SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4802

Length: 488 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene4802
AAATGGCCAGCGAGCGCCAGAACTTCGAGCTTTCGGGCCCTCGCCATCTCGGTAACATCGACTGGTAAGAATTCAGACGAACTACTGCAATCTCTGCGAATTTCTGTTCACTGATTGATATGTTGAATGCTTCTGATAATAAATCTGATTGTGATTCTCCGTTTTGTCCAAATACAGGCAGGATTCGAATCACAGGCGTTGTGTAGCGGCCAGTTTGGTGCGGGGCGTGTACATCCAGGAACGCGATCGGCAAGCTCGCAGGCTCGGCCAGGACGCCCTAGCAGAGAGGTGGTGGAGGTTTTTCAACTTCAAGGTCCTTCACCCGCTGATCGACGTAGCCGACGGCGGCTCTATCTTCGGTGCCGTGTACAAGTGGAGCAGAAAGGCAGCAGGCTCCCCTTTCCGCCCACTCGGCGCGCCCAGGATCGTGGTAGCCTTTAGAGGAACAATTACCGAACCGGAACTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v3.0_unigene4802 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha/beta-hydrolase domain-containing protein n=3 Tax=Arabidopsis RepID=Q9SJ35_ARATH	-	-	5.0e-20	47%
FL-Next	sp=GDSL esterase/lipase At4g10955; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%

Source	Gene names
Sma3	OsI_03541; OsJ_03277; P0690B02.1; POPTRDRAFT_751199;

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G05260.1	alpha/beta-Hydrolases superfamily protein chr2:1918730-1919893 FORWARD LENGTH=358	4.0e-22	47%
RefSeq	Arabidopsis thaliana	NP_565323.1	alpha/beta-hydrolase domain-containing protein [Arabidopsis thaliana]	6.0e-22	47%
RefSeq	Populus trichocarpa	XP_002299467.1	predicted protein [Populus trichocarpa]	3.0e-23	52%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q680C0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 187 aas, atg_distance in limit (1-15): atg_distance = 2, your sequence is shorter than subject: 22 - 350

Fln protein: MASERQNFELSGPRHLGNIDW*

Protein Length: 23

Fln nts: AA_-_ATGGCCAGCGAGCGCCAGAACTTCGAGCTTTCGGGCCCTCGCCATCTCGGTAACATCGACTGGTAAGAATTCAGACGAACTACTGCAATCTCTGCGAATTTCTGTTCACTGATTGATATGTTGAATGCTTCTGATAATAAATCTGATTGTGATTCTCCGTTTTGTCCAAATACAGGCAGGATTCGAATCACAGGCGTTGTGTAGCGGCCAGTTTGGTGCGGGGCGTGTACATCCAGGAACGCGATCGGCAAGCTCGCAGGCTCGGCCAGGACGCCCTAGCAGAGAGGTGGTGGAGGTTTTTCAACTTCAAGGTCCTTCACCCGCTGATCGACGTAGCCGACGGCGGCTCTATCTTCGGTGCCGTGTACAAGTGGAGCAGAAAGGCAGCAGGCTCCCCTTTCCGCCCACTCGGCGCGCCCAGGATCGTGGTAGCCTTTAGAGGAACAATTACCGAACCGGAACTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig4802___MASERQNFELSGPRHLGNIDW
Q680C0______________MISERDDFSLTGPLHLTSIDW

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
115	60		40		1.0
116		80		20	0.995493
168	20			80	0.995493
171	80	20			0.995493
175		40	60		1.0
191		80	20		0.995493
200		88		11	0.923564
201	11	55		33	1.0
219		11		88	0.923564
226		11	88		0.923564
230	22		77		0.999999
232		11	88		0.923564
233	88		11		0.923564
242	88		11		0.923564
252		11		88	0.923564
257	22		77		0.999999
258		11		88	0.923564
266		88		11	0.923564
267		88		11	0.923564
272	11	88			0.923564
274	88		11		0.923564
281	11	88			0.923564
290	88		11		0.923564
326	66			33	1.0
332	33		66		1.0
334	66		33		1.0
337	66		33		1.0
338	33	66			1.0
340	66		33		1.0
369		50		50	1.0
372	50	50			1.0
394	66		33		0.997452
451		33	66		0.997452
459	33		66		0.997452
474			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain