SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4859

Length: 396 nt

UniGene Fasta

>sp_v3.0_unigene4859
CGTCGTGACCTTGGCTGTCACTCATTTGGCTCCATAGCTTTGATTATGGCGTTGCAGTGTTTGTTTTCATATACATATCCTTCTAATTCAAAGGCTCAACAATCCACTGCTTCCCGAAAGCGTCCACTCGAAGCAGACTCAGACTCACAAGAAGAGTGTATTGATCTTCAAGAAATAGTATGGCGAGATGTGGATCAAATGAAGACTGTTAAGACCAAAGAAAGCCAGATAGTCGCAGAACAGTTACGTAGGAAACAAATGAATTACTTGTGTACACAACTGGAGTCTCTCTTGCCCACTACTCCTCCCAAGGTAATTACAACATTACATGCCTTCCACGACTCATACTGTATCTATATCAAACTGTAACATCGCAGGTGATTGCTTTAAGCTTTT

Ace file of the UniGene sp_v3.0_unigene4859

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	2.0e-17	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001092	-	0.0	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYK8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 99 aas, your sequence is shorter than subject: 108 - 228

Fln protein: MALQCLFSYTYPSNSKAQQSTASRKRPLEADSDSQEECIDLQEIVWRDVDQMKTVKTKESQIVAEQLRRKQMNYLCTQLESLLPTTPPKVITTLHAFHDSYCIYIKL*

Protein Length: 109

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGGCTCCATAGCTTTGATT_-_ATGGCGTTGCAGTGTTTGTTTTCATATACATATCCTTCTAATTCAAAGGCTCAACAATCCACTGCTTCCCGAAAGCGTCCACTCGAAGCAGACTCAGACTCACAAGAAGAGTGTATTGATCTTCAAGAAATAGTATGGCGAGATGTGGATCAAATGAAGACTGTTAAGACCAAAGAAAGCCAGATAGTCGCAGAACAGTTACGTAGGAAACAAATGAATTACTTGTGTACACAACTGGAGTCTCTCTTGCCCACTACTCCTCCCAAGGTAATTACAACATTACATGCCTTCCACGACTCATACTGTATCTATATCAAACTGTAACATCGCAGGTGATTGCTTTAAGCTTTT

Fln Alignment:

Contig4859___MALQCLFSYTYPSNSKAQQS------------TASRKRPLEADSDSQEECIDLQEIVWRDVDQMKTVKTKESQIVAEQLRRKQMNYLCTQLESLLPTTPPKV
A9NYK8______________MASDCLFSYSFPASRTVYSNVAQCDRQVDCRVTSSRKRPSEVDLADSQDYNDLQEKVWRDVDRMMEFSSKESQTLAEQLRRKRMKSLCTQLESLLPATPAKL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain