SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3508

Length: 2689 nt

UniGene Fasta

>sp_v3.0_unigene3508
CAATCTTTCTACTTTCTTGAATCTGCTTGATATTTCGGAGTAAAGATGGTGTCGGAGGATGCAGACCTGGCGAATGGTGCAGTAGATAACGAAGGTCCAAGCCTTTTAAAAAAGGGGCGGGTTGATTCCTTCGATGTGGAGTCCAGTAGAGTTTCCAGGATGAATCATGGCGGCAAGGTACTAACGATGGCCGCCACTCTACACTTGGCATATCAGAGTATCGGTGTAGTTTATGGGGATATAGGGACTTCTCCTCTTTATGTATATTCCAGCACATTTTCAGATGGAGGCATCCATCACCCAGATGATATCATTGGCGCTTTCTCACTCATCATATATACGCTCACGCTGCTGCCACTCTGCAAATATGTTCTCACTGTACTTTGGGCCAATGACAATGGAGACGGCGGTACTTTTGCACTGTATTCTGTGATATGCCGCCATGCCAAGGTGAGCCTCATCCCCAACCATCAGGCAGAGGACAGGGAGCTCTCAACATATAAGCTTGCCACACCGAACAGACAATTGAAAAGAGCTTTGAAGATAAAGGAAGCTCTGGAACAAAGTAGTACGGCCAAGATTGTTTTGTTGTTGCTCACGCTTACTGGAACCTCCATGGTTATGGGAGATGCTATCTTGACTCCTTCCATCTCAGTTATATCAGCAGTGCAAGGGATCCAGACTATCAAACCGTCCCTAAGCCAAGAGGTCGTTGTTGGGATATCTGTGGTGATCTTAATTATCCTCTTCTCAGTCCAGAGGTTCGGAACCGATAGAGTTGGCACCGCATTCGCCCCTGCTATTCTGGTTTGGTTTACGTTCATATTGTTGATTGGCATTTACAACCTAGCCAAACATGATACAAGCGTGTTACGAGCTTTCTATCCCAAATATATCATTGACTACTTTAACAGAAATCAGAAACGAGCATGGGTTTCCCTGGGAGGAATCGTTCTTTGTATTACGGGAAATGAAGCTATGTTTGCAGACCTAGGGCACTTTTCTGTTCGCTCCATCCAGATTTCCTTTACGGGACTTATCTATCCGAGTCTCTTATGTGCATATGGAGGGCAAGCTGCATACCTGAGAGACTTCCCAAATGATGTGTCCAAGGCTTTTTACAAATCAATTCCAGGTCCTGTATACTGGCCAATGTTTGTTGTTGCTGTTGTGGCTGCTATTATTGCAAGCCAAGCCATGATCTCTGCCACTTTCTCCATTTTAAAGCAAGCGATGCATCTGGGATGCTTTCCAAATATCAGAATTGTTCACACTTCAACTAAATATGCAGGCCAAGTATACATTCCAGAAATCAACTACATTTTAATGGTGGCATGCGTGCTTGTCACAGTTAGTTTCAAAACCACAACTACGCGGGGTAATGCTTATGGTATAGCGGTGGTTGGTGATATGATCGTAACCTCAACATTGCTAACTCTTATAATGCTTATGGTATGGCAAACACCTATATATTTTGTTGCAATGTATGTGCTTCTGATTGGAACAACAGAGTGGATTTACTACTCAGCAGCTCTTTATAAGTTTCCTAAAGGAGGGTACCTACCGTTAGCTTTTGCAGCAGTTTTGTTATTCACAATGTACGTTTGGCATTACGTGTACGTAAGGAGATATGGTTATGAGATGGAGCACAAGGTGTCCAAAGAACAAATTGACAGCCTATTCTCAAGCTTAAGCGTGGCCAGAGTTCCTGGGATTGGGCTTCTGTTTTCGGAACCGGCACAGGGAATGCCACTCATATTTTCACATTTTATAACCAATCTCCCTGCTGTACATTCTGTTGTTGTATTTGTTTGTGTAAAGTATTTGCCCGTGAACACAGTCCCGGCTGAAGAACGCTTTCGATTCCAACGGGTTGATCCAAAAGAATACAAAATGTATCGATGTGTTGCGATGTACGGTTACACGGATGTGCGTACTGGGAATGTGGAATTCGAAAGCGACTTGCTGAACTCCTTGAAAGAATTTGTACAATCCGAGTATATGTACAGGCTTAATGAAATTGAAATAAGAGAGAGCCAGACATTTGAGTCGACAGCTAAATCAGTTGGGTCTGGAGATGAGGGTGAAGTCGATGCTGTGGTCTCTTCCCAGAGTCGACGATTCGTCGAAGTCGCCGAGTTTGAGTCGCAGCAGGACATTGAATTCTTGCAAGAAGCAAGAAAGGCAGGTGTGGTGTATTTGGTGGGAGATAGCCAGGTGAGTGCCAAGACTGGTTCTCGGTTGCTTAAGAGAATTGTGGTTAACACTGTATATCGATTTATGCGGAGGAATTGCAGACAAGAAAGGACTTCTTTGGATATTCCTCACAAAAGTGTTTTGCGCGTTGGCATGGATTACGAGATTTGATATCAGGGCTTCTTTTCTTATGTGCATTATGGTATAGTGTCTTTGTATGGAGATACAGGTTTATTTTTTATGTGTCCGGCCAAAGCTAAGTGAGTTTTAGGTCTCTGACGATGAGAGCTGTCTCATCAGAGCGAAGTGGTGTCCGATGTGTGGGTTTTTACTAAAGTATTGTATCCTAAATATTTATAAAAAGGTGAAAGGTGTATGGTTTAAAGTATTGTATCCTAAATATTTATAAAAAGGTGAAAGGTGTATGGTTTGAATCCCAATAAAATATACTTTTTAATAGGAAAAAGAATACTCGTGATGGATTATTTTGTTA

Ace file of the UniGene sp_v3.0_unigene3508

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	high-affinity potassium transporter [Phragmites australis]	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Potassium transporter, putative	-	-	1.691e-36	-

Source	Gene names
Sma3	At1g31120; At1g60160; At1g70300; At2g30070; At2g35060; At2g40540; At3g02050; At4g13420; At4g19960; At4g33530; At5g09400; At5g14880; B1026C12.31-1; B1026C12.31-2; F17M5.1; F17O7.17; F18F4.60; F1C9.17; F23F1.18; GSVIVT00000271001; GSVIVT00020772001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	potassium:sodium symporter activity	GO:0009674	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G13420.1	HAK5, ATHAK5 high affinity K+ transporter 5 chr4:7797038-7802174 REVERSE LENGTH=785	51%
RefSeq	Arabidopsis thaliana	NP_567404.1	Potassium transporter 5 [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002320355.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P149

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 774 - 225

Fln protein: MVSEDADLANGAVDNEGPSLLKKGRVDSFDVESSRVSRMNHGGKVLTMAATLHLAYQSIGVVYGDIGTSPLYVYSSTFSDGGIHHPDDIIGAFSLIIYTLTLLPLCKYVLTVLWANDNGDGGTFALYSVICRHAKVSLIPNHQAEDRELSTYKLATPNRQLKRALKIKEALEQSSTAKIVLLLLTLTGTSMVMGDAILTPSISVISAVQGIQTIKPSLSQEVVVGISVVILIILFSVQRFGTDRVGTAFAPAILVWFTFILLIGIYNLAKHDTSVLRAFYPKYIIDYFNRNQKRAWVSLGGIVLCITGNEAMFADLGHFSVRSIQISFTGLIYPSLLCAYGGQAAYLRDFPNDVSKAFYKSIPGPVYWPMFVVAVVAAIIASQAMISATFSILKQAMHLGCFPNIRIVHTSTKYAGQVYIPEINYILMVACVLVTVSFKTTTTRGNAYGIAVVGDMIVTSTLLTLIMLMVWQTPIYFVAMYVLLIGTTEWIYYSAALYKFPKGGYLPLAFAAVLLFTMYVWHYVYVRRYGYEMEHKVSKEQIDSLFSSLSVARVPGIGLLFSEPAQGMPLIFSHFITNLPAVHSVVVFVCVKYLPVNTVPAEERFRFQRVDPKEYKMYRCVAMYGYTDVRTGNVEFESDLLNSLKEFVQSEYMYRLNEIEIRESQTFESTAKSVGSGDEGEVDAVVSSQSRRFVEVAEFESQQDIEFLQEARKAGVVYLVGDSQVSAKTGSRLLKRIVVNTVYRFMRRNCRQERTSLDIPHKSVLRVGMDYEI*

Protein Length: 775

Fln nts: CAATCTTTCTACTTTCTTGAATCTGCTTGATATTTCGGAGTAAAG_-_ATGGTGTCGGAGGATGCAGACCTGGCGAATGGTGCAGTAGATAACGAAGGTCCAAGCCTTTTAAAAAAGGGGCGGGTTGATTCCTTCGATGTGGAGTCCAGTAGAGTTTCCAGGATGAATCATGGCGGCAAGGTACTAACGATGGCCGCCACTCTACACTTGGCATATCAGAGTATCGGTGTAGTTTATGGGGATATAGGGACTTCTCCTCTTTATGTATATTCCAGCACATTTTCAGATGGAGGCATCCATCACCCAGATGATATCATTGGCGCTTTCTCACTCATCATATATACGCTCACGCTGCTGCCACTCTGCAAATATGTTCTCACTGTACTTTGGGCCAATGACAATGGAGACGGCGGTACTTTTGCACTGTATTCTGTGATATGCCGCCATGCCAAGGTGAGCCTCATCCCCAACCATCAGGCAGAGGACAGGGAGCTCTCAACATATAAGCTTGCCACACCGAACAGACAATTGAAAAGAGCTTTGAAGATAAAGGAAGCTCTGGAACAAAGTAGTACGGCCAAGATTGTTTTGTTGTTGCTCACGCTTACTGGAACCTCCATGGTTATGGGAGATGCTATCTTGACTCCTTCCATCTCAGTTATATCAGCAGTGCAAGGGATCCAGACTATCAAACCGTCCCTAAGCCAAGAGGTCGTTGTTGGGATATCTGTGGTGATCTTAATTATCCTCTTCTCAGTCCAGAGGTTCGGAACCGATAGAGTTGGCACCGCATTCGCCCCTGCTATTCTGGTTTGGTTTACGTTCATATTGTTGATTGGCATTTACAACCTAGCCAAACATGATACAAGCGTGTTACGAGCTTTCTATCCCAAATATATCATTGACTACTTTAACAGAAATCAGAAACGAGCATGGGTTTCCCTGGGAGGAATCGTTCTTTGTATTACGGGAAATGAAGCTATGTTTGCAGACCTAGGGCACTTTTCTGTTCGCTCCATCCAGATTTCCTTTACGGGACTTATCTATCCGAGTCTCTTATGTGCATATGGAGGGCAAGCTGCATACCTGAGAGACTTCCCAAATGATGTGTCCAAGGCTTTTTACAAATCAATTCCAGGTCCTGTATACTGGCCAATGTTTGTTGTTGCTGTTGTGGCTGCTATTATTGCAAGCCAAGCCATGATCTCTGCCACTTTCTCCATTTTAAAGCAAGCGATGCATCTGGGATGCTTTCCAAATATCAGAATTGTTCACACTTCAACTAAATATGCAGGCCAAGTATACATTCCAGAAATCAACTACATTTTAATGGTGGCATGCGTGCTTGTCACAGTTAGTTTCAAAACCACAACTACGCGGGGTAATGCTTATGGTATAGCGGTGGTTGGTGATATGATCGTAACCTCAACATTGCTAACTCTTATAATGCTTATGGTATGGCAAACACCTATATATTTTGTTGCAATGTATGTGCTTCTGATTGGAACAACAGAGTGGATTTACTACTCAGCAGCTCTTTATAAGTTTCCTAAAGGAGGGTACCTACCGTTAGCTTTTGCAGCAGTTTTGTTATTCACAATGTACGTTTGGCATTACGTGTACGTAAGGAGATATGGTTATGAGATGGAGCACAAGGTGTCCAAAGAACAAATTGACAGCCTATTCTCAAGCTTAAGCGTGGCCAGAGTTCCTGGGATTGGGCTTCTGTTTTCGGAACCGGCACAGGGAATGCCACTCATATTTTCACATTTTATAACCAATCTCCCTGCTGTACATTCTGTTGTTGTATTTGTTTGTGTAAAGTATTTGCCCGTGAACACAGTCCCGGCTGAAGAACGCTTTCGATTCCAACGGGTTGATCCAAAAGAATACAAAATGTATCGATGTGTTGCGATGTACGGTTACACGGATGTGCGTACTGGGAATGTGGAATTCGAAAGCGACTTGCTGAACTCCTTGAAAGAATTTGTACAATCCGAGTATATGTACAGGCTTAATGAAATTGAAATAAGAGAGAGCCAGACATTTGAGTCGACAGCTAAATCAGTTGGGTCTGGAGATGAGGGTGAAGTCGATGCTGTGGTCTCTTCCCAGAGTCGACGATTCGTCGAAGTCGCCGAGTTTGAGTCGCAGCAGGACATTGAATTCTTGCAAGAAGCAAGAAAGGCAGGTGTGGTGTATTTGGTGGGAGATAGCCAGGTGAGTGCCAAGACTGGTTCTCGGTTGCTTAAGAGAATTGTGGTTAACACTGTATATCGATTTATGCGGAGGAATTGCAGACAAGAAAGGACTTCTTTGGATATTCCTCACAAAAGTGTTTTGCGCGTTGGCATGGATTACGAGATTTGATATCAGGGCTTCTTTTCTTATGTGCATTATGGTATAGTGTCTTTGTATGGAGATACAGGTTTATTTTTTATGTGTCCGGCCAAAGCTAAGTGAGTTTTAGGTCTCTGACGATGAGAGCTGTCTCATCAGAGCGAAGTGGTGTCCGATGTGTGGGTTTTTACTAAAGTATTGTATCCTAAATATTTATAAAAAGGTGAAAGGTGTATGGTTTAAAGTATTGTATCCTAAATATTTATAAAAAGGTGAAAGGTGTATGGTTTGAATCCCAATAAAATATACTTTTTAATAGGAAAAAGAATACTCGTGATGGATTATTTTGTTA

Fln Alignment:

Contig3508___DVESSRVSRMNHGGKVLTMAATLHLAYQSIGVVYGDIGTSPLYVYSSTFSDGGIHHPDDIIGAFSLIIYTLTLLPLCKYVLTVLWANDNGDGGTFALYSVICRHAKVSLIPNHQAEDRELSTYKLATPNRQLKRALKIKEALEQSSTAKIVLLLLTLTGTSMVMGDAILTPSISVISAVQGIQTI
A9P149______________DAEAGHVTAMD-ARKELSALMILRLAFHSFGVVYGDLGTSPLYVFSSTFPDG-IQDSEDVMGALSLIIYTLTLIPLLKYVFVVMRANDNGEGGTFALYSLLCRHAKVNTIPNQDRTDEELTTYSRQT-IKDKSFAARTKKWLEGKVYRKNALLLLVLIGTCMVIGDGIFTPAISGHASLSSILMI

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
276	83			16	0.994512
355		75		25	1.0
360	25	75			1.0
377		90	10		0.90298
389		90		10	0.90298
392	90	10			0.90298
394		10	90		0.90298
667	66		33		0.997452
671		66	33		0.997452
743	66			33	0.997452
1638		33	66		0.997452
2060		66		33	1.0
2224		90	10		0.90298
2225	90			10	0.90298
2226		10	90		0.90298
2231		10	90		0.90298
2234		90	10		0.90298
2236	90			10	0.90298
2237	90		10		0.90298
2238			90	10	0.90298
2239	90		10		0.90298
2300	87	12			0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain