SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4923

Length: 522 nt

UniGene Fasta

>sp_v3.0_unigene4923
GAGAAGGGATCACTTATTTATCACCGTTGCAGAGGTCCCGTGATAGGGCAACACGAATAAGAAGGTTTCCGAAGGTATCCAACAAAGTTCACAGGCAGAAACAGCAGTATCTAGAGATTGTTAACATGGCTTGCATTGTAGCAGTGAATTCTCCCTCGGTCTTCGGTTCCTGCATGTCCCCTACTGTATACAATTCTGGTATTGAGACATGGGCAGCTTCCCCCAGAAATCCTGGTTTCCAGACGCCCAGGAGCAGCGGCATCCACGCAAATTTTGTGGGGTCTCCGCTGAGGCCTGTTTTGACCATCAGAGACGAGAATATGCTGCGGATTGTGAACAGGAAGAACCCGGAACACAAACATTGCTCTTCCTTTGTCAACGTCCCGGAGGATAATGGTTTGATTGCCCGCAAGTGCCCTTTGCCTCCTCTGAAAAAGGAAACGGCCGCAGAAGCTTGATATTCCGCTGCAGCTGTCGGGCCTAAACGCGCCATGTCCGGCAGTGCAGCTGCCGGAAGAGGTT

Ace file of the UniGene sp_v3.0_unigene4923

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	4.0e-29	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKN4

Fln msg: Overlapping hits, possible frame ERROR between 440 and 433, Distance to subject end: 274 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 174 - 449

Fln protein: EGITYLSPLQRSRDRATRIRRFPKVSNKVHRQKQQYLEIVNMACIVAVNSPSVFGSCMSPTVYNSGIETWAASPRNPGFQTPRSSGIHANFVGSPLRPVLTIRDENMLRIVNRKNPEHKHCSSFVNVPEDNGLIARKCPLPPLxxxxRPQKLDIPLQLSGLNAPCPAVQLPEEV

Protein Length: 175

Fln nts: GAGAAGGGATCACTTATTTATCACCGTTGCAGAGGTCCCGTGATAGGGCAACACGAATAAGAAGGTTTCCGAAGGTATCCAACAAAGTTCACAGGCAGAAACAGCAGTATCTAGAGATTGTTAACATGGCTTGCATTGTAGCAGTGAATTCTCCCTCGGTCTTCGGTTCCTGCATGTCCCCTACTGTATACAATTCTGGTATTGAGACATGGGCAGCTTCCCCCAGAAATCCTGGTTTCCAGACGCCCAGGAGCAGCGGCATCCACGCAAATTTTGTGGGGTCTCCGCTGAGGCCTGTTTTGACCATCAGAGACGAGAATATGCTGCGGATTGTGAACAGGAAGAACCCGGAACACAAACATTGCTCTTCCTTTGTCAACGTCCCGGAGGATAATGGTTTGATTGCCCGCAAGTGCCCTTTGCCTCCTCTGxxxxxxxxxxxxCGGCCGCAGAAGCTTGATATTCCGCTGCAGCTGTCGGGCCTAAACGCGCCATGTCCGGCAGTGCAGCTGCCGGAAGAGGTT

Fln Alignment:

Contig4923___SNKVHRQKQQYLEIVNMACIVAVNSPSVFGSCMSPTVYNSGIETWAASPRNPGFQTPRSSGIHANFVGSPLRPVLTIRDENMLRIVNRKNP----EHKHCSSFVNVPE----DNGLIAR-KCPLPPLxxxRPQKLDIPLQLSGLNAP-CPAVQLPEEV
B8LKN4______________STQSHHHHHQ-LQLVNMACIVAGNSPSVLSSCRSPSLHDSEIEICAGSPRNHGFQTPRSGGIQSSFVGSRLRPVLAIRDENLLWSEGGKSPVKKLQQRAVALCVNIPEEKSPDNDSISGCKGPSPPLxxxRPPRLDIPLQLPGLEAQYAAAVEQPMEV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain