SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6697

Length: 1713 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6697

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucoronosyl/UDP-glucosyl transferase family protein	-	-	0.0	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	Pentatricopeptide repeat-containing protein At1g05665, mitochondrial	-	-	5.848e-06	-

Source	Gene names
Sma3	At1g05665; F3F20.12; GSVIVT00028954001;

Source	GOs	Term	Type	e value	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAH0

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 152 aas, putative chimeric sequence, your sequence is shorter than subject: 159 - 486

Fln protein: CRTYGRAGMLQETLRLFSAMPDPPNVLAFNAVLDILCQNGEWQMAHSLYLENVGSRIATPNSDTFNILIKALLGANKVDAALNMLGLMSENGCTPDEKTYGLIVGGLCQHGRLQQALELIDDMYSKGCPPNSHHLQPLSYRHFAKRVTWSTPASFSLK*

Protein Length: 160

Fln nts: AATGTCGAACATACGGCAGAGCCGGGATGTTGCAGGAAACCCTCCGCCTCTTCTCAGCAATGCCGGATCCCCCCAACGTCCTTGCCTTCAACGCCGTCCTCGACATTCTTTGCCAAAATGGAGAGTGGCAGATGGCCCACTCTCTGTACCTCGAGAATGTGGGATCCCGCATAGCGACCCCAAATTCTGATACTTTCAACATCCTGATAAAGGCCCTCCTTGGGGCCAACAAAGTCGATGCCGCGCTTAACATGCTAGGGCTTATGTCTGAGAATGGGTGCACTCCCGACGAGAAAACCTACGGGCTCATTGTTGGCGGCCTCTGCCAACATGGGAGATTACAGCAAGCACTCGAGCTCATCGACGACATGTATTCTAAAGGCTGCCCGCCGAATAGCCATCACTTACAACCACTTTCATACAGGCATTTTGCAAAGAGGGTAACATGGTCGACGCCCGCAAGCTTCTCACTCAAATGA___AGCTCTACGCGGCCAAGCCCGACACCGTCACTTACACTGCCCTCATTAATGGCTATTGTCAGACGGGGAACTTCGAGCAGGCCGACAGAATGCTGGACGAGATGCTGGCGATGGGATGCGTGCCAGATGTCTTCACTTATACGACTCGCATCAGTGCCCTTTGCAAACAAGGTAAGCTTTCTGAAGCCCTTCAAACCCTAGAATCTATGCAGGGCTGCAAACCTAATGTGGTTACTTATAATGCCCTCATCACGGCCTTCTGTAAAGAAGGGAAGGCCAATAAAGCGGCCGAGCTTGTGAATGAGATGATGAAATCTGCTGGGGTTTTGCCAAATGTGGTTACTTACAGAACCCTTGTGGATGGGTTCTGCAAGGAAGATAATTTCTGTAAAGCCAACGAAGTTCTGGGAGAGATGTTAGAGAAAGGATTCGTTCCGCATATTGAAACATTTAACTCTTTGCTTAATGGTCTCTGTAAACATGAAATGGTAGGTCAGGTGTCGAGGGTTCTATATGAAATGGGTAACAGAGGCTTTGCTCCCAAGGATTCCACTTGGAACACGCTAATTAGAACATTATGTGAACCGCTCGATCGAAGCCAAACTATTAACGAACTGCAAATAATCACTAGCTGATATATAACCACGCTAGCCGCTGTGCAAATATGATTATGTTCCTTTGTTATCTTTCAAGGGAAGGGAGTGGGACTGTTATGATCCAGTCGGAAAAGGTTCCATCTATATTCGGTTGCAGCAGGGAAGTTTTTGGTTCTGGACATCATTTTCATGTTCTTTCAGATAAACTGAAAGTTCCGCAGATCCAAGAAAGTTTGTAGCTGCTAGTCCTTCGAAGTTGAAATACTGGAACTTTCTCAATGAGACCATTGCCATGGTGCAGCTTTTTATTATGATGATCAATTATGGGTTGTGATAAGTTGTTGCCAAAGGAATTACAAGGAAAACTGACATTCCTTCCGTAAAGCCATTCCCTTAAAATAGGTCTTTATTTGTATGCACCTGGAGAAAAAGAAAATGTGAATATGTCACAAGTAAAGGCTTACTGGCGCTGATTTCTTAATGTGGGTGCCTAGTAATGCCTAATAAGCAGAGTGTTACCATCGAGTCGTTGCTGGTTCAAATATAATAATGTACTCTGTTCGAATGTAACCGATGGGTTCACCAGATTTTTATTGATAAATTCATTTCCGGACTTTTAGAATTATGGTGTCTGAGTA

Fln Alignment:

Contig6697___YGRAGMLQETLRLFSAMPD---PPNVLAFNAVLDILCQNGEWQMAHSLY--LENVGSRIATPNSDTFNILIKALLGANKVDAALNMLGLMSENGCTPDEKTYGLIVGGLCQHGRLQQALELIDDMYSKGCPPNS
D5AAH0______________YGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFG---ISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDA

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1307	75		25		0.996473
1430	11			88	0.923564
1431		11		88	0.923564
1433		88		11	0.923564
1434	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain