SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6364

Length: 933 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6364

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor bHLH30 [Arabidopsis thaliana] sp\|Q9S7Y1.1\|BH030_ARATH RecName: Full=Transcription factor bHLH30; AltName: Full=Basic helix-loop-helix protein 30; Short=AtbHLH30; Short=bHLH 30; AltName: Full=Transcription factor EN 53; AltName: Full=b	-	-	5.0e-40	48%
FL-Next	sp=Transcription factor bHLH30; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	56%
Sma3	DNA binding protein, putative	-	-	1.132e-07	-

Source	Gene names
Sma3	At1g68810; At2g41130; At3g25710; BHLH106; BHLH30; BHLH32; EN53; EN54; EN56; F14K14.8; GSVIVT00015112001; GSVIVT00018717001; GSVIVT00023253001; GSVIVT00029322001; GSVIVT00030280001; GSVIVT00035886001; GSVIVT00037902001; K13N2.1; LOC_Os03g15440; LOC_Os03g59

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G68810.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein chr1:25861289-25862882 FORWARD LENGTH=368	56%
RefSeq	Arabidopsis thaliana	NP_564944.1	transcription factor bHLH30 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002315961.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9S7Y1

Fln msg: Distance to subject end: 50 aas, atg_distance in limit (1-15): atg_distance = 7, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 288 - 368

Fln protein: MQRGEQAGSSMNARGADQDSKMLFPTWPTIAVPSHNVAQGHLEPFQTQVIPGRDQILAAMASEAGSSSSNSFSGFQDLINCGAPLQFSYDYRGGHMMQVPSGLANFSSIDQKSVGDRLFQPVLMSRSALEMSKMTAQEIVEAKALAASKSHSEAERRRRERINNHLATLRSLLPNTTKTDKASLLAEVIDHVRELKRMVDDIGQASPVPSEADEVSLEYPDPNEEGRPVIRASLCCEDRPELLSDLIKTLRSLRLRAVKAEIATLGGRVKNVLVVTSGDSQDPNDVSR

Protein Length: 289

Fln nts: ATCTATTTGAGACGAAGATAAGTTGCCTGGTCTGCTTAACATTCGCGGGCGTGATACGAGAAAGAAG_-_ATGCAGCGTGGCGAACAAGCAGGGAGCTCAATGAACGCCAGGGGGGCGGATCAAGACTCTAAAATGCTGTTTCCAACATGGCCGACGATAGCAGTTCCTTCTCACAACGTAGCACAGGGACATCTTGAGCCGTTCCAGACGCAAGTGATCCCCGGCCGTGACCAGATTCTGGCGGCCATGGCTTCGGAAGCCGGCTCTTCGTCATCTAATTCGTTCTCGGGGTTCCAAGACCTCATTAATTGCGGGGCACCGCTGCAATTTTCCTACGATTATCGTGGCGGCCACATGATGCAGGTCCCCTCGGGCTTGGCGAACTTCAGTTCTATAGACCAGAAGTCCGTCGGGGATCGGCTCTTTCAACCGGTCTTGATGAGCAGATCGGCATTGGAAATGAGCAAAATGACGGCGCAGGAGATCGTGGAAGCCAAGGCCCTTGCGGCGTCCAAGAGCCACAGCGAAGCCGAGCGGAGGCGGCGTGAACGGATTAACAACCATCTTGCCACCCTTCGCAGCTTGCTTCCTAACACAACCAAAACGGACAAAGCTTCTTTGCTGGCAGAGGTCATCGATCATGTTAGAGAGCTGAAACGCATGGTGGACGACATAGGGCAGGCAAGCCCGGTGCCCAGCGAAGCTGACGAAGTAAGCCTAGAATATCCTGATCCGAACGAAGAAGGCAGGCCGGTCATACGCGCTTCCCTGTGCTGCGAAGACCGCCCCGAACTCCTGTCGGATCTCATTAAAACCCTAAGATCACTCCGGCTCCGAGCAGTCAAGGCGGAGATCGCAACCCTCGGCGGTAGGGTGAAGAACGTGTTAGTTGTCACTAGTGGTGACTCACAGGACCCCAACGACGTGAGCCGAAA

Fln Alignment:

Contig6364___LQFSYDYRGGHMMQVPSGLANFSSIDQKSVGDRLFQPVLMSRSA-----LEMSKMTAQEIVEAKALXXXXXXXXXXXXXXXXINNHLATLRSLLPNTTKTDKASLLAEVIDHVRELKRMVDDIGQASPVPSEADEVSLEYPDPNE--EGRPVIRASLCCEDRPELLSDLIKTLRSLRLRAVKAEIATLGGRVKNVLVVTSGDS
Q9S7Y1______________LQFGYEGFGG------ATSAAHHHHEQLRILSEALGPVVQAGSGPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKELKRETSVISETNLVPTESDELTVAFTEEEETGDGRFVIKASLCCEDRSDLLPDMIKTLKAMRLKTLKAEITTVGGRVKNVLFVTGEES

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
453	12		87		0.992554
603	75			25	0.996473
604	75	25			0.996473
605	75			25	0.996473
606	75		25		0.996473
608		25	75		0.996473
609	25		75		0.996473
610	75		25		0.996473
751			80	20	0.995493
753		80	20		0.995493
754		80	20		0.995493
802	20	80			0.995493
803	20		80		0.995493
804		20	80		0.995493
896		33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain