SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4612

Length: 344 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene4612
GTCCTCCTCATTCTTCCTCTTGCCTTGTTATCACCATTTCCTGCTGGTATCAACGCTCTATTCAGTCATGGACACCGGAGATCAGCAGGTCTTGCTCGTGTCTATGCATTGTGGAATGTAACATCTCTTGTTAATGTCGTGGTAGCTTTGATCTGTGCATTTTTGCATTACAGACTCCAGTCTTCCTCTTATGGCGGGATGCAAAGTTTTCGTTCATCAAATACCATGACAGATCACCAAATAAAAACTACTGTGTCATTTTCTGTGGAGGAAGGAGGATGGTGGATTTTCCCAACAGCGCTTTTACTTTGTAAATGTGTACAAGCTCGCATGGTAGATACATT

Ace file of the UniGene sp_v3.0_unigene4612 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Zea mays (Maize).	-	-	0.0	55%

Source	Gene names
Sma3	AT4g32920; At4g32920; At5g11700; GSVIVT00015837001; GSVIVT00016629001; GSVIVT00032139001; OJ1111_A10.12; Os01g0187400; Os05g0185600; OsI_00705; OsI_18735; OsJ_00683; OsJ_17377; P0512G09.9; P0695A04.18; PHYPADRAFT_144873; PHYPADRAFT_191568; POPTRDRAFT_2646

Source	GOs	Term	Type	e value	Identity
Sma3	vacuole	GO:0005773	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G32920.1	glycine-rich protein chr4:15888153-15896006 REVERSE LENGTH=1432	2.0e-25	51%
RefSeq	Arabidopsis thaliana	NP_001190893.1	glycine-rich protein [Arabidopsis thaliana]	2.0e-25	51%
RefSeq	Populus trichocarpa	XP_002308587.1	predicted protein [Populus trichocarpa]	1.0e-28	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C0PLL2

Fln msg: Distance to subject end: 22 aas, your sequence is shorter than subject: 114 - 369

Fln protein: VLLILPLALLSPFPAGINALFSHGHRRSAGLARVYALWNVTSLVNVVVALICAFLHYRLQSSSYGGMQSFRSSNTMTDHQIKTTVSFSVEEGGWWIFPTALLLCKCVQARMVDT

Protein Length: 115

Fln nts: GTCCTCCTCATTCTTCCTCTTGCCTTGTTATCACCATTTCCTGCTGGTATCAACGCTCTATTCAGTCATGGACACCGGAGATCAGCAGGTCTTGCTCGTGTCTATGCATTGTGGAATGTAACATCTCTTGTTAATGTCGTGGTAGCTTTGATCTGTGCATTTTTGCATTACAGACTCCAGTCTTCCTCTTATGGCGGGATGCAAAGTTTTCGTTCATCAAATACCATGACAGATCACCAAATAAAAACTACTGTGTCATTTTCTGTGGAGGAAGGAGGATGGTGGATTTTCCCAACAGCGCTTTTACTTTGTAAATGTGTACAAGCTCGCATGGTAGATACATT

Fln Alignment:

Contig4612___SPFPAGINALFSHGHRRSAGLARVYALWNVTSLVNVVVALICAFLHYRLQSSSYGGMQSFRSSNTMTDHQIKTTVSFSVEEGGWWIFPTALLLCKCVQARMVD
C0PLL2______________SPFPAGINALFSHGPRRSAGLARVYALWNITSLVNVVVAFICGFVHYKSSTKTHPSVQPW---------------NLGTDESSWWLFPTGLMVLKCIQARLVD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain