493
1112	20			80	0.995493
1113	25		75		0.996473
1121	75			25	0.996473
1125	25		75		0.996473
1127	75	25			0.996473
1128		25		75	0.996473
1129	75		25		0.996473
1130	25			75	0.996473
1134	25		75		0.996473
1135		66	33		0.997452
1136		33		66	0.997452
1139	33		66		0.997452
1140	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain