SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3547

Length: 2829 nt

UniGene Fasta

>sp_v3.0_unigene3547
CACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAGGCAGAGTTCGGACCAAACAATTTGAGAACTGGGAGGGACCCTCGTTCAGAATTCTGAGCTCCAGATACAGTCGGCCATGGCGGCCATAGAAGCTTCGTGCAACTGACGTAAAATCCCTCTTTCCGCTGAATCTCCTGACGTTATTTTTTGGTCAAAATTTGGGCCTTTTATCATAGCGGCTCTACTTCCAGGTCCCATTTTCTCAGCTGCGGTATCACAGGCTGCCCGGTTCGCTGAACGCCTGTAATAAGGGCCGCGGGCCTCTCACAGTAAAGCTTTCTAGCTCTCTTTGGTCCTGGCGACCGGCCTTCGCGATCAGAGGGTTTGTGATTTATAGATCTGGGGGTTCGAAGAGCCGGGGTTTAAATTTTCGGTAAATGCAACAGCCAGCGGTGATGACAAGAGAGAAGCGGCCGCTGGAGAGGGAAGACCCGCCGGAGGAAAAACGCCAGAAGGTTCCTCAGCTTGCAAGTGTGATAGTGGAAGCTCTAAAGGTGGACAGTTTGCAGAGGCTTTGCTCATCTTTGGAACCAATTCTTCGGAGGGTGGTTAGTGAAGAGGTTGAACGTGCTTTAGCCAAGTTGGGGCCTTCTAAATTTGGTGCAAGGTCGTCTCCAAAACGTATAGAAGGACGAGATGGGAGAAACTTGCGACTACATTTCAGAACAAGATTATCACTTCCACTCTTCACAGGTGGGAAGGTTGAAGGAGAACAGGGTGCTGCTATTGTTGTTGTGCTCCTGGATGCAGACACAGGGGTGGTTGTTACGTCAGGACCTGAGGCATCTGCAAAATTAGATATTACGGTATTGGAAGGAGACTTCAACAATGAAGATGACGAGGATTGGACACAGGAAGACTTTGAAAGTCACGAAGTGCGTGAACGTGAGGGGAAGAGGCCTCTATTGACAGGAGAATTGCAAGTTACATTGAAGGAAGGTGTTGGTACAGTTGGGGAGTTAATGTTTACAGACAATTCAAGCTGGATAAGGAGCAGGAAGTTTAGGCTTGGAGTAAAGGTTACATCAGGTTACTGTGAAGGCATGCGTATTCGTGAGGCTAAGACAGAAGCCTTCACCGTGAAAGATCATAGAGGGGAACTGTACAAGAAACATTATCCACCAGCATTACAGGATGATGTTTGGAGATTAGATAAAATTGGCAAAGATGGAGCGTTTCACAAGAAACTTAATAAAGCTGGGGTTTATACGGTTGAGGAATTTCTGAGGCTTGTGGTTCGAGACCCTCAAAAATTACGAAATATCCTTGGAAGTGGTATGTCGAACAAGATGTGGGAGAGTACAGTAGAGCACGCGAAAACTTGTGTCCTCAGTGGGAAGCACTATGTTTACTACCCTGACGAGACACGGAATGTTGGTGTTATCTTCAATAATGTTTATGAACTTGCGGGCCTTATTGCGGAAGGGCAATATTTGCCCGCTGAATCGCTTTCTGACAATGAGAAGGTGTTCGTTGATTCACTGGTAAAGAAGGCATATGATAATTGGATGTCTGTTATTGAATATGATGGTAAGGCATTAGTTGGTGCAAGGTCAAATAAGAAGGGAAATAGTTCTCGTCCAGAAGCTTCAATGTCGACCATGCCATATTCTACTGCTTATAGCCAGCAAGCTCCCTTAACTTCTGAACCAGTTGCCATGCATCCTGAACAAGCACCAGGAAATTCTGGTTTAGCTGTAGGTGGTAGTTCTTCAAGTTCAGTTTACGGTGAGAGATCAGTCAACAGATTTGCAGGACAACCTCAGCAATTGACGTCTAACAATCAATTATCTTATAGCAATCTGCCTTACAATAATGCATCAAACCAGGTATTAGTGGGATCATCACACCAGAGTGCAGTTCCTGGAACAGATTCCATTGTTGGTCTTGCGCTGGGGCCTCCGCAGTCAACGGTAACAACACTTATTCCTTATCAGGCTCCGGGGACGGCAATGCAATCGGGAACTACCAATGGAGTGGAAGATTGGTCACGTCTCAGAGATACCAGGGTTCAGGTGGATGACTTCTTCTCTGTGGAAGATATACGTTCAAGGAGTATGGAAATGCTTGAAAATGAAGACATGCAACATTTACTACGCATGTTCAGCATGAATGGAGGAGGTGTCGGTATTGCAGAGGATGGTTTTTCCTATCCTCCTCCTTTTACTCCTGCTCAAACTTATCCTAGTTATAGCGAAGAAAAAACTCGTAGCTCTGGAAAAGCTATCGTTGGATGGCTGAAGCTCAAAGCAGCTTTACGCTGGGGTATTTTTATCAGGAAGATTGCAGCAGAGAAAAAAAGGGCACGAATTGAGGAATTGGACTAGCAATTTATATATTAGAAATCTATCTCTGGGGTAAGAACATAATTGAAGTGTTTGACCAATGTTAGTGATAGATTTAGCCAGATCTACTGACGGTGTATAGGTGTATCCTAAACCTCAGCACAACCATCGTTTTGATGAATGACAGTTGTACAAAATCGTTGTTTTTTCATGGAGTGTGCGAGTTCCATTTAGCCGCACAGCCCACCCACGACTGACGGCAAAAGAATAGGTTCAGTAAAAAAATTGCCTTTGATTTTTTCTGGTGTATACTTTTATCAGGGCAAACCACATTTTCTTAAAATTTTAATCCTCAGCATGATGCAGAGATTCAGATGTGCAGTATAATTGACAGCATATGATGTCATGTAAAATAAATTCAATCTATCTGACACGTTTGCTTCTAGCAGAAGCTTAATTTTTCTGTTCCAAGACTCGTGTTTAATCTCAAAATTCATTTCAA

Ace file of the UniGene sp_v3.0_unigene3547

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin-binding protein [Arabidopsis thaliana] dbj\|BAB08793.1\| calmodulin-binding protein [Arabidopsis thaliana] gb\|AAL07138.1\| putative calmodulin-binding protein [Arabidopsis thaliana] gb\|AAM14373.1\| putative calmodulin-binding protein [Arabidopsis t	-	-	0.0	58%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	61%
Sma3	Putative calmodulin-binding protein	-	-	1.281e-19	-

Source	Gene names
Sma3	AT4g25800; AT4g31000; At2g18750; At2g24300; At4g25800; At4g31000; At4g31000/F6I18.90; At5g57580; At5g62570; CBP60-A; CBP60-B; CBP60-C; F25P22.22; F6I18.90; GSVIVT00009734001; GSVIVT00011294001; GSVIVT00011295001; GSVIVT00011537001; GSVIVT00016154001; GSVI

Source	GOs	Term	Type	e value	Identity
Sma3	calmodulin binding	GO:0005516	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	0.0	-
Sma3	Calmodulin binding protein-like	IPR012416	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G57580.1	Calmodulin-binding protein chr5:23314994-23317683 REVERSE LENGTH=647	58%
RefSeq	Arabidopsis thaliana	NP_200566.1	Calmodulin-binding protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002325070.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: F6H7U0

Fln msg: W1: There is no M at the beginning,

Fln protein: RLYFQVPFSQLRYHRLPGSLNACNKGRGPLTVKLSSSLWSWRPAFAIRGFVIYRSGGSKSRGLNFR*MQQPAVMTREKRPLEREDPPEEKRQKVPQLASVIVEALKVDSLQRLCSSLEPILRRVVSEEVERALAKLGPSKFGARSSPKRIEGRDGRNLRLHFRTRLSLPLFTGGKVEGEQGAAIVVVLLDADTGVVVTSGPEASAKLDITVLEGDFNNEDDEDWTQEDFESHEVREREGKRPLLTGELQVTLKEGVGTVGELMFTDNSSWIRSRKFRLGVKVTSGYCEGMRIREAKTEAFTVKDHRGELYKKHYPPALQDDVWRLDKIGKDGAFHKKLNKAGVYTVEEFLRLVVRDPQKLRNILGSGMSNKMWESTVEHAKTCVLSGKHYVYYPDETRNVGVIFNNVYELAGLIAEGQYLPAESLSDNEKVFVDSLVKKAYDNWMSVIEYDGKALVGARSNKKGNSSRPEASMSTMPYSTAYSQQAPLTSEPVAMHPEQAPGNSGLAVGGSSSSSVYGERSVNRFAGQPQQLTSNNQLSYSNLPYNNASNQVLVGSSHQSAVPGTDSIVGLALGPPQSTVTTLIPYQAPGTAMQSGTTNGVEDWSRLRDTRVQVDDFFSVEDIRSRSMEMLENEDMQHLLRMFSMNGGGVGIAEDGFSYPPPFTPAQTYPSYSEEKTRSSGKAIVGWLKLKAALRWGIFIRKIAAEKKRARIEELD*

Protein Length: 718

Fln nts: CACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAGGCAGAGTTCGGACCAAACAATTTGAGAACTGGGAGGGACCCTCGTTCAGAATTCTGAGCTCCAGATACAGTCGGCCATGGCGGCCATAGAAGCTTCGTGCAACTGACGTAAAATCCCTCTTTCCGCTGAATCTCCTGACGTTATTTTTTGGTCAAAATTTGGGCCTTTTATCATAGCGGCTCTACTTCCAGGTCCCATTTTCTCAGCTGCGGTATCACAGGCTGCCCGGTTCGCTGAACGCCTGTAATAAGGGCCGCGGGCCTCTCACAGTAAAGCTTTCTAGCTCTCTTTGGTCCTGGCGACCGGCCTTCGCGATCAGAGGGTTTGTGATTTATAGATCTGGGGGTTCGAAGAGCCGGGGTTTAAATTTTCGGTAAATGCAACAGCCAGCGGTGATGACAAGAGAGAAGCGGCCGCTGGAGAGGGAAGACCCGCCGGAGGAAAAACGCCAGAAGGTTCCTCAGCTTGCAAGTGTGATAGTGGAAGCTCTAAAGGTGGACAGTTTGCAGAGGCTTTGCTCATCTTTGGAACCAATTCTTCGGAGGGTGGTTAGTGAAGAGGTTGAACGTGCTTTAGCCAAGTTGGGGCCTTCTAAATTTGGTGCAAGGTCGTCTCCAAAACGTATAGAAGGACGAGATGGGAGAAACTTGCGACTACATTTCAGAACAAGATTATCACTTCCACTCTTCACAGGTGGGAAGGTTGAAGGAGAACAGGGTGCTGCTATTGTTGTTGTGCTCCTGGATGCAGACACAGGGGTGGTTGTTACGTCAGGACCTGAGGCATCTGCAAAATTAGATATTACGGTATTGGAAGGAGACTTCAACAATGAAGATGACGAGGATTGGACACAGGAAGACTTTGAAAGTCACGAAGTGCGTGAACGTGAGGGGAAGAGGCCTCTATTGACAGGAGAATTGCAAGTTACATTGAAGGAAGGTGTTGGTACAGTTGGGGAGTTAATGTTTACAGACAATTCAAGCTGGATAAGGAGCAGGAAGTTTAGGCTTGGAGTAAAGGTTACATCAGGTTACTGTGAAGGCATGCGTATTCGTGAGGCTAAGACAGAAGCCTTCACCGTGAAAGATCATAGAGGGGAACTGTACAAGAAACATTATCCACCAGCATTACAGGATGATGTTTGGAGATTAGATAAAATTGGCAAAGATGGAGCGTTTCACAAGAAACTTAATAAAGCTGGGGTTTATACGGTTGAGGAATTTCTGAGGCTTGTGGTTCGAGACCCTCAAAAATTACGAAATATCCTTGGAAGTGGTATGTCGAACAAGATGTGGGAGAGTACAGTAGAGCACGCGAAAACTTGTGTCCTCAGTGGGAAGCACTATGTTTACTACCCTGACGAGACACGGAATGTTGGTGTTATCTTCAATAATGTTTATGAACTTGCGGGCCTTATTGCGGAAGGGCAATATTTGCCCGCTGAATCGCTTTCTGACAATGAGAAGGTGTTCGTTGATTCACTGGTAAAGAAGGCATATGATAATTGGATGTCTGTTATTGAATATGATGGTAAGGCATTAGTTGGTGCAAGGTCAAATAAGAAGGGAAATAGTTCTCGTCCAGAAGCTTCAATGTCGACCATGCCATATTCTACTGCTTATAGCCAGCAAGCTCCCTTAACTTCTGAACCAGTTGCCATGCATCCTGAACAAGCACCAGGAAATTCTGGTTTAGCTGTAGGTGGTAGTTCTTCAAGTTCAGTTTACGGTGAGAGATCAGTCAACAGATTTGCAGGACAACCTCAGCAATTGACGTCTAACAATCAATTATCTTATAGCAATCTGCCTTACAATAATGCATCAAACCAGGTATTAGTGGGATCATCACACCAGAGTGCAGTTCCTGGAACAGATTCCATTGTTGGTCTTGCGCTGGGGCCTCCGCAGTCAACGGTAACAACACTTATTCCTTATCAGGCTCCGGGGACGGCAATGCAATCGGGAACTACCAATGGAGTGGAAGATTGGTCACGTCTCAGAGATACCAGGGTTCAGGTGGATGACTTCTTCTCTGTGGAAGATATACGTTCAAGGAGTATGGAAATGCTTGAAAATGAAGACATGCAACATTTACTACGCATGTTCAGCATGAATGGAGGAGGTGTCGGTATTGCAGAGGATGGTTTTTCCTATCCTCCTCCTTTTACTCCTGCTCAAACTTATCCTAGTTATAGCGAAGAAAAAACTCGTAGCTCTGGAAAAGCTATCGTTGGATGGCTGAAGCTCAAAGCAGCTTTACGCTGGGGTATTTTTATCAGGAAGATTGCAGCAGAGAAAAAAAGGGCACGAATTGAGGAATTGGACTAG___CAATTTATATATTAGAAATCTATCTCTGGGGTAAGAACATAATTGAAGTGTTTGACCAATGTTAGTGATAGATTTAGCCAGATCTACTGACGGTGTATAGGTGTATCCTAAACCTCAGCACAACCATCGTTTTGATGAATGACAGTTGTACAAAATCGTTGTTTTTTCATGGAGTGTGCGAGTTCCATTTAGCCGCACAGCCCACCCACGACTGACGGCAAAAGAATAGGTTCAGTAAAAAAATTGCCTTTGATTTTTTCTGGTGTATACTTTTATCAGGGCAAACCACATTTTCTTAAAATTTTAATCCTCAGCATGATGCAGAGATTCAGATGTGCAGTATAATTGACAGCATATGATGTCATGTAAAATAAATTCAATCTATCTGACACGTTTGCTTCTAGCAGAAGCTTAATTTTTCTGTTCCAAGACTCGTGTTTAATCTCAAAATTCATTTCAA

Fln Alignment:

Contig3547___RSGGSKSRGLNFR*MQQPAVMTREKRPLEREDPPE-EKRQKVPQLASVIVEALKVDSLQRLCSSLEPILRRVVSEEVERALAKLGPSKFGARSSPKRIEGRDGRNLRLHFRTRLSLPLFTGGKVEGEQGAAIVVVLLDADTGVVVTSGPEASAKLDITVLEGDFNNEDDEDWTQEDFESHEVREREGKRPLLTGELQVTLKEGVGTVGELMFTDNSSWIRSRKFRLGVKVTSGYCEGMRIREAKTEAFTVKDHRGELYKKHYPPALQDDVWRLDKIGKDGAFHKKLNKAGVYTVEEFLRLVVRDPQKLRNILGSGMSNKMWESTVEHAKTCVLSGKHYVYYPDETRNVGVIFNNVYELAGLIAEGQYLPAESLSDNEKVFVDSLVKKAYDNWMSVIEYDGKALVGARSNKKGNSSRPEASMSTMPYSTAYSQQAPLTSEPVAMHPEQAPXXXXXXXXXXXXXXXXXXXXXNRFAGQPQQLTSNNQLSY--SNLPYNNASNQVLVGSSHQSAVPGTDSIVGLALGPPQSTVTTLIPYQAPGTAMQSGTTNGVEDWSRLRDTRVQVDDFFSVEDIRSRSMEMLENEDMQHLLRMFSMNGGG---VGIAEDGFSYPPPFTP-AQTYPSYSEEKTRSSGKAIVGWLKLKAALRWGIFIRKIAAEKKRARIEELD
F6H7U0______________REGCLEAHKMQTRYMERSNSLAREKRALDPSSTEEGQSDRKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPAKLTGRSSPKRIEGPDGRNLQLQFRSRLSLPLFTGGKVEGEQGTTIHIVLLDASTGHVVTSGPESSVKLDVVVLEGDFNNEDDDGWNQEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGELTFTDNSSWIRSRKFRLGLKVASGYCEGMRIREAKTDAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLVEHAKTCVLSGKLYVYYPDDVRSVGVVFNNIYELSGLIAGGQYHSADSLTDNQKVFVDTLVKKAYDNWISVVEYDGKSLLNFNQSKSSGSSQTEVAMGPQDYPNSFDHQLTLPSLPVSVPPQQ------PSVGPSITVGGYNDNMPTRYPIQSQNVNLNAPMQFDGTSFPLQNQ----LIGNPHQVQLPSNESM--LALGPPPATTP---GFQSVGTS----------------NLNYRVDDFFPEDEIRMRSHEMLENDDMQHLLRIFNMGNHGHASANVTDDGYPYSSAYMPTSSTGYGFDEDRSRSSGKAVVGWLKLKAALRWGIFVRKKAAE-RRAQLVELD

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1208	80			20	0.995493
1210	80		20		0.995493
1211			20	80	0.995493
1271	20		80		0.995493
1680		20		80	1.0
1702		11		88	0.923564
1782	12		87		0.992554
2354		10		89	0.999919
2524	87			8	0.999414
2548	15	85			1.0
2549		15	85		1.0
2551			85	15	1.0
2566	88		11		0.999952
2612	40			20	1.0
2614	20			80	0.995493
2628		50		50	1.0
2629		66		33	0.997452
2652	80			20	0.995493
2653	80			20	0.995493
2654	80	20			0.995493
2655		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain