SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4532

Length: 496 nt

UniGene Fasta

>sp_v3.0_unigene4532
ATGGGGAGTTGGGTAACAGTTGAGACATGGGGATTCTCGTTCAATCCCCTCCCATTGCGGCGCTTCCTCTAAACTCCAACCTTCAAATTACTCAATCAATATTTAAATCATTACCGTATTCCTATGCGCTTGCTAGCTGCAGTTGCACTCCAAAGTTTGAATTACAGAACAAAAGGGTTCGAGCCGGAACGACGACAACAAGGCGTGCCGGTGGAAATGGGGGAAGTCTGGACACTGACGAGGAGTCGAGATTCTTGGAACAGGATGGAAGTATCAGAGACATGGATGGATACTTAAATCACCTCTCTTTAGAATACGAGTCTGTCTGGGACACCAAGCCTGCCTGGTGCCAGCCATGGACAATCTGCCTCACAGGAGTTATAGCAACTAGTGGCAGCTGGATTATCTTCCAATCAATAGCATTGACCACAATTATTGCATGTTTGGTTGGTGCTTGGTGGTACATATTTTTATACTCATATCCACAGGCCTATAC

Ace file of the UniGene sp_v3.0_unigene4532

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%

Source	Gene names
Sma3	At4g02725; GSVIVT00023729001; OsI_13170; PHYPADRAFT_8384; POPTRDRAFT_714983; RCOM_0557330; VITISV_024138;

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF868, plant	IPR008586	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02725.1	" unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991;	7.0e-35	55%
RefSeq	Arabidopsis thaliana	NP_974503.1	uncharacterized protein [Arabidopsis thaliana]	9.0e-35	55%
RefSeq	Populus trichocarpa	XP_002307589.1	predicted protein [Populus trichocarpa]	1.99993e-41	63%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS36

Fln msg: Distance to subject end: 24 aas, your sequence is shorter than subject: 156 - 189

Fln protein: MGILVQSPPIAALPLNSNLQITQSIFKSLPYSYALASCSCTPKFELQNKRVRAGTTTTRRAGGNGGSLDTDEESRFLEQDGSIRDMDGYLNHLSLEYESVWDTKPAWCQPWTICLTGVIATSGSWIIFQSIALTTIIACLVGAWWYIFLYSYPQAY

Protein Length: 157

Fln nts: ATGGGGAGTTGGGTAACAGTTGAGAC_-_ATGGGGATTCTCGTTCAATCCCCTCCCATTGCGGCGCTTCCTCTAAACTCCAACCTTCAAATTACTCAATCAATATTTAAATCATTACCGTATTCCTATGCGCTTGCTAGCTGCAGTTGCACTCCAAAGTTTGAATTACAGAACAAAAGGGTTCGAGCCGGAACGACGACAACAAGGCGTGCCGGTGGAAATGGGGGAAGTCTGGACACTGACGAGGAGTCGAGATTCTTGGAACAGGATGGAAGTATCAGAGACATGGATGGATACTTAAATCACCTCTCTTTAGAATACGAGTCTGTCTGGGACACCAAGCCTGCCTGGTGCCAGCCATGGACAATCTGCCTCACAGGAGTTATAGCAACTAGTGGCAGCTGGATTATCTTCCAATCAATAGCATTGACCACAATTATTGCATGTTTGGTTGGTGCTTGGTGGTACATATTTTTATACTCATATCCACAGGCCTATAC

Fln Alignment:

Contig4532___MGILVQSPP-IAALPLNSNLQITQSIFKSLPYSY-------ALASCSCTPKFELQNKXXXXXXXXXXXXXXXXXSLDTDEESRFLEQDGSIRDMDGYLNHLSLEYESVWDTKPAWCQPWTICLTGVIATSGSWIIFQSIALTTIIACLVGAWWYIFLYSYPQAY
A9NS36______________MGILIQSPTSIAALTLNSGLQIPQSLLKALPYSYSHSSPLSALAICNCTPNLVLQSKRVRSGTTTIRSANGNGGGQDTDEESRFLEQDGSIRDMDGYLNNLSLEYESVWDTKPAWCQPWTIFLTGVLATSGSWIVFQSITLTTIVACLIGAWWYIFLYSYPQAY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
422		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain