SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3855

Length: 987 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3855

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thiamine transporter 2 n=7 Tax=Simiiformes RepID=S19A3_HUMAN	-	-	1.0e-12	22%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	32%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: D8RNC5

Fln msg: Distance to subject end: 175 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 240 - 448

Fln protein: MEVPIPLLASLVAYSFFSQFLPIEPYLVPYFISNKHFTNYEVSVEIFPLSVYGTLMFTMLTAPACTILSYRTVIILGTFVTFLAYIMAWFGKSLIEMQIMQVTYGLGMASRVVFSSYIFLLAPEHDYQMLTSITTALSLFSFLLASELSQLLATWRVCYAIYFLCTVASLGICCIVTFSLPKDPPSTRFLKPSLATLFGSNEGFCKVLEETWKGRSIKFFSLWWAVSYAGFSMVQNYGTN

Protein Length: 241

Fln nts: CTAATAACACAAAGCTCCGACCTTCCTTGGCAGCCATGGGACACTTGATTTTTAAGTTTGCCGGAATTTAGGGGCTTTCGGAGGAAGCAATAATTCAATTGTGAAAGAAATAGGTTAGAAGACGGAGATTTTTAAACTAAAACGATTCCGGCAGGTTCTTTAATTATTAATGAATGACGAATCAAGCAAGACAGCCCATAAAATATAAAAATTCAGAATTCGCTAAAAGATTCGTTAGGTTCGTTCGTTGAAGGAACCGGGAAGA_-_ATGGAGGTACCAATACCCCTGTTAGCATCTCTGGTTGCGTATTCATTCTTCTCTCAATTTCTGCCCATCGAGCCTTACCTGGTCCCTTATTTCATCTCCAACAAACACTTCACCAACTACGAGGTGAGCGTAGAAATATTCCCACTTAGTGTGTATGGCACTCTTATGTTCACTATGCTTACAGCACCTGCATGTACTATCTTATCATATCGAACGGTAATAATACTTGGTACATTTGTAACATTTCTAGCGTACATAATGGCTTGGTTTGGGAAGTCACTTATTGAGATGCAAATAATGCAGGTGACTTATGGATTGGGGATGGCATCAAGGGTTGTATTCTCCTCATACATATTTCTTCTTGCACCGGAACATGATTATCAAATGCTGACAAGTATCACGACAGCATTGTCACTTTTCTCTTTTCTGCTAGCTTCTGAGTTGAGCCAATTGTTAGCTACCTGGAGGGTGTGTTATGCGATATATTTTCTTTGTACTGTGGCTTCATTAGGTATTTGCTGCATTGTTACATTTTCCTTGCCGAAAGATCCTCCAAGTACGCGTTTCTTGAAGCCTTCACTAGCTACTTTATTTGGTTCCAATGAGGGATTTTGTAAGGTCTTAGAAGAAACATGGAAGGGGAGGAGCATAAAGTTTTTTTCCCTTTGGTGGGCTGTTTCATATGCAGGCTTTTCAATGGTGCAAAACTATGGCACAAACCT

Fln Alignment:

Contig3855___VPIPLLASLV-AYSFFSQFLPIEPYLVPYFISNKHFTNYEVSVEIFPLSVYGTLMFTMLTAPACTILSYRTVIILGTFVTFLAYIMAWFGKSLIEMQIMQVTYGLGMASRVVFSSYIFLLAPEHDYQMXXXXXXXXXXXXXXXXXXXXXXXXXWRVCYAIYFLCTVASLGICCIVTFSLPKDPPST----------RFLKPSLATLFG--SNEGFCKVLEETWKGRSIKFFSLWWAVSYAGFSMVQNYGTN
D8RNC5______________LPIALAVLLPSAYRFAQRFAPVIPYEVRYMIHNKGITNQEISTRILPVGVYSRSLFIFLAAPACSLFSYHGTLMLASLAVFVEYSLLLWGDSILWLQLMQLFRSMAAGIEVVFPAYLFLLVPENKFQIMTSSTEAASSIAHFGASELGQALIHEGISIDVLLYISMSMVALSVLICLVLPRDPQSSQCSDCPAAPRKSKRPPILELLSICRLKGLATVVRETWENPFVQLLSIWWAFDVAGYAMASTYMLN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
413		16		83	0.994512
828	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain