SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5142

Length: 1232 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5142

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperone protein htpG family protein [Arabidopsis thaliana] gb\|AAL32008.1\|AF436826_1 At2g04030/F3C11.14 [Arabidopsis thaliana] gb\|AAD32922.1\| putative heat shock protein [Arabidopsis thaliana] gb\|AAK96633.1\| At2g04030/F3C11.14 [Arabidopsis thaliana] gb\|A	-	-	71%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	50%
Sma3	Heat shock protein 90	-	-	-

Source	Gene names
Sma3	At2g04030; At3g07770; At4g24190; At5g52640; At5g56000; At5g56010; At5g56030; CHLREDRAFT_138117; CHLREDRAFT_154398; CHLREDRAFT_97057; F17A17.11; GSVIVT00012749001; GSVIVT00014401001; GSVIVT00021159001; GSVIVT00029132001; GSVIVT00033437001; GSVIVT0003772600

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	protein secretion	GO:0009306	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	heat acclimation	GO:0010286	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-
Sma3	protein stabilization	GO:0050821	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ribosomal protein L28	IPR001383	-	-
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	Sterile alpha motif domain	IPR001660	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Sterile alpha motif, type 2	IPR011510	-	-
Sma3	Molecular chaperone, heat shock protein, endoplasmin	IPR015566	-	-
Sma3		IPR015706	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G04030.1	CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5 Chaperone protein htpG family protein chr2:1281983-1285909 FORWARD LENGTH=780	71%
RefSeq	Arabidopsis thaliana	NP_178487.1	Chaperone protein htpG family protein [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002311417.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A7YAU9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 491 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 318 - 834

Fln protein: VSYILQGVTSNFYFLWLRNQNVSGLEAFRLSSSSIPGIGSSSRSADAALLSLGSARARTNTGASTTYCPSRPFTSLELCRTAKSGLSKLEQTAGFSAASNLKIKQTIPGIARYETTVAQQETADESVEKHEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDSSLLGNGGELEIRIKADKENGTITLIDTGIGMTKEELVDCLGTIAQSGTAKFLKALRDSKEAGSDSNLIGQFGVGFYSAFLVSDRIVVSTKSPKSDKQYVWEGEADNNSYVIREETNPDSLLPRGTSITLHLKTERQARVL*

Protein Length: 319

Fln nts: GATACTCAGTTTCTCTCCAGTTCGAAGAGGCATCAGAGGTTCTAGGTTTCATACATTTTGCAGGGTGTAACGAGTAATTTTTATTTTCTTTGGCTGAGAAACCAAAATGTATCAGGCCTCGAGGCGTTCCGTCTCAGCAGCAGTTCGATCCCCGGTATTGGTTCGAGCTCTCGCAGCGCCGACGCCGCCTTGCTCTCCCTCGGCTCTGCGAGAGCTCGAACCAATACCGGGGCCAGTACAACCTACTGCCCTTCACGGCCATTTACTTCTTTGGAGTTATGTCGCACTGCGAAATCAGGATTATCAAAGCTTGAGCAGACAGCTGGTTTTTCTGCTGCTTCAAACTTGAAGATAAAGCAAACAATACCTGGCATTGCTAGGTATGAAACCACAGTAGCACAGCAGGAAACGGCAGACGAATCGGTTGAAAAACATGAGTATCAAGCAGAGGTTAGTCGTCTTTTGGATTTGATAGTACACAGCTTGTACAGTCACAAGGAAGTATTCCTCCGTGAGTTAGTCAGTAATGCTAGTGATGCACTGGATAAATTGCGCTTCTTAAGCGTGACAGATTCAAGTCTTCTTGGTAATGGAGGTGAATTAGAGATTCGTATCAAGGCAGACAAGGAGAATGGAACAATTACCTTGATTGATACTGGTATTGGAATGACAAAAGAAGAACTGGTGGATTGCTTGGGAACTATAGCTCAGAGTGGAACCGCTAAGTTTTTGAAAGCTTTGAGGGATAGCAAGGAAGCTGGTTCTGACAGCAATTTGATTGGTCAATTTGGTGTTGGGTTTTATTCAGCTTTTCTGGTCTCTGATCGGATAGTTGTCTCAACAAAGAGCCCAAAGTCTGACAAGCAATACGTGTGGGAAGGAGAAGCAGACAACAACTCATACGTCATAAGGGAGGAGACAAACCCTGATAGTTTGCTTCCAAGAGGAACCAGCATTACTCTACATTTAAAGACTGAAAGACAAGCTCGAGTACTCTGATCCTGAAAGGATTAAGAATCTTGTTAAAAATTATTCACAATTTGTTTCCTTCCCAATATATGTATGGGAGGAGAAGTCTCAGACTGTAGAGGTTGAGGATGACTCAGCTGAAGCAAAAGAGGGTGAAACAGCAAAACCAGAGGGCCAGAAAAAGAAAACTAAGACAGTCACAGAGAAATACTGGGATTGGGAGTTGGCCAATGAGACTCAACCTATTTGGATGCGCAACTCAA

Fln Alignment:

Contig5142___IARYETTVAQQETADESVEKHEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDSSLLGNGG--ELEIRIKADKENGTITLIDTGIGMTKEELVDCLGTIAQSGTAKFLKALRDSKEAGSDSNLIGQFGVGFYSAFLVSDRIVVSTKSPKSDKQYVWEGEADNNSYVIREETNPDSLLPRGTSITLHLKTE
A7YAU9______________VAQRESESISRKTLRANAQKFEFQAEVSRLMDILINSLYSNKDIFLRELISNASDALDKIRFMALTDKNVLGEGDNTRLDIKIKLDKENKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFLEQM----QKGGDLNLIGQLGVGFYSVYLVADHVEVISKN-NDDKQYIWESKAD-GAFAVSEDTENEP-LGRGTEIRLHLKDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain