SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4445

Length: 912 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4445

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alcohol dehydrogenase n=1 Tax=Pinus pinaster RepID=F4MKM2_PINPS	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Alcohol dehydrogenase	-	-	4.797e-37	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alcohol dehydrogenase.	EC:1.1.1.1	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010		0.0	%
Sma3	Fatty acid metabolism	00071		0.0	%
Sma3	Glycine, serine and threonine metabolism	00260		0.0	%
Sma3	Tyrosine metabolism	00350		0.0	%
Sma3	Chloroalkane and chloroalkene degradation	00625		0.0	%
Sma3	Naphthalene degradation	00626		0.0	%
Sma3	Retinol metabolism	00830		0.0	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980		0.0	%
Sma3	Drug metabolism - cytochrome P450	00982		0.0	%
Sma3	Metabolic pathways	01100		0.0	%
Sma3	Biosynthesis of secondary metabolites	01110		0.0	%
Sma3	S-(hydroxymethyl)glutathione dehydrogenase.	EC:1.1.1.284	-	3.203e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Methane metabolism	00680		3.203e-11	%

Source	Gene names
Sma3	ADH; ADH1; ADH2; ADH3; ADH6; Adh; Adh-2; Adh1; Adh2; Adh2d; Adh3; AdhC1; AdhC2; AdhC3; AdhC4; AdhC5; AdhC6; AdhC7; At1g77120; F22K20.19; GSNOR1; GSVIVT00014300001; GSVIVT00014303001; GSVIVT00034830001; GSVIVT00034832001; GSVIVT00034833001; GSVIVT000348340

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	alcohol dehydrogenase (NAD) activity	GO:0004022	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G77120.1	ADH1, ADH, ATADH, ATADH1 alcohol dehydrogenase 1 chr1:28975509-28977216 FORWARD LENGTH=379	71%
RefSeq	Arabidopsis thaliana	NP_177837.1	alcohol dehydrogenase class-P [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002309900.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWR7

Fln msg: Distance to subject end: 156 aas, your sequence is shorter than subject: 292 - 464

Fln protein: MASSVAGEVMRGKVLSTRDHLGKSIIQGKHQSLLQAKLPHSKSIWGCRPYKESTKLYCRRSCRMQSAETQKKPIEDTIDPSSKLLSSTAGQVITCKAAVAWGPGQPMKIEKVQVAPPQAMEVRIKVHYTALCRTDFVFWEAKGQTPLFPRIFGHEAAGVVESVGEGVTELKPGDKVLPVFTGECKECRHCKSEDSNMCDLLRVNSGRGVMNHFLGTSTFSEYTVVHVGCVAKINPEAPLDKVCILSCGVATGMGATLNVGKPKKGSTVAIFGLGSVGLAAAEGARIAGASRI

Protein Length: 293

Fln nts: ATGGGGAGTGTGGGAGACCGATACTTGAAGGAAA_-_ATGGCGAGCTCTGTTGCAGGGGAAGTTATGAGAGGCAAAGTGTTGAGCACAAGAGACCATTTGGGGAAATCGATCATTCAAGGAAAACACCAATCTCTACTGCAGGCTAAGCTCCCACATTCAAAGAGCATTTGGGGATGTCGACCCTACAAGGAAAGCACCAAGCTCTACTGCAGGCGAAGTTGTCGCATGCAAAGTGCTGAGACGCAGAAGAAACCAATTGAGGATACGATCGATCCTTCAAGTAAATTGCTAAGCTCTACTGCAGGCCAAGTTATCACGTGCAAAGCTGCTGTTGCTTGGGGACCGGGGCAGCCTATGAAGATTGAAAAAGTGCAAGTGGCACCTCCACAGGCAATGGAAGTCAGGATTAAAGTGCATTATACTGCCTTGTGTCGTACAGACTTTGTTTTTTGGGAAGCAAAGGGTCAAACTCCTCTCTTCCCCCGCATCTTTGGACATGAAGCAGCCGGAGTTGTTGAGAGTGTTGGAGAAGGGGTAACTGAACTCAAGCCGGGTGACAAGGTGCTCCCTGTATTTACCGGAGAATGTAAAGAATGCAGGCACTGCAAGTCAGAAGATAGCAACATGTGTGATCTTCTAAGAGTTAACAGTGGGAGAGGGGTTATGAACCACTTCCTTGGTACATCGACTTTCAGCGAGTACACTGTTGTGCATGTCGGATGTGTTGCCAAAATCAATCCCGAGGCTCCTCTTGACAAAGTTTGTATTCTAAGCTGTGGTGTTGCAACAGGGATGGGTGCTACTTTGAATGTAGGAAAACCCAAGAAAGGTTCGACAGTAGCAATATTTGGCCTTGGGAGTGTTGGGCTTGCTGCTGCTGAAGGGGCAAGAATTGCAGGAGCTTCTCGAATAAT

Fln Alignment:

Contig4445___MASSVAGEVMRGKVLSTRDHLGKSIIQGKHQSLLQAKLPHSKSIWGCRPYKESTKLYCRRSCRMQSAETQKKPIEDTIDPSSKLLSSTAGQVITCKAAVAWGPGQPMKIEKVQVAPPQAMEVRIKVHYTALCRTDFVFWEAKGQTPLFPRIFXXXXXXXXXXXXXXXXXLKPGDKVLPVFTGECKECRHCKSEDSNMCDLLRVNSGRGVM---------------NHFLGTSTFSEYTVVHVGCVAKINPEAPLDKVCILSCGVATGMGATLNVGKPKKGSTVAIFGLGSV
A9NWR7______________MISTTAGEVISYKVFGTRDHLGRSTVQGNSQALLQAKFSHSKAIWGDRPYKENAKLYCRRSCRMQSAQTHKKPFEDQIDPSSKMASSTAGQVITCKAAVAWGPGQPLKIEKVEVAPPQAMEVRIKVHYTALCRTDLVFWEAEGQTPLFPRIFGHEAAGIVESVGEGVTDLKVGDSVLPVFTGECKECRHCKSEESNMCDLLRINTERGVMISDGKSRFSIDGKPVYHFLGTSTFSEYTVVHVGCVAKINPEAPLNKVCILSCGVSTGMGATLNVGKPKKGSTVAIFGLGSV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
316	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain