SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4784

Length: 216 nt

UniGene Fasta

>sp_v3.0_unigene4784
GATCCCAAGTTCCAGATTGCTGAAGGAGGAAAAAGAATGGAACTGCCTGATGCCGGTTTCGCTAAGCTGAAGGGGGAAGATTTCGAGTTCTACATGCAGAGCTACTCGATAACTACTCGGCAGGAAAAGGCAGGAGCTCGTACTGTTGACGTCGATTTGTTCTCCCTCGGCGGCGGTATGAACATTTCCCGTTTACACGCGAGGATTTACTATGAT

Ace file of the UniGene sp_v3.0_unigene4784

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SMAD/FHA domain-containing protein n=4 Tax=Arabidopsis RepID=Q9SFV2_ARATH	-	-	1.0e-13	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Transcriptional activator FHA1	-	-	5.586e-10	-

Source	Gene names
Sma3	At3g07220; At3g07220/T1B9_11; At3g07260; FHA1; GSVIVT00010539001; OJ1770_H02.14; Os08g0528900; OsI_29998; PHYPADRAFT_202545; PHYPADRAFT_233215; POPTRDRAFT_711559; RCOM_1750020; T1B9.11; T1B9.7; VITISV_024921;

Source	InterPros	Term	Type	e value	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	0.0	-
Sma3	TonB box, conserved site	IPR010916	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G07220.1	SMAD/FHA domain-containing protein chr3:2297968-2299407 FORWARD LENGTH=320	4.0e-19	67%
RefSeq	Arabidopsis thaliana	NP_187378.1	SMAD/FHA domain-containing protein [Arabidopsis thaliana]	6.0e-19	67%
RefSeq	Populus trichocarpa	XP_002301800.1	predicted protein [Populus trichocarpa]	2.0e-15	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV2

Fln msg: Distance to subject end: 267 aas, your sequence is shorter than subject: 60 - 326

Fln protein: MELPDAGFAKLKGEDFEFYMQSYSITTRQEKAGARTVDVDLFSLGGGMNISRLHARIYYD

Protein Length: 61

Fln nts: GATCCCAAGTTCCAGATTGCTGAAGGAGGAAAAAGA_-_ATGGAACTGCCTGATGCCGGTTTCGCTAAGCTGAAGGGGGAAGATTTCGAGTTCTACATGCAGAGCTACTCGATAACTACTCGGCAGGAAAAGGCAGGAGCTCGTACTGTTGACGTCGATTTGTTCTCCCTCGGCGGCGGTATGAACATTTCCCGTTTACACGCGAGGATTTACTATGAT

Fln Alignment:

Contig4784___MELPDAGFAKLKGEDFEFYMQSYSITTRQEKAGARTVDVDLFSLGGGMNISRLHARIYYD
B8LKV2______________MEQPDAGFAKLKGEDFEFYMQSYSITLGR-KGRSSSVDVDLFSLGGGMNISRLHARIYYD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain