SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4917

Length: 513 nt

UniGene Fasta

>sp_v3.0_unigene4917
GAGGCTTGGATTATAGAGGAAGTTGCATTCAATGTGCCTGGATTGTCCCTGGATTGCTTTATCCCTCCAGCAGACATAATATGTGGTATGTGGAGCTCGCAGTTGGAGGCAGCAAAGTGCATGCAGGGAGCAATGGGAAGCTGGTTTGGAGACACACGCCATGAGTTAACATGCAGATAATAAACCTTCACAGGCTGTGTCTCAGGGCTGGTGAATGTTTATACGTTGAATGCAGAAACTCTGGATAATTATGTTGGGCTGGATGTTGAACTCTTTCAAGCAGTGTACAATATCTGAGACATATAACTCTTTGTTTACTCACAGCTAATCCTATATGGAAGGAAATTGGTAACGTTGGCATAAATGTCCACATCGACAAATAACTGTGCTGCCCACATTTTTCAAATTTCTTGAAGGTGTATATGTTTGCTAAGCAGGCTTTCCATTTCTCAAAAGTTTTTCGAGTTTGATCTTTCCTTCAGGTAATGGGCCAGTTTGTGCAGTGTAGTTAGT

Ace file of the UniGene sp_v3.0_unigene4917

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipase-like protein n=3 Tax=Oryza sativa RepID=Q6ZLH2_ORYSJ	-	-	2.0e-08	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Lipase, putative, expressed	-	-	2.366e-08	-

Source	Gene names
Sma3	At1g49840; At3g19540; F10F5.2; GSVIVT00007727001; GSVIVT00014926001; LOC_Os03g40930; LOC_Os12g39160; MtrDRAFT_AC158501g13v2; OJ1174_G05.24; Os03g0606100; Os03g40930; Os07g0591100; Os12g0581300; OsI_12556; OsI_26696; OsI_38888; OsJ_11686; OsJ_24954; OsJ_36

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF620	IPR006873	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002298760.1	predicted protein [Populus trichocarpa]	2.0e-11	92%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUK6

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 81 and 78, query STOP codon too far from subject stop. Distance to subject end: 33 aas, putative chimeric sequence, your sequence is shorter than subject: 55 - 417

Fln protein: EAWIIEEVAFNVPGLSLDCFIPPADxxxWYVELAVGGSKVHAGSNGKLVWRHTP*

Protein Length: 56

Fln nts: GAGGCTTGGATTATAGAGGAAGTTGCATTCAATGTGCCTGGATTGTCCCTGGATTGCTTTATCCCTCCAGCAGACxxxxxxxxxTGGTATGTGGAGCTCGCAGTTGGAGGCAGCAAAGTGCATGCAGGGAGCAATGGGAAGCTGGTTTGGAGACACACGCCATGAGTTAACATGCAGATAATAAACCTTCACAGGCTGTGTCTCAGGGCTGGTGAATGTTTATACGTTGAATGCAGAAACTCTGGATAATTATGTTGGGCTGGATGTTGAACTCTTTCAAGCAGTGTACAATATCTGAGACATATAACTCTTTGTTTACTCACAGCTAATCCTATATGGAAGGAAATTGGTAACGTTGGCATAAATGTCCACATCGACAAATAACTGTGCTGCCCACATTTTTCAAATTTCTTGAAGGTGTATATGTTTGCTAAGCAGGCTTTCCATTTCTCAAAAGTTTTTCGAGTTTGATCTTTCCTTCAGGTAATGGGCCAGTTTGTGCAGTGTAGTTAGT

Fln Alignment:

Contig4917___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
A9NUK6______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain