SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4491

Length: 555 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene4491
CGTTTCTACTGCTTCTCGCTTCAGTGTAAATGTTTTTTCTGTCTACTAGAGTGGAGGGGTATTTCAAACCATTTCGGTTCTGGCAGGCCTGGTTCTGCCCACTATCTATGCAGACGCTGAGGAACCGATACAGATAGTGTTAAATTTTCCTACAGGATGGATCAGAAGCTCGCCAAATACTTCCTATTGCTGAGGGAAGAGGCGGAGGCCGGGCGCAGGGGTGCCTCTACGGAGGTTTCGGATATTATAGCCGACATTTCAAGACTTACTTCGGATTTGGTGGAGGAAAGGGATATTGCCTTTGCAGTTGCAGCAGTATTCGATGAAGAGTCGGGGGTTTTGAGTTCAGTAGAAATAATGCTGCCGTCTCGGGACAGGGCTATTCAGAAAGCTCGCGACAGTTGTCTCACATTCCTCGCCCAATTCATAAACCGTATCGGCAAGCGTGCTTTGCCATATGCCTCTCTAGTCAAGGATAGATGTTTGAGTATCTTCAGGAGAGAGGATTCAGGATCAGTGCAAGCTGCTGCATTGGCTCCGCTGCTGTCAATTTTG

Ace file of the UniGene sp_v3.0_unigene4491 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-dependent protein kinase subunit [Dictyostelium discoideum AX4] sp\|Q54UC0.2\|PRKDC_DICDI RecName: Full=DNA-dependent protein kinase catalytic subunit; Short=DNA-PK catalytic subunit; Short=DNA-PKcs gb\|EAL66880.2\| DNA-dependent protein kinase subunit [D	-	-	4.0e-06	31%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	44%

Source	Gene names
Sma3	PHYPADRAFT_233442;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-dependent protein kinase activity	GO:0004677	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	double-strand break repair via nonhomologous end joining	GO:0006303	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	NUC194	IPR012582	-	-
Sma3	PIK-related kinase	IPR014009	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SH90

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 3957 aas, your sequence is shorter than subject: 185 - 4165

Fln protein: RFYCFSLQCKCFFCLLEWRGISNHFGSGRPGSAHYLCRR*GTDTDSVKFSYRMDQKLAKYFLLLREEAEAGRRGASTEVSDIIADISRLTSDLVEERDIAFAVAAVFDEESGVLSSVEIMLPSRDRAIQKARDSCLTFLAQFINRIGKRALPYASLVKDRCLSIFRREDSGSVQAAALAPLLSIL

Protein Length: 186

Fln nts: CGTTTCTACTGCTTCTCGCTTCAGTGTAAATGTTTTTTCTGTCTACTAGAGTGGAGGGGTATTTCAAACCATTTCGGTTCTGGCAGGCCTGGTTCTGCCCACTATCTATGCAGACGCTGAGGAACCGATACAGATAGTGTTAAATTTTCCTACAGGATGGATCAGAAGCTCGCCAAATACTTCCTATTGCTGAGGGAAGAGGCGGAGGCCGGGCGCAGGGGTGCCTCTACGGAGGTTTCGGATATTATAGCCGACATTTCAAGACTTACTTCGGATTTGGTGGAGGAAAGGGATATTGCCTTTGCAGTTGCAGCAGTATTCGATGAAGAGTCGGGGGTTTTGAGTTCAGTAGAAATAATGCTGCCGTCTCGGGACAGGGCTATTCAGAAAGCTCGCGACAGTTGTCTCACATTCCTCGCCCAATTCATAAACCGTATCGGCAAGCGTGCTTTGCCATATGCCTCTCTAGTCAAGGATAGATGTTTGAGTATCTTCAGGAGAGAGGATTCAGGATCAGTGCAAGCTGCTGCATTGGCTCCGCTGCTGTCAATTTTG

Fln Alignment:

Contig4491___TDTDSVKFSYRMDQKLAKYFLLLREEAEAGRR-GASTEVSDIIADISRLTSDLVEERDIAFAVAAVFDEESGVLSSVEIMLPSRDRAIQKARDSCLTFLAQFINRIGKRALPYASLVKDRCLSIFRREDSGSVQAAALAPLLSIL
A9SH90______________SDAQNVPQEGRMDKQLGSCLASLRDAADSVRSSGGFVDLAPYVVDFSELCKDLYSDEDISYAIAIVFDEDTGIFSILESLLRVRDKSVVRARESCWSFLALFIKKIGPRALHYAALLKEKSLTFFRREDSKSVQAAALTPLIVLL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain