SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4564

Length: 425 nt

UniGene Fasta

>sp_v3.0_unigene4564
ATGGGGGAGCAATTCAGACATACTATTAGCAATGGAGGGGCGTGTTAATGTTTGTATTGTCGCATGTCTCAGTATTTTCCTCGCTCTGCGTGAAACACATTTAACGTAAGCAGATACAAAGGCCACAAGGCCTTTGGTGCCGGCCGTGTACATATTTGGAGATTCTACCGTAGACCCTGGTAATAACAATGCACTTGCAACGGTTGCGAAGGCCAACTTCCCTCCATATGGGAAAGATTTCGTAGATCATAAACCCAGTGGTCGATTTACCAACGGAAAATTAGTAACTGATATACTTTCTCGATTAGCAGGCCTTCCGGATATGGTGCCCGCATATTTGGATCCTGAATTCCATGGACAACGAATTCTGACAGGCGCCAGCTTTGCTTCTTCTAGTGCTGGATACGATGATGCGACCTCGCTCA

Ace file of the UniGene sp_v3.0_unigene4564

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Zinc finger protein, putative	-	-	1.379e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on ester bonds, Carboxylic ester hydrolases.	EC:3.1.1.-	-	6.029e-30	-

Source	KEGGs	Term	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053	6.029e-30	%
Sma3	Bisphenol degradation	00363	6.029e-30	%
Sma3	Glycerophospholipid metabolism	00564	6.029e-30	%
Sma3	Toluene degradation	00623	6.029e-30	%
Sma3	Aminobenzoate degradation	00627	6.029e-30	%
Sma3	Retinol metabolism	00830	6.029e-30	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	6.029e-30	%

Source	Gene names
Sma3	APG; At1g20132; At1g58430; At2g04570; At2g24560; At2g30220; At2g31540; At2g31550; At2g40250; At2g42990; At3g16370; At3g53100; At4g26790; At5g03810; At5g03820; At5g22810; At5g45960; B1274F11.19-1; B1274F11.19-2; B1370C05.17; F10M23.130; F23E6.2; F25P17.14;

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	lipase activity	GO:0016298	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G04570.1	GDSL-like Lipase/Acylhydrolase superfamily protein chr2:1594747-1596129 FORWARD LENGTH=350	2.0e-33	55%
RefSeq	Arabidopsis thaliana	NP_178536.1	GDSL esterase/lipase [Arabidopsis thaliana]	3.0e-33	55%
RefSeq	Populus trichocarpa	XP_002331949.1	predicted protein [Populus trichocarpa]	5.0e-33	52%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLX0

Fln msg: Distance to subject end: 228 aas, your sequence is shorter than subject: 131 - 359

Fln protein: MEGRVNVCIVACLSIFLALRETHLT*ADTKATRPLVPAVYIFGDSTVDPGNNNALATVAKANFPPYGKDFVDHKPSGRFTNGKLVTDILSRLAGLPDMVPAYLDPEFHGQRILTGASFASSSAGYDDATSL

Protein Length: 132

Fln nts: ATGGGGGAGCAATTCAGACATACTATTAGCA_-_ATGGAGGGGCGTGTTAATGTTTGTATTGTCGCATGTCTCAGTATTTTCCTCGCTCTGCGTGAAACACATTTAACGTAAGCAGATACAAAGGCCACAAGGCCTTTGGTGCCGGCCGTGTACATATTTGGAGATTCTACCGTAGACCCTGGTAATAACAATGCACTTGCAACGGTTGCGAAGGCCAACTTCCCTCCATATGGGAAAGATTTCGTAGATCATAAACCCAGTGGTCGATTTACCAACGGAAAATTAGTAACTGATATACTTTCTCGATTAGCAGGCCTTCCGGATATGGTGCCCGCATATTTGGATCCTGAATTCCATGGACAACGAATTCTGACAGGCGCCAGCTTTGCTTCTTCTAGTGCTGGATACGATGATGCGACCTCGCTCA

Fln Alignment:

Contig4564___MEGRVNVCIVACLSIFLALRETHLT*ADTKATRPLVPAVYIFGDSTVDPGNNNALATVAKANFPPYGKDFVDHKPSGRFTNGKLVTDILSRLAGLPDMVPAYLDPEFHGQRILTGASFASSSAGYDDATSL
A9NLX0______________MEWRLKLCIVTYLNIFLALSEPKLTYAKSKATKPLVTAMYIFGDSTVDPGNNNGLETIAKANFPPYGRDFIGRKPSGRFTNGKLVTDIISGLAGLPDIVPAYLDPEFRGPRILTGASFASAGSGYDDITPL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
193		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain