SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3550

Length: 2665 nt

UniGene Fasta

>sp_v3.0_unigene3550
AGCCCAGCCGCTCACATTCGATATTGTCTATCACCATTCATATTAAAGAAGCAACTCCAGAGGGTGAAGAACTTATTAAATGTGGGAAACTTAATCTTGTAGATCTGGCTGGTTCTGAAAACATTTCACGTTCGGGTGCTCGAGAGGGCAGAGCAAGGGAGGCAGGAGAAATTAATAAGAGCCTGCTTACTCTTGGACGGGTGATCACTGCCCTGGTAGAGCATTTGGGACACGTGCCTTACAGAGACAGCAAGCTGACAAGATTGTTGCGAGATTCTTTGGGTGGAAAAACGAAGACTTGCATTATTGCCACAGTGTCACCCTCTGTCCATTGCCTTGAAGAAACTCTTAGTACCCTGGATTATGCTCATCGTGCTAAAAATATCAAGAACAAACCAGAGGTCAATCAGAAAATGATGAAGTCTGCCCTTATAAAGGACCTATATGCTGAGATTAGCAGACGGAAACAAGAGGTCTATGCTGCACGAGAGAAGAATGGCATATATCTTCCACGTGAACGTTTCCTCCTGGATGAAGCTGAAAAAAAGGCTATGACAGAGAAGATAGAACAGTTGGAGGTAGAAATTGATGCCAAGAACAAGGGAATAGAGGAGTTGCAAGGACTCTACAATTATCAGCAACTTCTGAGTGCAGAATTTAGCAATAAGCTTGAGATGACCCAGAAAAAACTTGAGGATACTGAGTATGCCTTAGATGATCTCGAAGAGAAATACAGTCAGCTGAGCTGTACACTTAAGGAAAAAGAATTCATCATCTCCAACATGTTACAGTCAGAAAAAGCACTGGTTGAGCAGGCATGTGGTCTTCGGTCAGAACTAGAGAACACAACACAAGATGTATCAGGGCTCTTTTCTAAAATTGAGCGTAAGGATAAGATAGAAACTGGAAATAAAGAACTAGTCCAGACATTTCGAATACAGTTAACTCAGCAGCTTGAAGTGTTGCATAAGACTGTTGAAGGTTCTGTGAGCCAACAACAACGGCAGCTACAAACTATGGAAGATCAAATGCAATCCTTTGTCTCCACAAAAACTGAGGCTACAGAAGATCTCAGAAATAGGGTTGAGAATTTGAAGACAATCTATGGCTCTGGAGTCAGGGGCTTACATGATCTAGCCAATGCACTCGATGAAAATTCTGTGTCTACTCTTGGCAGGCTCAACTCAACAATATCCATGCACGCTTCTACTCTTGAGAATCTGGTGGGAAAAACTGTTCTAGATGCAGAGGCATTGCTGAGTGAACTTCATAGTGCTCTGTCCAAGCAAGAGGCCACAATGGCTTTATATGCCCAACAACAGCGGGAGGCAATTCAAAGAACTATAGAGTCCACGAGGGTAATTTCAAAGGTGAACACAGATTTCTTTGCAACACTTGAAAGCCATGCATCTAAGCTTAGTCAGTTTGTGGAAGAAATGCAAATAGTTCACGACAAGAAGTTGGAGGATCTTGAAAGAAAATTTGAGGAATGTGCTGCAAATGAGGAGAAGAAACTCTTGGAGAATTTTGCTAAAATGCTAGCTGCTTCGACAGCTCGAAAATCAGAATTGGTACAGTCTGCAGTGCAAAATCTGCGTGAAAATGCTGTCAATAAAACACATGAGTTGCAACATGGGATGTTGAGTATGCGGCATGATGCATCTGATATTCAAAACCGGTGGAAGTTATACATGAAGCAAGCTGAAAATTTCTATGTGGAGGATACAACATCATTGGCAACAGGGCACAGTTGTATGGAAGAAATTCTTCAGGAATGTATGATGAAAGCGACTGCTGCTGGAGTACAGTGGAGAGGTACACAAGATTCACTACAGAAACTTGAGAGGAGCAATGTTGAAGCTGTTGGTTCTATCATCAAGAGTGGCACTGAGGCAAATCAGCTTCTTCTGGCTAGCTTTACGCAGGCTGCAGCTTCCACCAATGAAGCTGTTAAGACTGGAAATGACAGCTTGTTGTCATCCATTGACAGTTCACTGAAACTCGATCACGATGTGTGCATAAATATACACTCCATAATAACCCCTTGCACCAATGAATTTATAGAGCTACAAAGGAGTCACTATGGCAAGGTGGTAGAGACAACCAACCAAGCAGAAAAATATCTACAAGAGGAATACATGGAAGATGTGCCTTCTTGTACAACACCAAGGAGAAGGCCTATCAGTCTACCAACCATGGCTTCTATAGAGCAGTTACGAACTCCTCCCTTCGATGAATTATTGCAAATATTTCAGGATATCAAATTAGAAAATCGATCAAAACAAGGAAATGGAGAGATAAAGCATCTCATAGTGTCTGAAATTTCATCCATGAGAGACTCCAGAATACCTCTTATAGCCAAAAATTAATTGCATATTCTTTTAGTAGTAATACTACAATTTATTTGATAGAGTTATTCAAAAGTAGCATTGGGTTGGGTCGGGATTGTTTGGCTCTGTAAATTATGTACAGCATACACAGGCACAGGAAACAGAGACGTGTAGCATCAAACAATTATGAATTGGGTCCTTCAGGTCTTTGCCTGTTTTATTCGTTAGTCCTCCTCTTACAGATAGGAAGGAGCAAACATTTGGTTCCCCATTCAAAGTCATCAAAGGTGTAAGCATGTCCATGACTGGACTGTATTACAATGCAAGTCAGTCGT

Ace file of the UniGene sp_v3.0_unigene3550

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] ref\|NP_001190017.1\| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] emb\|CAB82809.1\| kinesin-related protein-like [Arabidopsis t	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Sma3	Kinesin, motor region	-	-	1.874e-11	-

Source	Gene names
Sma3	At2g28620; At3g45850; CHLREDRAFT_114085; CHLREDRAFT_13743; CHLREDRAFT_137882; F16L2_60; GSVIVT00021588001; GSVIVT00023124001; GSVIVT00024429001; KIN4; MICPUCDRAFT_15619; MICPUCDRAFT_20636; MICPUCDRAFT_21418; MICPUCDRAFT_4389; MICPUCDRAFT_45791; MICPUN_630

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	FERM domain	IPR000299	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	MyTH4 domain	IPR000857	-	-
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-
Sma3	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	-
Sma3	FERM central domain	IPR019748	-	-
Sma3	Band 4.1 domain	IPR019749	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G45850.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr3:16855814-16860950 REVERSE LENGTH=1058	59%
RefSeq	Arabidopsis thaliana	NP_001190017.1	P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002299897.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9P3

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 652 - 353

Fln protein: MMKSALIKDLYAEISRRKQEVYAAREKNGIYLPRERFLLDEAEKKAMTEKIEQLEVEIDAKNKGIEELQGLYNYQQLLSAEFSNKLEMTQKKLEDTEYALDDLEEKYSQLSCTLKEKEFIISNMLQSEKALVEQACGLRSELENTTQDVSGLFSKIERKDKIETGNKELVQTFRIQLTQQLEVLHKTVEGSVSQQQRQLQTMEDQMQSFVSTKTEATEDLRNRVENLKTIYGSGVRGLHDLANALDENSVSTLGRLNSTISMHASTLENLVGKTVLDAEALLSELHSALSKQEATMALYAQQQREAIQRTIESTRVISKVNTDFFATLESHASKLSQFVEEMQIVHDKKLEDLERKFEECAANEEKKLLENFAKMLAASTARKSELVQSAVQNLRENAVNKTHELQHGMLSMRHDASDIQNRWKLYMKQAENFYVEDTTSLATGHSCMEEILQECMMKATAAGVQWRGTQDSLQKLERSNVEAVGSIIKSGTEANQLLLASFTQAAASTNEAVKTGNDSLLSSIDSSLKLDHDVCINIHSIITPCTNEFIELQRSHYGKVVETTNQAEKYLQEEYMEDVPSCTTPRRRPISLPTMASIEQLRTPPFDELLQIFQDIKLENRSKQGNGEIKHLIVSEISSMRDSRIPLIAKN*

Protein Length: 653

Fln nts: AGCCCAGCCGCTCACATTCGATATTGTCTATCACCATTCATATTAAAGAAGCAACTCCAGAGGGTGAAGAACTTATTAAATGTGGGAAACTTAATCTTGTAGATCTGGCTGGTTCTGAAAACATTTCACGTTCGGGTGCTCGAGAGGGCAGAGCAAGGGAGGCAGGAGAAATTAATAAGAGCCTGCTTACTCTTGGACGGGTGATCACTGCCCTGGTAGAGCATTTGGGACACGTGCCTTACAGAGACAGCAAGCTGACAAGATTGTTGCGAGATTCTTTGGGTGGAAAAACGAAGACTTGCATTATTGCCACAGTGTCACCCTCTGTCCATTGCCTTGAAGAAACTCTTAGTACCCTGGATTATGCTCATCGTGCTAAAAATATCAAGAACAAACCAGAGGTCAATCAGAAA_-_ATGATGAAGTCTGCCCTTATAAAGGACCTATATGCTGAGATTAGCAGACGGAAACAAGAGGTCTATGCTGCACGAGAGAAGAATGGCATATATCTTCCACGTGAACGTTTCCTCCTGGATGAAGCTGAAAAAAAGGCTATGACAGAGAAGATAGAACAGTTGGAGGTAGAAATTGATGCCAAGAACAAGGGAATAGAGGAGTTGCAAGGACTCTACAATTATCAGCAACTTCTGAGTGCAGAATTTAGCAATAAGCTTGAGATGACCCAGAAAAAACTTGAGGATACTGAGTATGCCTTAGATGATCTCGAAGAGAAATACAGTCAGCTGAGCTGTACACTTAAGGAAAAAGAATTCATCATCTCCAACATGTTACAGTCAGAAAAAGCACTGGTTGAGCAGGCATGTGGTCTTCGGTCAGAACTAGAGAACACAACACAAGATGTATCAGGGCTCTTTTCTAAAATTGAGCGTAAGGATAAGATAGAAACTGGAAATAAAGAACTAGTCCAGACATTTCGAATACAGTTAACTCAGCAGCTTGAAGTGTTGCATAAGACTGTTGAAGGTTCTGTGAGCCAACAACAACGGCAGCTACAAACTATGGAAGATCAAATGCAATCCTTTGTCTCCACAAAAACTGAGGCTACAGAAGATCTCAGAAATAGGGTTGAGAATTTGAAGACAATCTATGGCTCTGGAGTCAGGGGCTTACATGATCTAGCCAATGCACTCGATGAAAATTCTGTGTCTACTCTTGGCAGGCTCAACTCAACAATATCCATGCACGCTTCTACTCTTGAGAATCTGGTGGGAAAAACTGTTCTAGATGCAGAGGCATTGCTGAGTGAACTTCATAGTGCTCTGTCCAAGCAAGAGGCCACAATGGCTTTATATGCCCAACAACAGCGGGAGGCAATTCAAAGAACTATAGAGTCCACGAGGGTAATTTCAAAGGTGAACACAGATTTCTTTGCAACACTTGAAAGCCATGCATCTAAGCTTAGTCAGTTTGTGGAAGAAATGCAAATAGTTCACGACAAGAAGTTGGAGGATCTTGAAAGAAAATTTGAGGAATGTGCTGCAAATGAGGAGAAGAAACTCTTGGAGAATTTTGCTAAAATGCTAGCTGCTTCGACAGCTCGAAAATCAGAATTGGTACAGTCTGCAGTGCAAAATCTGCGTGAAAATGCTGTCAATAAAACACATGAGTTGCAACATGGGATGTTGAGTATGCGGCATGATGCATCTGATATTCAAAACCGGTGGAAGTTATACATGAAGCAAGCTGAAAATTTCTATGTGGAGGATACAACATCATTGGCAACAGGGCACAGTTGTATGGAAGAAATTCTTCAGGAATGTATGATGAAAGCGACTGCTGCTGGAGTACAGTGGAGAGGTACACAAGATTCACTACAGAAACTTGAGAGGAGCAATGTTGAAGCTGTTGGTTCTATCATCAAGAGTGGCACTGAGGCAAATCAGCTTCTTCTGGCTAGCTTTACGCAGGCTGCAGCTTCCACCAATGAAGCTGTTAAGACTGGAAATGACAGCTTGTTGTCATCCATTGACAGTTCACTGAAACTCGATCACGATGTGTGCATAAATATACACTCCATAATAACCCCTTGCACCAATGAATTTATAGAGCTACAAAGGAGTCACTATGGCAAGGTGGTAGAGACAACCAACCAAGCAGAAAAATATCTACAAGAGGAATACATGGAAGATGTGCCTTCTTGTACAACACCAAGGAGAAGGCCTATCAGTCTACCAACCATGGCTTCTATAGAGCAGTTACGAACTCCTCCCTTCGATGAATTATTGCAAATATTTCAGGATATCAAATTAGAAAATCGATCAAAACAAGGAAATGGAGAGATAAAGCATCTCATAGTGTCTGAAATTTCATCCATGAGAGACTCCAGAATACCTCTTATAGCCAAAAATTAATTGCATATTCTTTTAGTAGTAATACTACAATTTATTTGATAGAGTTATTCAAAAGTAGCATTGGGTTGGGTCGGGATTGTTTGGCTCTGTAAATTATGTACAGCATACACAGGCACAGGAAACAGAGACGTGTAGCATCAAACAATTATGAATTGGGTCCTTCAGGTCTTTGCCTGTTTTATTCGTTAGTCCTCCTCTTACAGATAGGAAGGAGCAAACATTTGGTTCCCCATTCAAAGTCATCAAAGGTGTAAGCATGTCCATGACTGGACTGTATTACAATGCAAGTCAGTCGT

Fln Alignment:

Contig3550___REAIQRTIESTRVISKVNTDFFATLESHASKLSQFVEEMQIVHDKKLEDLERKFEECAANEEKKLLENFAKMLAASTARKSELVQSAVQNLRENAVNKTHELQHGMLSMRHDASDIQNRWKLYMKQAENFYVEDTTSLATGHSCMEEILQECMMKATAAGVQWRGTQDSLQKLERSNVEAVGSIIKSGTEANQLLLASFTQAAASTNEAVKTGNXXXXXXXXXXXXXXXXVCINIHSIITPCTNEFIELQRSHYGKVVETTNQAEKYLQEEYMEDVPSCTTPRRRPISLPTMASIEQLRTPPFDELLQIFQDIKLENRSKQGNGEIKHL--IVSEISSMRDSRIP
D5A9P3______________RERARTSIELMTSISGATMGFFENLADQASKFQQHIEHSHEVREQSIIDFQKAYEAQSRQEEQQLINDISNLVANAMVRKADMVNTRLSSLREKVIEDRESMQQGILSIDAATSDAKRKWETFAKQADNDANESAALSAAKHCRMELLLQQCVNITSNASQHWKTTKKTGEDHSRKYVTVMESLVRDGVEANDKHDAEIDDSRVSAEVDIEKNNESILLHVDSSVEHEHKVASEILSTIEAHSHTLEKLQNDHLKRVTHIEEQAEHCFCNEYMEDQPTSTTPSRQSIEIPSRDLIENMRAPPFEALVEEFR----ENNPHDVDLKIYHENGISKESKPRQDSLIP

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1677		80		20	0.995493
1902	40		60		1.0
1941		60		40	1.0
1944		20		80	0.995493
2011	50		50		1.0
2098	14		85		0.993533
2099	85			14	0.993533
2101	85			14	0.993533
2342	25	75			0.996473
2345			75	25	0.996473
2346	75			25	0.996473
2454	10		90		0.90298
2455	10	90			0.90298
2457		90		10	0.90298
2528	12			87	0.992554
2530	12	87			0.992554
2543		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain