SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4616

Length: 308 nt

UniGene Fasta

>sp_v3.0_unigene4616
AATGTATGGAGACAACGGCCATTACCTTAGAATGGGCAATGAGTGAGCTGCTCAGACATCCCTATGCAATGAAGAGGTTGCAGGAAGAAATTGAATGTACAGTTGGAAAACATGCCAAAGTTAGGGAGTCAGAAGTAGCAAGCATGAAATACCTCCAAAAGTGTGGTCAGAGAGACGTTACGATTATACCCAGGAGGGCCGCTAGGCGTTCCCCATGAATCTGCAGAGGGCGTTACAGTAGGAGAATATCATATACCTAAAAAGACAATGTTATTGGTAAATCTGTGGGCGATAGGAAGGGATCCTAA

Ace file of the UniGene sp_v3.0_unigene4616

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome P450 family protein [Musa acuminata]	-	-	3.0e-20	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%

Source	Gene names
Sma3	GSVIVT00035441001; IhCYP-1; IhFNSII; RCOM_1588520; TCP1; VITISV_000532;

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G07990.1	TT7, CYP75B1, D501 Cytochrome P450 superfamily protein chr5:2560437-2562859 FORWARD LENGTH=513	1.0e-20	48%
RefSeq	Arabidopsis thaliana	NP_196416.1	Flavonoid 3'-monooxygenase [Arabidopsis thaliana]	2.0e-20	48%
RefSeq	Populus trichocarpa	XP_002310011.1	predicted protein [Populus trichocarpa]	2.0e-22	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLW0

Fln msg: Overlapping hits, possible frame ERROR between 158 and 157, Distance to subject end: 99 aas, your sequence is shorter than subject: 102 - 512

Fln protein: CMETTAITLEWAMSELLRHPYAMKRLQEEIECTVGKHAKVRESEVASMKYLxxSVVRETLRLYPGGPLGVPHESAEGVTVGEYHIPKKTMLLVNLWAIGRDP

Protein Length: 103

Fln nts: AATGTATGGAGACAACGGCCATTACCTTAGAATGGGCAATGAGTGAGCTGCTCAGACATCCCTATGCAATGAAGAGGTTGCAGGAAGAAATTGAATGTACAGTTGGAAAACATGCCAAAGTTAGGGAGTCAGAAGTAGCAAGCATGAAATACCTCxxxxxxAGTGTGGTCAGAGAGACGTTACGATTATACCCAGGAGGGCCGCTAGGCGTTCCCCATGAATCTGCAGAGGGCGTTACAGTAGGAGAATATCATATACCTAAAAAGACAATGTTATTGGTAAATCTGTGGGCGATAGGAAGGGATCCTAA

Fln Alignment:

Contig4616___ETTAITLEWAMSELLRHPYAMKRLQEEIECTVGKHAKVRESEVASMKYLxSVVRETLRLYPGGPLGVPHESAEGVTVGEYHIPKKTMLLVNLWAIGRDP
B8LLW0______________DTASTTIEWAMSEVIRNPPVLKKLQDEMGRVVGVGRMVRESDLPSLVYLxAVVKETFRLHPPAPLAIPHISVEDCTVLGYEIPRGTCLLINVWAIGRNP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain